INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-2208 ACC RF03318 DESC mir-2208 microRNA precursor family STATES 187 NODES 41 CLEN 61 W 76 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 2 14:39:16 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/RF03318/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.761719 CKSUM 2700006802 NULL 0.000 0.000 0.000 0.000 GA 70.00 TC 91.00 NC 44.80 EFP7GF -5.3712 0.72885 ECMLC 0.69058 -4.42354 3.92108 1600000 381810 0.003143 ECMGC 0.46550 -14.52352 -1.17777 1600000 199569 0.002004 ECMLI 0.65415 -3.49869 4.87797 1600000 287688 0.004171 ECMGI 0.49273 -9.77590 1.73092 1600000 115983 0.003449 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 76 96 -6.800 -8.045 -0.085 -4.499 IL 1 1 2 1 4 1 4 78 98 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 5 78 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 61 - A - - MR 3 2 3 5 3 1 7 77 96 -8.294 -0.019 -6.612 1.689 -2.240 -1.885 -1.770 D 4 2 3 5 3 0 0 75 95 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 5 77 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 60 - C - - MR 6 5 3 8 5 1 6 76 95 -7.037 -0.041 -6.852 -7.064 -7.956 -1.584 1.579 -2.402 -1.030 D 7 5 3 8 5 0 0 74 94 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 3 76 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 1 59 A U - - MP 9 8 3 13 6 2 7 75 94 -9.081 -9.020 -0.021 -7.797 -8.077 -8.472 -3.686 -2.745 -3.712 3.259 -3.999 -5.052 0.294 -3.761 -3.609 1.192 -4.151 -0.239 -0.123 -4.257 -1.647 -2.553 ML 10 8 3 13 6 1 2 73 93 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 2 73 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 0 71 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 3 74 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 3 74 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 58 A U - - MP 15 14 6 19 6 2 7 73 92 -9.081 -9.020 -0.021 -7.797 -8.077 -8.472 -3.686 -2.745 -3.712 3.259 -3.999 -5.052 0.294 -3.761 -3.609 1.192 -4.151 -0.239 -0.123 -4.257 -1.647 -2.553 ML 16 14 6 19 6 1 2 71 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 2 71 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 69 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 2 72 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 3 72 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 57 G C - - MP 21 20 6 25 6 2 7 71 90 -9.081 -9.020 -0.021 -7.797 -8.077 -8.472 -4.618 -3.035 -4.706 0.282 -5.058 -4.645 -0.453 -4.940 -4.246 3.607 -4.592 -0.730 -0.842 -4.386 -2.484 -3.585 ML 22 20 6 25 6 1 1 69 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 1 69 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 67 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 2 70 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 2 70 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 56 U A - - MP 27 26 6 31 6 2 6 69 88 -9.081 -9.020 -0.021 -7.797 -8.077 -8.472 -4.056 -3.877 -3.909 -0.182 -2.880 -4.486 1.445 -3.567 -3.915 0.093 -4.295 -1.780 3.260 -4.213 -0.560 -2.753 ML 28 26 6 31 6 1 1 67 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 1 67 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 65 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 2 68 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 2 68 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 55 g c - - MP 33 32 6 37 6 2 6 67 86 -9.081 -9.020 -0.021 -7.797 -8.077 -8.472 -3.629 -2.490 -3.685 1.024 -4.252 -4.455 0.186 -3.971 -3.602 2.947 -4.046 1.589 -0.100 -3.791 -1.766 -2.567 ML 34 32 6 37 6 1 1 65 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 1 65 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 63 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 2 66 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 2 66 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 54 U A - - MP 39 38 6 43 6 2 5 65 84 -9.081 -9.020 -0.021 -7.797 -8.077 -8.472 -4.056 -3.877 -3.909 -0.182 -2.880 -4.486 1.445 -3.567 -3.915 0.093 -4.295 -1.780 3.260 -4.213 -0.560 -2.753 ML 40 38 6 43 6 1 1 63 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 1 63 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 61 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 1 64 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 2 64 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 53 A U - - MP 45 44 6 49 6 2 5 63 82 -9.081 -9.020 -0.021 -7.797 -8.077 -8.472 -3.686 -2.745 -3.712 3.259 -3.999 -5.052 0.294 -3.761 -3.609 1.192 -4.151 -0.239 -0.123 -4.257 -1.647 -2.553 ML 46 44 6 49 6 1 1 61 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 1 61 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 59 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 1 62 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 1 62 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 52 C G - - MP 51 50 6 55 6 2 4 60 80 -9.081 -9.020 -0.021 -7.797 -8.077 -8.472 -4.421 -4.315 -4.132 -0.559 -2.879 -4.560 3.509 -3.676 -4.177 -0.299 -4.452 -2.260 0.648 -4.498 -0.582 -3.021 ML 52 50 6 55 6 1 1 60 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 1 59 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 58 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 60 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 1 60 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 51 C G - - MP 57 56 6 61 4 2 2 58 78 -6.878 -7.085 -0.056 -5.499 -4.421 -4.315 -4.132 -0.559 -2.879 -4.560 3.509 -3.676 -4.177 -0.299 -4.452 -2.260 0.648 -4.498 -0.582 -3.021 ML 58 56 6 61 4 1 1 59 79 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 4 1 1 58 78 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 60 56 6 61 4 0 0 57 77 -4.568 -4.250 -2.265 -0.520 IL 61 61 5 61 4 1 1 60 80 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 62 62 6 62 3 1 1 59 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 10 - C - - - ML 63 62 6 65 3 1 1 56 75 -8.294 -0.019 -6.612 -1.584 1.579 -2.402 -1.030 D 64 62 6 65 3 0 0 55 74 -5.620 -0.734 -1.403 IL 65 65 3 65 3 1 1 57 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 50 - U - - MR 66 65 3 68 5 1 1 55 74 -7.037 -0.041 -6.852 -7.064 -7.956 -1.366 -1.384 -2.093 1.582 D 67 65 3 68 5 0 0 54 73 -5.352 -0.707 -2.978 -4.409 -2.404 IR 68 68 3 68 5 1 1 55 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 11 49 g c - - MP 69 68 3 73 6 2 2 54 73 -9.081 -9.020 -0.021 -7.797 -8.077 -8.472 -3.629 -2.490 -3.685 1.024 -4.252 -4.455 0.186 -3.971 -3.602 2.947 -4.046 1.589 -0.100 -3.791 -1.766 -2.567 ML 70 68 3 73 6 1 1 53 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 3 73 6 1 1 52 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 3 73 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 54 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 53 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 12 48 a u - - MP 75 74 6 79 6 2 2 52 71 -9.081 -9.020 -0.021 -7.797 -8.077 -8.472 -3.267 -2.309 -3.382 2.381 -3.913 -4.611 0.319 -3.564 -3.253 1.678 -3.787 1.967 0.055 -3.769 -1.572 -2.230 ML 76 74 6 79 6 1 1 51 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 50 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 52 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 51 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 47 A U - - MP 81 80 6 85 6 2 2 50 69 -9.081 -9.020 -0.021 -7.797 -8.077 -8.472 -3.686 -2.745 -3.712 3.259 -3.999 -5.052 0.294 -3.761 -3.609 1.192 -4.151 -0.239 -0.123 -4.257 -1.647 -2.553 ML 82 80 6 85 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 48 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 50 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 49 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 46 u a - - MP 87 86 6 91 6 2 2 48 67 -9.081 -9.020 -0.021 -7.797 -8.077 -8.472 -2.770 -2.708 -2.843 0.686 -2.368 -3.606 1.680 -2.873 -2.877 0.948 -3.372 -0.856 2.155 -3.029 -0.210 1.125 ML 88 86 6 91 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 46 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 44 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 47 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 45 C G - - MP 93 92 6 97 6 2 2 46 65 -9.081 -9.020 -0.021 -7.797 -8.077 -8.472 -4.421 -4.315 -4.132 -0.559 -2.879 -4.560 3.509 -3.676 -4.177 -0.299 -4.452 -2.260 0.648 -4.498 -0.582 -3.021 ML 94 92 6 97 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 42 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 45 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 16 44 U A - - MP 99 98 6 103 6 2 2 44 63 -9.081 -9.020 -0.021 -7.797 -8.077 -8.472 -4.056 -3.877 -3.909 -0.182 -2.880 -4.486 1.445 -3.567 -3.915 0.093 -4.295 -1.780 3.260 -4.213 -0.560 -2.753 ML 100 98 6 103 6 1 1 43 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 43 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 41 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 43 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 17 43 G C - - MP 105 104 6 109 4 2 2 42 61 -6.878 -7.085 -0.056 -5.499 -4.618 -3.035 -4.706 0.282 -5.058 -4.645 -0.453 -4.940 -4.246 3.607 -4.592 -0.730 -0.842 -4.386 -2.484 -3.585 ML 106 104 6 109 4 1 1 43 62 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 4 1 1 42 62 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 108 104 6 109 4 0 0 41 61 -4.568 -4.250 -2.265 -0.520 IL 109 109 5 109 4 1 1 44 63 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 110 110 6 110 3 1 1 43 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 18 - A - - - ML 111 110 6 113 5 1 1 40 59 -7.037 -0.041 -6.852 -7.064 -7.956 1.689 -2.240 -1.885 -1.770 D 112 110 6 113 5 0 0 38 57 -4.959 -0.803 -4.221 -2.596 -2.508 IL 113 113 3 113 5 1 1 40 59 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 19 42 u g - - MP 114 113 3 118 6 2 2 39 58 -9.081 -9.020 -0.021 -7.797 -8.077 -8.472 -3.959 -3.875 -3.692 -0.222 -2.491 -4.139 1.792 -3.251 -3.731 -0.007 -4.037 -1.880 0.962 -4.057 2.917 -2.609 ML 115 113 3 118 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 3 118 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 3 118 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 20 41 A U - - MP 120 119 6 124 6 2 2 37 56 -9.081 -9.020 -0.021 -7.797 -8.077 -8.472 -3.686 -2.745 -3.712 3.259 -3.999 -5.052 0.294 -3.761 -3.609 1.192 -4.151 -0.239 -0.123 -4.257 -1.647 -2.553 ML 121 119 6 124 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 21 40 U A - - MP 126 125 6 130 6 2 2 35 54 -9.081 -9.020 -0.021 -7.797 -8.077 -8.472 -4.056 -3.877 -3.909 -0.182 -2.880 -4.486 1.445 -3.567 -3.915 0.093 -4.295 -1.780 3.260 -4.213 -0.560 -2.753 ML 127 125 6 130 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 22 39 C G - - MP 132 131 6 136 6 2 2 33 52 -9.081 -9.020 -0.021 -7.797 -8.077 -8.472 -4.421 -4.315 -4.132 -0.559 -2.879 -4.560 3.509 -3.676 -4.177 -0.299 -4.452 -2.260 0.648 -4.498 -0.582 -3.021 ML 133 131 6 136 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 23 38 C G - - MP 138 137 6 142 6 2 2 30 50 -9.081 -9.020 -0.021 -7.797 -8.077 -8.472 -4.421 -4.315 -4.132 -0.559 -2.879 -4.560 3.509 -3.676 -4.177 -0.299 -4.452 -2.260 0.648 -4.498 -0.582 -3.021 ML 139 137 6 142 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 30 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 24 37 U A - - MP 144 143 6 148 4 2 2 28 48 -6.878 -7.085 -0.056 -5.499 -4.056 -3.877 -3.909 -0.182 -2.880 -4.486 1.445 -3.567 -3.915 0.093 -4.295 -1.780 3.260 -4.213 -0.560 -2.753 ML 145 143 6 148 4 1 1 29 48 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 4 1 1 29 48 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 147 143 6 148 4 0 0 28 47 -4.568 -4.250 -2.265 -0.520 IL 148 148 5 148 4 1 1 30 50 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 149 149 6 149 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 25 - A - - - ML 150 149 6 152 3 1 1 26 45 -7.899 -0.022 -6.553 1.689 -2.240 -1.885 -1.770 D 151 149 6 152 3 0 0 25 44 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 28 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 26 - U - - - ML 153 152 3 155 3 1 1 25 44 -7.899 -0.022 -6.553 -1.366 -1.384 -2.093 1.582 D 154 152 3 155 3 0 0 24 43 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 27 - C - - - ML 156 155 3 158 3 1 1 24 42 -7.899 -0.022 -6.553 -1.584 1.579 -2.402 -1.030 D 157 155 3 158 3 0 0 23 41 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 28 - A - - - ML 159 158 3 161 3 1 1 22 41 -7.899 -0.022 -6.553 1.689 -2.240 -1.885 -1.770 D 160 158 3 161 3 0 0 21 40 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 29 - u - - - ML 162 161 3 164 3 1 1 21 40 -7.899 -0.022 -6.553 -0.654 0.437 -1.425 0.712 D 163 161 3 164 3 0 0 20 39 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 30 - C - - - ML 165 164 3 167 3 1 1 20 39 -7.899 -0.022 -6.553 -1.584 1.579 -2.402 -1.030 D 166 164 3 167 3 0 0 19 38 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 31 - u - - - ML 168 167 3 170 3 1 1 19 37 -7.899 -0.022 -6.553 0.543 -0.816 -1.019 0.567 D 169 167 3 170 3 0 0 18 37 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 32 - a - - - ML 171 170 3 173 3 1 1 18 36 -7.899 -0.022 -6.553 0.693 -1.340 0.479 -0.750 D 172 170 3 173 3 0 0 17 36 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 33 - A - - - ML 174 173 3 176 3 1 1 16 35 -7.899 -0.022 -6.553 1.689 -2.240 -1.885 -1.770 D 175 173 3 176 3 0 0 16 34 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 34 - A - - - ML 177 176 3 179 3 1 1 15 33 -7.899 -0.022 -6.553 1.689 -2.240 -1.885 -1.770 D 178 176 3 179 3 0 0 15 33 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 35 - A - - - ML 180 179 3 182 3 1 1 13 32 -7.899 -0.022 -6.553 1.689 -2.240 -1.885 -1.770 D 181 179 3 182 3 0 0 13 32 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 36 - a - - - ML 183 182 3 185 2 1 1 1 1 * 0.000 0.693 -1.340 0.479 -0.750 D 184 182 3 185 2 0 0 0 0 * 0.000 IL 185 185 3 185 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 40 ] - - - - - - E 186 185 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-2208 ACC RF03318 DESC mir-2208 microRNA precursor family LENG 61 MAXL 148 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 2 14:39:16 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/RF03318/CM NSEQ 2 EFFN 1.855469 CKSUM 2700006802 STATS LOCAL MSV -8.2663 0.72885 STATS LOCAL VITERBI -9.2079 0.72885 STATS LOCAL FORWARD -3.3704 0.72885 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.27958 1.43677 1.47065 1.36895 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 0.46089 2.48016 1.62592 2.42115 1 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.46020 2.48198 1.62609 2.42400 2 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.42581 2.97924 0.21445 2.92293 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.70603 1.71289 2.42520 0.40888 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 1.91084 2.52983 0.38329 2.39960 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.70595 1.71289 2.42516 0.40889 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.45986 2.48287 1.62616 2.42538 7 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.94581 0.31016 2.68942 1.92287 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.94546 0.31021 2.68927 1.92281 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.54557 0.27367 3.11503 2.14891 10 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 1.91007 2.52891 0.38373 2.39833 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 1.03231 2.43999 0.78717 2.28746 12 g - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.45964 2.48347 1.62622 2.42632 13 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.06022 1.49777 1.79685 0.72748 14 u - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.94819 0.30981 2.69045 1.92325 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.70671 1.71290 2.42546 0.40877 16 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.42649 2.97995 0.21426 2.92395 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 0.20354 2.99049 2.73935 2.66947 18 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.71148 1.46113 2.47039 0.48283 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.45970 2.48331 1.62620 2.42607 20 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.70699 1.71290 2.42557 0.40873 21 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.94759 0.30990 2.69019 1.92315 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.94708 0.30997 2.68997 1.92307 23 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.70594 1.71289 2.42516 0.40889 24 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.20354 2.99049 2.73935 2.66947 25 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.37988 2.38376 2.88652 0.27514 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.54557 0.27367 3.11503 2.14891 27 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 0.20354 2.99049 2.73935 2.66947 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 1.85968 1.07342 2.39699 0.88807 29 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.54557 0.27367 3.11503 2.14891 30 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 1.00606 1.96343 2.10584 0.98826 31 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 0.90041 2.33687 1.04526 1.92850 32 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.20354 2.99049 2.73935 2.66947 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.20354 2.99049 2.73935 2.66947 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.20354 2.99049 2.73935 2.66947 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.90041 2.33687 1.04526 1.92850 36 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.46506 2.60389 1.54966 2.45810 37 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.19691 2.85586 0.26869 2.70353 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.19661 2.85550 0.26880 2.70307 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.46534 2.60296 1.54964 2.45687 40 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.64887 1.89168 2.29550 0.38899 41 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 1.96533 2.63754 0.35338 2.45290 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 3.13652 0.25151 2.81093 2.13036 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.46481 2.60471 1.54968 2.45919 44 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.19838 2.85766 0.26814 2.70584 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 1.16775 1.96878 1.32418 1.26129 46 a - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.65894 1.89244 2.29881 0.38729 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.51108 1.54426 2.24562 0.51168 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 2.63512 0.69201 2.34472 1.10309 49 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.37988 2.38376 2.88652 0.27514 50 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.19687 2.85582 0.26871 2.70348 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.19706 2.85605 0.26864 2.70377 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.65464 1.89211 2.29740 0.38801 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 0.46491 2.60438 1.54967 2.45876 54 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.62868 0.69315 2.34235 1.10345 55 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 0.46471 2.60502 1.54968 2.45961 56 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 3.14073 0.25102 2.81265 2.13117 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 2.65884 1.89243 2.29878 0.38731 58 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 2.66042 1.89255 2.29929 0.38704 59 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 2.54557 0.27367 3.11503 2.14891 60 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 0.20354 2.99049 2.73935 2.66947 61 A - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //