INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-1825 ACC RF03307 DESC mir-1825 microRNA precursor family STATES 160 NODES 36 CLEN 52 W 67 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 2 13:34:20 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/RF03307/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.925781 CKSUM 3974936044 NULL 0.000 0.000 0.000 0.000 GA 70.00 TC 71.40 NC 67.30 EFP7GF -5.8879 0.73065 ECMLC 0.62282 -6.03374 3.60342 1600000 485184 0.002473 ECMGC 0.42532 -17.56277 -2.32374 1600000 261185 0.001531 ECMLI 0.63981 -4.30203 4.70196 1600000 381125 0.003149 ECMGI 0.46764 -12.74390 0.17872 1600000 168479 0.002374 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 67 87 -6.863 -8.108 -0.081 -4.562 IL 1 1 2 1 4 1 3 69 88 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 4 69 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 52 - C - - MR 3 2 3 5 5 1 6 67 87 -7.092 -0.039 -6.908 -7.120 -8.011 -1.738 1.623 -2.562 -1.152 D 4 2 3 5 5 0 0 66 86 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 1 3 68 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 51 G C - - MP 6 5 3 10 6 2 7 66 86 -9.107 -9.046 -0.021 -7.823 -8.102 -8.498 -4.743 -3.094 -4.842 0.199 -5.234 -4.694 -0.599 -5.085 -4.329 3.639 -4.666 -0.793 -0.984 -4.469 -2.636 -3.719 ML 7 5 3 10 6 1 2 65 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 1 2 65 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 0 0 62 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 1 2 66 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 1 2 66 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 50 A U - - MP 12 11 6 16 6 2 6 64 84 -9.107 -9.046 -0.021 -7.823 -8.102 -8.498 -3.793 -2.824 -3.812 3.333 -4.151 -5.214 0.149 -3.854 -3.703 1.076 -4.251 -0.300 -0.269 -4.401 -1.792 -2.646 ML 13 11 6 16 6 1 1 63 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 1 1 63 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 0 0 61 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 1 2 64 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 1 2 64 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 49 G C - - MP 18 17 6 22 6 2 4 62 82 -9.107 -9.046 -0.021 -7.823 -8.102 -8.498 -4.743 -3.094 -4.842 0.199 -5.234 -4.694 -0.599 -5.085 -4.329 3.639 -4.666 -0.793 -0.984 -4.469 -2.636 -3.719 ML 19 17 6 22 6 1 1 62 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 1 1 61 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 0 0 60 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 1 2 62 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 1 2 62 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 48 A U - - MP 24 23 6 28 4 2 3 60 80 -6.946 -7.153 -0.053 -5.568 -3.793 -2.824 -3.812 3.333 -4.151 -5.214 0.149 -3.854 -3.703 1.076 -4.251 -0.300 -0.269 -4.401 -1.792 -2.646 ML 25 23 6 28 4 1 1 61 80 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 4 1 1 60 80 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 27 23 6 28 4 0 0 59 79 -4.568 -4.250 -2.265 -0.520 IL 28 28 5 28 4 1 1 62 82 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 29 29 6 29 3 1 1 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 5 - C - - - ML 30 29 6 32 3 1 2 58 77 -7.963 -0.021 -6.617 -1.738 1.623 -2.562 -1.152 D 31 29 6 32 3 0 0 57 76 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 1 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 6 - U - - - ML 33 32 3 35 3 1 1 57 76 -8.353 -0.019 -6.671 -1.483 -1.480 -2.217 1.618 D 34 32 3 35 3 0 0 56 75 -5.620 -0.734 -1.403 IL 35 35 3 35 3 1 1 58 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 47 - C - - MR 36 35 3 38 3 1 1 56 75 -8.353 -0.019 -6.671 -1.738 1.623 -2.562 -1.152 D 37 35 3 38 3 0 0 54 73 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 1 57 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 46 - C - - MR 39 38 3 41 5 1 1 55 74 -7.092 -0.039 -6.908 -7.120 -8.011 -1.738 1.623 -2.562 -1.152 D 40 38 3 41 5 0 0 53 73 -5.352 -0.707 -2.978 -4.409 -2.404 IR 41 41 3 41 5 1 1 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 7 45 G U - - MP 42 41 3 46 6 2 2 54 73 -9.107 -9.046 -0.021 -7.823 -8.102 -8.498 -3.616 -2.387 -3.783 1.134 -4.499 -5.222 -0.104 -3.806 -3.444 1.358 -3.965 3.083 -0.462 -4.431 -2.046 -2.483 ML 43 41 3 46 6 1 1 52 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 3 46 6 1 1 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 3 46 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 1 53 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 8 44 G C - - MP 48 47 6 52 6 2 2 52 71 -9.107 -9.046 -0.021 -7.823 -8.102 -8.498 -4.743 -3.094 -4.842 0.199 -5.234 -4.694 -0.599 -5.085 -4.329 3.639 -4.666 -0.793 -0.984 -4.469 -2.636 -3.719 ML 49 47 6 52 6 1 1 50 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 1 51 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 9 43 G C - - MP 54 53 6 58 6 2 2 50 69 -9.107 -9.046 -0.021 -7.823 -8.102 -8.498 -4.743 -3.094 -4.842 0.199 -5.234 -4.694 -0.599 -5.085 -4.329 3.639 -4.666 -0.793 -0.984 -4.469 -2.636 -3.719 ML 55 53 6 58 6 1 1 48 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 1 49 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 10 42 G C - - MP 60 59 6 64 6 2 2 48 67 -9.107 -9.046 -0.021 -7.823 -8.102 -8.498 -4.743 -3.094 -4.842 0.199 -5.234 -4.694 -0.599 -5.085 -4.329 3.639 -4.666 -0.793 -0.984 -4.469 -2.636 -3.719 ML 61 59 6 64 6 1 1 46 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 1 47 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 11 41 U G - - MP 66 65 6 70 6 2 2 46 65 -9.107 -9.046 -0.021 -7.823 -8.102 -8.498 -4.090 -4.011 -3.793 -0.345 -2.550 -4.217 1.737 -3.323 -3.833 -0.152 -4.125 -2.012 0.888 -4.176 3.005 -2.704 ML 67 65 6 70 6 1 1 44 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 1 45 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 12 40 G U - - MP 72 71 6 76 6 2 2 44 63 -9.107 -9.046 -0.021 -7.823 -8.102 -8.498 -3.616 -2.387 -3.783 1.134 -4.499 -5.222 -0.104 -3.806 -3.444 1.358 -3.965 3.083 -0.462 -4.431 -2.046 -2.483 ML 73 71 6 76 6 1 1 42 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 43 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 39 C G - - MP 78 77 6 82 6 2 2 42 61 -9.107 -9.046 -0.021 -7.823 -8.102 -8.498 -4.553 -4.460 -4.243 -0.691 -2.959 -4.654 3.552 -3.770 -4.292 -0.451 -4.552 -2.407 0.555 -4.622 -0.666 -3.131 ML 79 77 6 82 6 1 1 40 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 41 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 38 U A - - MP 84 83 6 88 6 2 2 40 59 -9.107 -9.046 -0.021 -7.823 -8.102 -8.498 -4.194 -4.019 -4.031 -0.313 -2.973 -4.595 1.356 -3.669 -4.036 -0.060 -4.409 -1.918 3.330 -4.345 -0.649 -2.860 ML 85 83 6 88 6 1 1 38 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 39 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 37 G C - - MP 90 89 6 94 6 2 2 38 57 -9.107 -9.046 -0.021 -7.823 -8.102 -8.498 -4.743 -3.094 -4.842 0.199 -5.234 -4.694 -0.599 -5.085 -4.329 3.639 -4.666 -0.793 -0.984 -4.469 -2.636 -3.719 ML 91 89 6 94 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 36 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 34 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 37 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 16 36 G C - - MP 96 95 6 100 6 2 2 36 55 -9.107 -9.046 -0.021 -7.823 -8.102 -8.498 -4.743 -3.094 -4.842 0.199 -5.234 -4.694 -0.599 -5.085 -4.329 3.639 -4.666 -0.793 -0.984 -4.469 -2.636 -3.719 ML 97 95 6 100 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 33 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 17 35 G U - - MP 102 101 6 106 4 2 2 34 53 -6.946 -7.153 -0.053 -5.568 -3.616 -2.387 -3.783 1.134 -4.499 -5.222 -0.104 -3.806 -3.444 1.358 -3.965 3.083 -0.462 -4.431 -2.046 -2.483 ML 103 101 6 106 4 1 1 34 54 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 4 1 1 34 53 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 105 101 6 106 4 0 0 33 52 -4.568 -4.250 -2.265 -0.520 IL 106 106 5 106 4 1 1 36 55 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 107 107 6 107 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 18 - C - - - ML 108 107 6 110 3 1 1 31 50 -8.353 -0.019 -6.671 -1.738 1.623 -2.562 -1.152 D 109 107 6 110 3 0 0 30 49 -5.620 -0.734 -1.403 IL 110 110 3 110 3 1 1 32 51 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 34 - C - - MR 111 110 3 113 5 1 1 30 49 -7.092 -0.039 -6.908 -7.120 -8.011 -1.738 1.623 -2.562 -1.152 D 112 110 3 113 5 0 0 29 48 -5.352 -0.707 -2.978 -4.409 -2.404 IR 113 113 3 113 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 19 33 U A - - MP 114 113 3 118 6 2 2 29 48 -9.107 -9.046 -0.021 -7.823 -8.102 -8.498 -4.194 -4.019 -4.031 -0.313 -2.973 -4.595 1.356 -3.669 -4.036 -0.060 -4.409 -1.918 3.330 -4.345 -0.649 -2.860 ML 115 113 3 118 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 3 118 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 3 118 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 20 32 C G - - MP 120 119 6 124 6 2 2 27 46 -9.107 -9.046 -0.021 -7.823 -8.102 -8.498 -4.553 -4.460 -4.243 -0.691 -2.959 -4.654 3.552 -3.770 -4.292 -0.451 -4.552 -2.407 0.555 -4.622 -0.666 -3.131 ML 121 119 6 124 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 21 31 C G - - MP 126 125 6 130 4 2 2 25 44 -6.946 -7.153 -0.053 -5.568 -4.553 -4.460 -4.243 -0.691 -2.959 -4.654 3.552 -3.770 -4.292 -0.451 -4.552 -2.407 0.555 -4.622 -0.666 -3.131 ML 127 125 6 130 4 1 1 26 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 4 1 1 25 45 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 129 125 6 130 4 0 0 24 44 -4.568 -4.250 -2.265 -0.520 IL 130 130 5 130 4 1 1 27 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 131 131 6 131 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 22 - C - - - ML 132 131 6 134 3 1 1 22 41 -7.963 -0.021 -6.617 -1.738 1.623 -2.562 -1.152 D 133 131 6 134 3 0 0 21 40 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 23 - C - - - ML 135 134 3 137 3 1 1 21 40 -7.963 -0.021 -6.617 -1.738 1.623 -2.562 -1.152 D 136 134 3 137 3 0 0 20 39 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 24 - U - - - ML 138 137 3 140 3 1 1 20 39 -7.963 -0.021 -6.617 -1.483 -1.480 -2.217 1.618 D 139 137 3 140 3 0 0 19 38 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 25 - A - - - ML 141 140 3 143 3 1 1 19 37 -7.963 -0.021 -6.617 1.718 -2.369 -2.001 -1.911 D 142 140 3 143 3 0 0 18 37 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 26 - G - - - ML 144 143 3 146 3 1 1 18 36 -7.963 -0.021 -6.617 -1.578 -2.798 1.723 -2.184 D 145 143 3 146 3 0 0 17 36 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 27 - A - - - ML 147 146 3 149 3 1 1 16 35 -7.963 -0.021 -6.617 1.718 -2.369 -2.001 -1.911 D 148 146 3 149 3 0 0 16 34 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 28 - C - - - ML 150 149 3 152 3 1 1 15 33 -7.963 -0.021 -6.617 -1.738 1.623 -2.562 -1.152 D 151 149 3 152 3 0 0 15 33 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 29 - U - - - ML 153 152 3 155 3 1 1 13 31 -7.963 -0.021 -6.617 -1.483 -1.480 -2.217 1.618 D 154 152 3 155 3 0 0 13 32 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 30 - A - - - ML 156 155 3 158 2 1 1 1 1 * 0.000 1.718 -2.369 -2.001 -1.911 D 157 155 3 158 2 0 0 0 0 * 0.000 IL 158 158 3 158 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 35 ] - - - - - - E 159 158 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-1825 ACC RF03307 DESC mir-1825 microRNA precursor family LENG 52 MAXL 136 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 2 13:34:20 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/RF03307/CM NSEQ 2 EFFN 1.683594 CKSUM 3974936044 STATS LOCAL MSV -7.5804 0.73065 STATS LOCAL VITERBI -8.8479 0.73065 STATS LOCAL FORWARD -2.8966 0.73065 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.73760 1.12264 1.28829 1.50105 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.35894 2.87019 0.23727 2.81322 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.51354 2.37999 1.55426 2.32554 2 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.36565 2.87680 0.23527 2.82282 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 0.51300 2.38126 1.55430 2.32759 4 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.43226 0.30836 2.99720 2.05899 5 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.29380 2.31310 2.79557 0.30234 6 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 1.77733 2.54474 0.40776 2.43869 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.36718 2.87830 0.23481 2.82501 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.36789 2.87900 0.23461 2.82602 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.36796 2.87908 0.23458 2.82613 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.62616 1.42077 2.37162 0.52292 11 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 1.77824 2.54619 0.40708 2.44076 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.85625 0.34099 2.58525 1.85741 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.61524 1.64944 2.32132 0.45169 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.36675 2.87788 0.23494 2.82439 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.36655 2.87769 0.23500 2.82411 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 1.77782 2.54553 0.40739 2.43981 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.43226 0.30836 2.99720 2.05899 18 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.61231 1.64945 2.32026 0.45219 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.85594 0.34104 2.58513 1.85737 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.85736 0.34082 2.58571 1.85759 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.43226 0.30836 2.99720 2.05899 22 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.43226 0.30836 2.99720 2.05899 23 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.29380 2.31310 2.79557 0.30234 24 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.22629 2.89556 2.65398 2.56559 25 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.33855 3.16095 0.22783 2.73506 26 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 0.22629 2.89556 2.65398 2.56559 27 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.43226 0.30836 2.99720 2.05899 28 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.29380 2.31310 2.79557 0.30234 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 0.22629 2.89556 2.65398 2.56559 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.13269 2.75345 0.29481 2.61591 31 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.13337 2.75424 0.29453 2.61695 32 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.51336 2.50109 1.48602 2.37244 33 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.43226 0.30836 2.99720 2.05899 34 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.65725 1.62417 2.35135 0.45013 35 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 3.03895 0.27507 2.70739 2.07239 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 3.03952 0.27499 2.70762 2.07250 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 0.51428 2.49843 1.48608 2.36874 38 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.13102 2.75150 0.29550 2.61333 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.65953 1.62415 2.35217 0.44977 40 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 1.91632 2.54333 0.38355 2.37724 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 3.04491 0.27429 2.70976 2.07355 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 3.04680 0.27405 2.71051 2.07392 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 3.04910 0.27375 2.71142 2.07436 44 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.66566 1.62410 2.35438 0.44878 45 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.43226 0.30836 2.99720 2.05899 46 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.43226 0.30836 2.99720 2.05899 47 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.55930 1.81023 2.19727 0.43399 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 3.04333 0.27450 2.70914 2.07325 49 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.56081 1.81031 2.19774 0.43371 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 3.04663 0.27407 2.71045 2.07389 51 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.43226 0.30836 2.99720 2.05899 52 C - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //