INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-4488 ACC RF03298 DESC mir-4488 microRNA precursor family STATES 190 NODES 41 CLEN 62 W 78 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 03:54:12 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03298/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.246094 CKSUM 972742382 NULL 0.000 0.000 0.000 0.000 GA 71.00 TC 71.90 NC 64.70 EFP7GF -6.3784 0.72417 ECMLC 0.51021 -7.53692 3.91456 1600000 413652 0.002901 ECMGC 0.38541 -16.85286 -1.25803 1600000 163064 0.002453 ECMLI 0.47396 -6.87254 5.02297 1600000 337090 0.003560 ECMGI 0.42205 -10.95999 2.00003 1600000 94958 0.004212 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 78 98 -6.581 -7.826 -0.099 -4.280 IL 1 1 2 1 4 1 9 79 99 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 10 80 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 62 - C - - MR 3 2 3 5 5 1 11 78 98 -6.847 -0.046 -6.662 -6.874 -7.766 -1.077 1.382 -1.868 -0.629 D 4 2 3 5 5 0 4 77 97 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 1 8 78 98 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 61 G C - - MP 6 5 3 10 6 2 11 77 97 -8.996 -8.936 -0.023 -7.712 -7.992 -8.387 -4.188 -2.834 -4.253 0.554 -4.454 -4.464 0.050 -4.444 -3.943 3.471 -4.323 -0.520 -0.353 -4.099 -1.961 -3.139 ML 7 5 3 10 6 1 6 76 96 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 1 5 76 95 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 0 2 73 93 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 1 7 77 97 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 1 7 76 96 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 60 G C - - MP 12 11 6 16 6 2 9 75 95 -8.996 -8.936 -0.023 -7.712 -7.992 -8.387 -4.188 -2.834 -4.253 0.554 -4.454 -4.464 0.050 -4.444 -3.943 3.471 -4.323 -0.520 -0.353 -4.099 -1.961 -3.139 ML 13 11 6 16 6 1 5 74 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 1 4 74 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 0 1 72 92 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 1 6 75 95 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 1 6 74 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 59 u g - - MP 18 17 6 22 4 2 7 73 93 -6.637 -6.844 -0.066 -5.258 -3.542 -3.435 -3.367 0.174 -2.313 -3.886 1.956 -3.026 -3.403 0.470 -3.753 -1.452 1.193 -3.676 2.546 -2.303 ML 19 17 6 22 4 1 4 73 93 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 4 1 2 73 93 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 21 17 6 22 4 0 1 72 92 -4.568 -4.250 -2.265 -0.520 IL 22 22 5 22 4 1 6 75 95 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 23 23 6 23 3 1 5 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 4 - A - - - ML 24 23 6 26 3 1 6 71 90 -7.678 -0.025 -6.332 1.562 -1.805 -1.494 -1.297 D 25 23 6 26 3 0 1 69 89 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 5 73 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 5 - G - - - ML 27 26 3 29 5 1 6 70 89 -6.847 -0.046 -6.662 -6.874 -7.766 -0.973 -2.086 1.533 -1.470 D 28 26 3 29 5 0 0 68 88 -4.959 -0.803 -4.221 -2.596 -2.508 IL 29 29 3 29 5 1 3 70 89 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 58 G C - - MP 30 29 3 34 6 2 7 69 88 -8.996 -8.936 -0.023 -7.712 -7.992 -8.387 -4.188 -2.834 -4.253 0.554 -4.454 -4.464 0.050 -4.444 -3.943 3.471 -4.323 -0.520 -0.353 -4.099 -1.961 -3.139 ML 31 29 3 34 6 1 2 67 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 3 34 6 1 2 67 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 3 34 6 0 0 65 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 3 68 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 3 68 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 57 G C - - MP 36 35 6 40 6 2 7 67 86 -8.996 -8.936 -0.023 -7.712 -7.992 -8.387 -4.188 -2.834 -4.253 0.554 -4.454 -4.464 0.050 -4.444 -3.943 3.471 -4.323 -0.520 -0.353 -4.099 -1.961 -3.139 ML 37 35 6 40 6 1 2 65 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 1 2 65 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 0 0 63 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 2 66 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 3 66 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 8 56 G C - - MP 42 41 6 46 6 2 6 65 84 -8.996 -8.936 -0.023 -7.712 -7.992 -8.387 -4.188 -2.834 -4.253 0.554 -4.454 -4.464 0.050 -4.444 -3.943 3.471 -4.323 -0.520 -0.353 -4.099 -1.961 -3.139 ML 43 41 6 46 6 1 2 63 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 2 63 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 0 61 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 2 64 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 2 64 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 9 55 G C - - MP 48 47 6 52 6 2 6 63 82 -8.996 -8.936 -0.023 -7.712 -7.992 -8.387 -4.188 -2.834 -4.253 0.554 -4.454 -4.464 0.050 -4.444 -3.943 3.471 -4.323 -0.520 -0.353 -4.099 -1.961 -3.139 ML 49 47 6 52 6 1 1 61 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 1 61 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 0 59 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 2 62 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 2 62 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 10 54 C G - - MP 54 53 6 58 6 2 6 61 80 -8.996 -8.936 -0.023 -7.712 -7.992 -8.387 -3.995 -3.843 -3.773 -0.135 -2.628 -4.256 3.333 -3.379 -3.810 0.207 -4.124 -1.785 0.934 -4.097 -0.326 -2.670 ML 55 53 6 58 6 1 1 59 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 1 59 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 0 57 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 2 60 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 2 60 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 11 53 G C - - MP 60 59 6 64 6 2 5 59 78 -8.996 -8.936 -0.023 -7.712 -7.992 -8.387 -4.188 -2.834 -4.253 0.554 -4.454 -4.464 0.050 -4.444 -3.943 3.471 -4.323 -0.520 -0.353 -4.099 -1.961 -3.139 ML 61 59 6 64 6 1 1 57 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 1 57 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 0 55 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 2 58 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 2 58 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 12 52 G C - - MP 66 65 6 70 6 2 4 57 76 -8.996 -8.936 -0.023 -7.712 -7.992 -8.387 -4.188 -2.834 -4.253 0.554 -4.454 -4.464 0.050 -4.444 -3.943 3.471 -4.323 -0.520 -0.353 -4.099 -1.961 -3.139 ML 67 65 6 70 6 1 1 55 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 1 55 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 0 53 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 1 56 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 2 56 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 13 51 G C - - MP 72 71 6 76 4 2 2 55 74 -6.581 -7.826 -0.099 -4.280 -4.188 -2.834 -4.253 0.554 -4.454 -4.464 0.050 -4.444 -3.943 3.471 -4.323 -0.520 -0.353 -4.099 -1.961 -3.139 ML 73 71 6 76 4 1 1 54 73 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 4 1 1 54 73 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 75 71 6 76 4 0 0 52 71 -12.737 -14.007 -2.036 -0.404 IL 76 76 5 76 4 1 1 54 74 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 77 77 6 77 3 1 1 54 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 50 - C - - MR 78 77 6 80 5 1 1 53 72 -6.847 -0.046 -6.662 -6.874 -7.766 -1.077 1.382 -1.868 -0.629 D 79 77 6 80 5 0 0 51 71 -5.352 -0.707 -2.978 -4.409 -2.404 IR 80 80 3 80 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 14 49 C G - - MP 81 80 3 85 6 2 3 52 71 -8.996 -8.936 -0.023 -7.712 -7.992 -8.387 -3.995 -3.843 -3.773 -0.135 -2.628 -4.256 3.333 -3.379 -3.810 0.207 -4.124 -1.785 0.934 -4.097 -0.326 -2.670 ML 82 80 3 85 6 1 1 51 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 3 85 6 1 1 50 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 3 85 6 0 0 49 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 51 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 51 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 15 48 u g - - MP 87 86 6 91 4 2 2 50 69 -6.637 -6.844 -0.066 -5.258 -3.542 -3.435 -3.367 0.174 -2.313 -3.886 1.956 -3.026 -3.403 0.470 -3.753 -1.452 1.193 -3.676 2.546 -2.303 ML 88 86 6 91 4 1 1 50 70 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 4 1 1 49 69 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 90 86 6 91 4 0 0 48 68 -4.568 -4.250 -2.265 -0.520 IL 91 91 5 91 4 1 1 51 71 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 92 92 6 92 3 1 1 50 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 16 - C - - - ML 93 92 6 95 3 1 1 47 66 -7.678 -0.025 -6.332 -1.077 1.382 -1.868 -0.629 D 94 92 6 95 3 0 0 46 65 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 1 49 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 17 - C - - - ML 96 95 3 98 3 1 1 46 65 -8.089 -0.022 -6.406 -1.077 1.382 -1.868 -0.629 D 97 95 3 98 3 0 0 45 64 -5.620 -0.734 -1.403 IL 98 98 3 98 3 1 1 47 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 47 - U - - MR 99 98 3 101 3 1 1 45 64 -8.089 -0.022 -6.406 -0.978 -1.069 -1.679 1.435 D 100 98 3 101 3 0 0 43 63 -6.390 -1.568 -0.620 IR 101 101 3 101 3 1 1 46 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 46 - U - - MR 102 101 3 104 5 1 1 44 63 -6.847 -0.046 -6.662 -6.874 -7.766 -0.978 -1.069 -1.679 1.435 D 103 101 3 104 5 0 0 43 62 -5.352 -0.707 -2.978 -4.409 -2.404 IR 104 104 3 104 5 1 1 44 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 18 45 G C - - MP 105 104 3 109 6 2 2 43 62 -8.996 -8.936 -0.023 -7.712 -7.992 -8.387 -4.188 -2.834 -4.253 0.554 -4.454 -4.464 0.050 -4.444 -3.943 3.471 -4.323 -0.520 -0.353 -4.099 -1.961 -3.139 ML 106 104 3 109 6 1 1 41 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 3 109 6 1 1 41 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 3 109 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 42 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 19 44 G C - - MP 111 110 6 115 6 2 2 41 60 -8.996 -8.936 -0.023 -7.712 -7.992 -8.387 -4.188 -2.834 -4.253 0.554 -4.454 -4.464 0.050 -4.444 -3.943 3.471 -4.323 -0.520 -0.353 -4.099 -1.961 -3.139 ML 112 110 6 115 6 1 1 39 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 39 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 40 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 20 43 C G - - MP 117 116 6 121 6 2 2 39 58 -8.996 -8.936 -0.023 -7.712 -7.992 -8.387 -3.995 -3.843 -3.773 -0.135 -2.628 -4.256 3.333 -3.379 -3.810 0.207 -4.124 -1.785 0.934 -4.097 -0.326 -2.670 ML 118 116 6 121 6 1 1 37 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 37 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 38 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 21 42 g c - - MP 123 122 6 127 6 2 2 37 56 -8.996 -8.936 -0.023 -7.712 -7.992 -8.387 -3.406 -2.374 -3.474 1.134 -3.879 -4.261 0.486 -3.728 -3.399 2.877 -3.855 1.349 0.184 -3.593 -1.460 -2.372 ML 124 122 6 127 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 35 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 33 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 36 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 22 41 C G - - MP 129 128 6 133 6 2 2 35 54 -8.996 -8.936 -0.023 -7.712 -7.992 -8.387 -3.995 -3.843 -3.773 -0.135 -2.628 -4.256 3.333 -3.379 -3.810 0.207 -4.124 -1.785 0.934 -4.097 -0.326 -2.670 ML 130 128 6 133 6 1 1 34 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 32 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 34 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 23 40 u g - - MP 135 134 6 139 4 2 2 33 52 -6.637 -6.844 -0.066 -5.258 -3.542 -3.435 -3.367 0.174 -2.313 -3.886 1.956 -3.026 -3.403 0.470 -3.753 -1.452 1.193 -3.676 2.546 -2.303 ML 136 134 6 139 4 1 1 33 53 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 4 1 1 33 52 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 138 134 6 139 4 0 0 32 51 -4.568 -4.250 -2.265 -0.520 IL 139 139 5 139 4 1 1 35 54 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 140 140 6 140 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 24 - G - - - ML 141 140 6 143 3 1 1 30 49 -7.678 -0.025 -6.332 -0.973 -2.086 1.533 -1.470 D 142 140 6 143 3 0 0 29 48 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 25 - G - - - ML 144 143 3 146 3 1 1 29 48 -7.678 -0.025 -6.332 -0.973 -2.086 1.533 -1.470 D 145 143 3 146 3 0 0 28 47 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 26 - G - - - ML 147 146 3 149 5 1 1 28 47 -6.847 -0.046 -6.662 -6.874 -7.766 -0.973 -2.086 1.533 -1.470 D 148 146 3 149 5 0 0 27 46 -4.959 -0.803 -4.221 -2.596 -2.508 IL 149 149 3 149 5 1 1 28 47 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 27 39 a u - - MP 150 149 3 154 6 2 2 27 46 -8.996 -8.936 -0.023 -7.712 -7.992 -8.387 -3.368 -2.517 -3.411 2.958 -3.542 -4.577 0.735 -3.475 -3.326 1.543 -3.851 -0.071 0.313 -3.833 -1.210 -2.275 ML 151 149 3 154 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 3 154 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 3 154 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 28 38 C G - - MP 156 155 6 160 6 2 2 25 44 -8.996 -8.936 -0.023 -7.712 -7.992 -8.387 -3.995 -3.843 -3.773 -0.135 -2.628 -4.256 3.333 -3.379 -3.810 0.207 -4.124 -1.785 0.934 -4.097 -0.326 -2.670 ML 157 155 6 160 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 6 160 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 29 37 C G - - MP 162 161 6 166 6 2 2 23 42 -8.996 -8.936 -0.023 -7.712 -7.992 -8.387 -3.995 -3.843 -3.773 -0.135 -2.628 -4.256 3.333 -3.379 -3.810 0.207 -4.124 -1.785 0.934 -4.097 -0.326 -2.670 ML 163 161 6 166 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 165 161 6 166 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 166 166 5 166 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 167 167 6 167 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 30 36 C G - - MP 168 167 6 172 4 2 2 21 40 -6.637 -6.844 -0.066 -5.258 -3.995 -3.843 -3.773 -0.135 -2.628 -4.256 3.333 -3.379 -3.810 0.207 -4.124 -1.785 0.934 -4.097 -0.326 -2.670 ML 169 167 6 172 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 170 167 6 172 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 171 167 6 172 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 172 172 5 172 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 173 173 6 173 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 31 - C - - - ML 174 173 6 176 3 1 1 18 36 -7.678 -0.025 -6.332 -1.077 1.382 -1.868 -0.629 D 175 173 6 176 3 0 0 17 36 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 32 - A - - - ML 177 176 3 179 3 1 1 16 35 -7.678 -0.025 -6.332 1.562 -1.805 -1.494 -1.297 D 178 176 3 179 3 0 0 16 34 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 33 - C - - - ML 180 179 3 182 3 1 1 15 33 -7.678 -0.025 -6.332 -1.077 1.382 -1.868 -0.629 D 181 179 3 182 3 0 0 15 33 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 34 - U - - - ML 183 182 3 185 3 1 1 13 32 -7.678 -0.025 -6.332 -0.978 -1.069 -1.679 1.435 D 184 182 3 185 3 0 0 13 32 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 35 - A - - - ML 186 185 3 188 2 1 1 1 1 * 0.000 1.562 -1.805 -1.494 -1.297 D 187 185 3 188 2 0 0 0 0 * 0.000 IL 188 188 3 188 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 40 ] - - - - - - E 189 188 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-4488 ACC RF03298 DESC mir-4488 microRNA precursor family LENG 62 MAXL 149 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 03:54:12 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03298/CM NSEQ 2 EFFN 1.582031 CKSUM 972742382 STATS LOCAL MSV -8.2631 0.72417 STATS LOCAL VITERBI -9.1439 0.72417 STATS LOCAL FORWARD -2.8626 0.72417 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.94657 1.10691 1.05050 1.73218 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.32287 2.80764 0.25117 2.75247 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.32759 2.81211 0.24970 2.75902 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.57135 1.39762 2.31071 0.54958 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 0.24151 2.83777 2.60200 2.50253 4 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.27651 3.08819 0.24595 2.66196 5 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.33102 2.81535 0.24863 2.76379 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.33172 2.81603 0.24841 2.76478 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.33184 2.81614 0.24837 2.76495 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.33171 2.81602 0.24842 2.76476 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.80216 0.36123 2.52207 1.81888 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.33125 2.81558 0.24856 2.76412 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.33103 2.81537 0.24863 2.76381 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.33083 2.81518 0.24869 2.76354 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.77557 0.36576 2.51134 1.81486 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.56375 1.39815 2.30785 0.55086 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.36393 0.33178 2.92567 2.00489 16 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.36393 0.33178 2.92567 2.00489 17 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.32884 2.81329 0.24931 2.76076 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.33108 2.81541 0.24861 2.76388 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.80285 0.36111 2.52235 1.81898 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 1.86815 2.42699 0.41935 2.30447 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.80282 0.36112 2.52234 1.81897 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.57402 1.39743 2.31171 0.54914 23 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.27651 3.08819 0.24595 2.66196 24 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.27651 3.08819 0.24595 2.66196 25 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.27651 3.08819 0.24595 2.66196 26 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 0.54749 2.32230 1.51249 2.27114 27 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.80289 0.36111 2.52236 1.81898 28 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.80304 0.36108 2.52242 1.81901 29 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.80275 0.36113 2.52231 1.81896 30 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.36393 0.33178 2.92567 2.00489 31 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 0.24151 2.83777 2.60200 2.50253 32 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.36393 0.33178 2.92567 2.00489 33 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.24186 2.27064 2.74043 0.32027 34 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.24151 2.83777 2.60200 2.50253 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.09129 2.68716 0.31344 2.55784 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.09075 2.68655 0.31368 2.55702 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.08951 2.68516 0.31422 2.55514 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.49350 1.76207 2.13584 0.46594 39 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 1.88402 2.48222 0.40524 2.32641 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.09248 2.68850 0.31293 2.55964 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53424 0.71178 2.24076 1.12846 42 c - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.09340 2.68954 0.31253 2.56104 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.98929 0.28934 2.64775 2.03938 44 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.99167 0.28901 2.64867 2.03984 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.24186 2.27064 2.74043 0.32027 46 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.24186 2.27064 2.74043 0.32027 47 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 1.88365 2.48180 0.40546 2.32584 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 2.09174 2.68767 0.31325 2.55852 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.36393 0.33178 2.92567 2.00489 50 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.98017 0.29060 2.64421 2.03760 51 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.98048 0.29056 2.64433 2.03766 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.98067 0.29053 2.64441 2.03770 53 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 2.09139 2.68726 0.31340 2.55798 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.97983 0.29065 2.64408 2.03754 55 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 2.97782 0.29093 2.64330 2.03714 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 2.97338 0.29155 2.64157 2.03627 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 2.96436 0.29282 2.63803 2.03449 58 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 1.88421 2.48244 0.40512 2.32671 59 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 2.98523 0.28990 2.64618 2.03859 60 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 2.98663 0.28971 2.64672 2.03886 61 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 62 2.36393 0.33178 2.92567 2.00489 62 C - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //