INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-9428 ACC RF03290 DESC mir-9428 microRNA precursor family STATES 208 NODES 52 CLEN 68 W 84 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 4 18:01:33 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03290/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 1.760742 CKSUM 3472477269 NULL 0.000 0.000 0.000 0.000 GA 81.00 TC 81.60 NC 80.60 EFP7GF -8.5940 0.71906 ECMLC 0.64247 -6.83913 2.58797 1600000 512318 0.002342 ECMGC 0.47065 -14.74665 -2.67213 1600000 117522 0.003404 ECMLI 0.63509 -4.59809 4.16377 1600000 313215 0.003831 ECMGI 0.49294 -10.27963 0.42399 1600000 78253 0.005112 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 84 103 -6.877 -7.084 -0.056 -5.498 IL 1 1 2 1 4 1 19 88 108 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 18 87 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 18 84 103 -7.899 -0.022 -6.553 1.689 -2.240 -1.885 -1.769 D 4 2 3 5 3 0 14 82 102 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 18 86 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - C - - - ML 6 5 3 8 3 1 17 83 102 -7.899 -0.022 -6.553 -1.583 1.579 -2.401 -1.029 D 7 5 3 8 3 0 13 81 101 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 17 85 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - C - - - ML 9 8 3 11 3 1 16 82 101 -7.899 -0.022 -6.553 -1.583 1.579 -2.401 -1.029 D 10 8 3 11 3 0 12 80 100 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 16 84 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - G - - - ML 12 11 3 14 3 1 15 80 100 -7.899 -0.022 -6.553 -1.440 -2.638 1.689 -2.024 D 13 11 3 14 3 0 11 79 99 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 15 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - C - - - ML 15 14 3 17 3 1 14 79 99 -7.899 -0.022 -6.553 -1.583 1.579 -2.401 -1.029 D 16 14 3 17 3 0 11 78 98 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 14 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 18 17 3 20 3 1 13 78 98 -7.899 -0.022 -6.553 -1.365 -1.383 -2.093 1.582 D 19 17 3 20 3 0 10 77 97 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 13 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - C - - - ML 21 20 3 23 3 1 12 77 97 -7.899 -0.022 -6.553 -1.583 1.579 -2.401 -1.029 D 22 20 3 23 3 0 9 76 96 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 12 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 24 23 3 26 3 1 11 76 96 -8.293 -0.276 -2.548 1.689 -2.240 -1.885 -1.769 D 25 23 3 26 3 0 9 75 95 -5.620 -0.734 -1.403 IL 26 26 3 26 3 1 12 77 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 68 - A - - MR 27 26 3 29 3 1 12 75 95 -8.041 -0.023 -6.358 1.525 -1.706 -1.404 -1.190 D 28 26 3 29 3 0 7 74 94 -7.582 -0.494 -1.811 IR 29 29 3 29 3 1 11 76 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 67 - C - - MR 30 29 3 32 3 1 11 74 94 -8.293 -0.019 -6.611 -1.583 1.579 -2.401 -1.029 D 31 29 3 32 3 0 4 73 92 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 10 75 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 66 - a - - MR 33 32 3 35 3 1 10 73 93 -8.293 -0.019 -6.611 0.951 -1.336 0.113 -0.762 D 34 32 3 35 3 0 3 72 91 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 9 74 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 65 - A - - MR 36 35 3 38 3 1 10 72 92 -8.293 -0.019 -6.611 1.689 -2.240 -1.885 -1.769 D 37 35 3 38 3 0 2 71 90 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 8 73 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 64 - a - - MR 39 38 3 41 3 1 9 71 91 -8.293 -0.019 -6.611 0.951 -1.336 0.113 -0.762 D 40 38 3 41 3 0 2 70 89 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 7 72 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 63 - c - - MR 42 41 3 44 5 1 9 70 90 -7.036 -0.041 -6.852 -7.064 -7.956 0.306 0.566 -1.158 -0.259 D 43 41 3 44 5 0 1 69 88 -5.352 -0.707 -2.978 -4.409 -2.404 IR 44 44 3 44 5 1 5 71 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 9 62 c g - - MP 45 44 3 49 6 2 9 69 89 -9.081 -9.020 -0.022 -7.797 -8.076 -8.471 -3.123 -3.106 -3.117 0.350 -2.347 -3.764 2.736 0.870 -3.141 0.535 -3.579 -1.278 1.210 -3.338 -0.124 -2.119 ML 46 44 3 49 6 1 3 68 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 3 49 6 1 3 68 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 3 49 6 0 0 65 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 4 69 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 4 69 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 10 61 G C - - MP 51 50 6 55 6 2 7 67 87 -9.081 -9.020 -0.022 -7.797 -8.076 -8.471 -4.617 -3.035 -4.706 0.282 -5.057 -4.645 -0.452 -4.939 -4.245 3.607 -4.591 -0.729 -0.841 -4.386 -2.483 -3.584 ML 52 50 6 55 6 1 3 66 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 3 66 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 64 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 4 67 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 4 67 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 11 60 A U - - MP 57 56 6 61 6 2 6 65 85 -9.081 -9.020 -0.022 -7.797 -8.076 -8.471 -3.685 -2.745 -3.712 3.259 -3.998 -5.051 0.295 -3.760 -3.608 1.193 -4.150 -0.239 -0.123 -4.256 -1.646 -2.552 ML 58 56 6 61 6 1 2 65 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 2 64 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 63 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 3 65 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 3 65 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 12 59 A U - - MP 63 62 6 67 4 2 4 63 83 -6.877 -7.084 -0.056 -5.498 -3.685 -2.745 -3.712 3.259 -3.998 -5.051 0.295 -3.760 -3.608 1.193 -4.150 -0.239 -0.123 -4.256 -1.646 -2.552 ML 64 62 6 67 4 1 1 64 83 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 4 1 1 63 83 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 66 62 6 67 4 0 0 62 82 -4.568 -4.250 -2.265 -0.520 IL 67 67 5 67 4 1 3 65 85 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 68 68 6 68 3 1 2 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 13 - C - - - ML 69 68 6 71 3 1 3 61 80 -7.899 -0.022 -6.553 -1.583 1.579 -2.401 -1.029 D 70 68 6 71 3 0 0 60 79 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 2 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 14 - A - - - ML 72 71 3 74 3 1 3 60 79 -7.899 -0.022 -6.553 1.689 -2.240 -1.885 -1.769 D 73 71 3 74 3 0 0 58 78 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 1 62 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 15 - U - - - ML 75 74 3 77 3 1 2 59 78 -7.899 -0.022 -6.553 -1.365 -1.383 -2.093 1.582 D 76 74 3 77 3 0 0 57 77 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 1 61 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 16 - A - - - ML 78 77 3 80 3 1 2 58 77 -7.899 -0.022 -6.553 1.689 -2.240 -1.885 -1.769 D 79 77 3 80 3 0 0 56 76 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 1 60 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 17 - G - - - ML 81 80 3 83 3 1 1 57 76 -8.293 -0.019 -6.611 -1.440 -2.638 1.689 -2.024 D 82 80 3 83 3 0 0 55 74 -5.620 -0.734 -1.403 IL 83 83 3 83 3 1 1 57 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 58 - a - - MR 84 83 3 86 3 1 1 56 75 -8.293 -0.019 -6.611 0.951 -1.336 0.113 -0.762 D 85 83 3 86 3 0 0 54 73 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 1 56 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 57 - a - - MR 87 86 3 89 3 1 1 54 74 -8.293 -0.019 -6.611 0.825 -0.901 -1.025 0.265 D 88 86 3 89 3 0 0 53 72 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 1 55 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 56 - A - - MR 90 89 3 92 3 1 1 53 73 -8.293 -0.019 -6.611 1.689 -2.240 -1.885 -1.769 D 91 89 3 92 3 0 0 52 71 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 1 54 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 55 - a - - MR 93 92 3 95 3 1 1 52 72 -8.293 -0.019 -6.611 0.355 -0.149 -0.068 -0.209 D 94 92 3 95 3 0 0 51 70 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 1 53 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 54 - c - - MR 96 95 3 98 3 1 1 51 71 -8.293 -0.019 -6.611 0.306 0.566 -1.158 -0.259 D 97 95 3 98 3 0 0 50 69 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 1 52 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 53 - a - - MR 99 98 3 101 5 1 1 50 69 -7.036 -0.041 -6.852 -7.064 -7.956 0.350 -0.150 -0.060 -0.209 D 100 98 3 101 5 0 0 49 68 -5.352 -0.707 -2.978 -4.409 -2.404 IR 101 101 3 101 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 18 52 G C - - MP 102 101 3 106 6 2 2 49 68 -9.081 -9.020 -0.022 -7.797 -8.076 -8.471 -4.617 -3.035 -4.706 0.282 -5.057 -4.645 -0.452 -4.939 -4.245 3.607 -4.591 -0.729 -0.841 -4.386 -2.483 -3.584 ML 103 101 3 106 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 3 106 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 3 106 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 19 51 g u - - MP 108 107 6 112 6 2 2 47 66 -9.081 -9.020 -0.022 -7.797 -8.076 -8.471 -3.534 -2.335 -3.694 1.183 -4.343 -5.069 0.035 -3.729 -3.379 1.468 -3.896 2.992 -0.325 -4.294 -1.906 -2.412 ML 109 107 6 112 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 20 50 a u - - MP 114 113 6 118 6 2 2 45 64 -9.081 -9.020 -0.022 -7.797 -8.076 -8.471 -2.585 -2.292 0.468 2.421 -2.747 -3.634 1.011 -2.955 -2.749 1.453 -3.288 -0.263 0.731 -2.907 -0.712 -1.801 ML 115 113 6 118 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 21 49 c g - - MP 120 119 6 124 4 2 2 43 62 -6.877 -7.084 -0.056 -5.498 -3.123 -3.106 -3.117 0.350 -2.347 -3.764 2.736 0.870 -3.141 0.535 -3.579 -1.278 1.210 -3.338 -0.124 -2.119 ML 121 119 6 124 4 1 1 44 63 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 4 1 1 44 63 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 123 119 6 124 4 0 0 43 62 -4.568 -4.250 -2.265 -0.520 IL 124 124 5 124 4 1 1 45 65 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 125 125 6 125 3 1 1 44 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 22 - A - - - ML 126 125 6 128 3 1 1 41 59 -7.899 -0.022 -6.553 1.689 -2.240 -1.885 -1.769 D 127 125 6 128 3 0 0 40 59 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 43 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 23 - C - - - ML 129 128 3 131 3 1 1 40 58 -8.293 -0.019 -6.611 -1.583 1.579 -2.401 -1.029 D 130 128 3 131 3 0 0 38 57 -5.620 -0.734 -1.403 IL 131 131 3 131 3 1 1 40 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 48 - a - - MR 132 131 3 134 3 1 1 39 57 -8.293 -0.019 -6.611 0.404 -0.221 -0.054 -0.224 D 133 131 3 134 3 0 0 37 56 -6.390 -1.568 -0.620 IR 134 134 3 134 3 1 1 39 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 47 - a - - MR 135 134 3 137 5 1 1 38 56 -7.036 -0.041 -6.852 -7.064 -7.956 0.825 -0.901 -1.025 0.265 D 136 134 3 137 5 0 0 36 55 -5.352 -0.707 -2.978 -4.409 -2.404 IR 137 137 3 137 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 24 46 U A - - MP 138 137 3 142 6 2 2 37 55 -9.081 -9.020 -0.022 -7.797 -8.076 -8.471 -4.056 -3.876 -3.908 -0.181 -2.880 -4.485 1.445 -3.566 -3.915 0.093 -4.295 -1.780 3.260 -4.212 -0.559 -2.752 ML 139 137 3 142 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 3 142 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 3 142 6 0 0 33 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 25 45 G C - - MP 144 143 6 148 6 2 2 35 53 -9.081 -9.020 -0.022 -7.797 -8.076 -8.471 -4.617 -3.035 -4.706 0.282 -5.057 -4.645 -0.452 -4.939 -4.245 3.607 -4.591 -0.729 -0.841 -4.386 -2.483 -3.584 ML 145 143 6 148 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 31 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 26 44 U A - - MP 150 149 6 154 6 2 2 33 51 -9.081 -9.020 -0.022 -7.797 -8.076 -8.471 -4.056 -3.876 -3.908 -0.181 -2.880 -4.485 1.445 -3.566 -3.915 0.093 -4.295 -1.780 3.260 -4.212 -0.559 -2.752 ML 151 149 6 154 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 29 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 27 43 U A - - MP 156 155 6 160 6 2 2 31 49 -9.081 -9.020 -0.022 -7.797 -8.076 -8.471 -4.056 -3.876 -3.908 -0.181 -2.880 -4.485 1.445 -3.566 -3.915 0.093 -4.295 -1.780 3.260 -4.212 -0.559 -2.752 ML 157 155 6 160 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 6 160 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 28 42 C G - - MP 162 161 6 166 6 2 2 29 47 -9.081 -9.020 -0.022 -7.797 -8.076 -8.471 -4.420 -4.314 -4.131 -0.558 -2.878 -4.560 3.509 -3.675 -4.176 -0.298 -4.451 -2.259 0.649 -4.497 -0.582 -3.021 ML 163 161 6 166 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 165 161 6 166 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 166 166 5 166 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 167 167 6 167 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 29 41 G C - - MP 168 167 6 172 6 2 2 27 45 -9.081 -9.020 -0.022 -7.797 -8.076 -8.471 -4.617 -3.035 -4.706 0.282 -5.057 -4.645 -0.452 -4.939 -4.245 3.607 -4.591 -0.729 -0.841 -4.386 -2.483 -3.584 ML 169 167 6 172 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 170 167 6 172 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 171 167 6 172 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 172 172 5 172 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 173 173 6 173 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 30 40 C G - - MP 174 173 6 178 6 2 2 25 43 -9.081 -9.020 -0.022 -7.797 -8.076 -8.471 -4.420 -4.314 -4.131 -0.558 -2.878 -4.560 3.509 -3.675 -4.176 -0.298 -4.451 -2.259 0.649 -4.497 -0.582 -3.021 ML 175 173 6 178 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 6 178 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 6 178 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 178 178 5 178 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 31 39 G C - - MP 180 179 6 184 6 2 2 23 41 -9.081 -9.020 -0.022 -7.797 -8.076 -8.471 -4.617 -3.035 -4.706 0.282 -5.057 -4.645 -0.452 -4.939 -4.245 3.607 -4.591 -0.729 -0.841 -4.386 -2.483 -3.584 ML 181 179 6 184 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 184 184 5 184 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 32 38 A U - - MP 186 185 6 190 6 2 2 21 39 -9.081 -9.020 -0.022 -7.797 -8.076 -8.471 -3.685 -2.745 -3.712 3.259 -3.998 -5.051 0.295 -3.760 -3.608 1.193 -4.150 -0.239 -0.123 -4.256 -1.646 -2.552 ML 187 185 6 190 6 1 1 20 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 18 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 190 190 5 190 6 1 1 20 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 33 37 A U - - MP 192 191 6 196 4 2 2 18 37 -6.877 -7.084 -0.056 -5.498 -3.685 -2.745 -3.712 3.259 -3.998 -5.051 0.295 -3.760 -3.608 1.193 -4.150 -0.239 -0.123 -4.256 -1.646 -2.552 ML 193 191 6 196 4 1 1 20 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 4 1 1 19 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 195 191 6 196 4 0 0 18 37 -4.568 -4.250 -2.265 -0.520 IL 196 196 5 196 4 1 1 21 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 197 197 6 197 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 34 - A - - - ML 198 197 6 200 3 1 1 15 33 -7.899 -0.022 -6.553 1.689 -2.240 -1.885 -1.769 D 199 197 6 200 3 0 0 15 33 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 35 - c - - - ML 201 200 3 203 3 1 1 13 32 -7.899 -0.022 -6.553 0.231 0.637 -1.189 -0.265 D 202 200 3 203 3 0 0 13 32 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 36 - U - - - ML 204 203 3 206 2 1 1 1 1 * 0.000 -1.365 -1.383 -2.093 1.582 D 205 203 3 206 2 0 0 0 0 * 0.000 IL 206 206 3 206 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 51 ] - - - - - - E 207 206 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-9428 ACC RF03290 DESC mir-9428 microRNA precursor family LENG 68 MAXL 154 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 4 18:01:33 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03290/CM NSEQ 3 EFFN 2.422852 CKSUM 3472477269 STATS LOCAL MSV -8.5936 0.71906 STATS LOCAL VITERBI -9.0844 0.71906 STATS LOCAL FORWARD -3.5585 0.71906 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.23091 1.33052 1.50026 1.51158 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 0.00000 * 1 0.14851 3.27845 2.99870 2.98635 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 2 2.89384 0.19207 3.47012 2.42733 2 C - - : 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 3 2.89384 0.19207 3.47012 2.42733 3 C - - : 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 4 2.74051 3.62385 0.14157 3.19926 4 G - - : 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 5 2.89384 0.19207 3.47012 2.42733 5 C - - : 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 6 2.64671 2.60444 3.16559 0.20705 6 U - - : 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 7 2.89384 0.19207 3.47012 2.42733 7 C - - : 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 8 0.14851 3.27845 2.99870 2.98635 8 A - - : 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 9 2.51617 0.46572 2.31295 1.64724 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 10 2.60877 3.27781 0.16422 3.21607 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 11 0.32629 2.81937 1.86586 2.74888 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 12 0.32628 2.81943 1.86587 2.74896 12 A - - < 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 13 2.89384 0.19207 3.47012 2.42733 13 C - - - 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 14 0.14851 3.27845 2.99870 2.98635 14 A - - - 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 15 2.64671 2.60444 3.16559 0.20705 15 U - - - 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 16 0.14851 3.27845 2.99870 2.98635 16 A - - - 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 17 2.74051 3.62385 0.14157 3.19926 17 G - - - 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 18 2.60873 3.27777 0.16423 3.21600 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 19 1.93717 2.93911 0.29763 2.80672 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 20 0.65149 2.09267 1.53784 1.96232 20 A - - < 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 21 2.51982 0.46488 2.31443 1.64771 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 22 0.14851 3.27845 2.99870 2.98635 22 A - - - 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 23 2.89384 0.19207 3.47012 2.42733 23 C - - - 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 24 3.01216 1.93559 2.76798 0.29614 24 U - - < 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 25 2.61070 3.28014 0.16380 3.21929 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 26 3.01432 1.93571 2.76895 0.29589 26 U - - < 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 27 3.01380 1.93568 2.76872 0.29595 27 U - - < 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 28 3.23516 0.23092 3.01508 2.13878 28 C - - < 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 29 2.60957 3.27877 0.16405 3.21739 29 G - - < 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 30 3.23320 0.23112 3.01414 2.13844 30 C - - < 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 31 2.60874 3.27777 0.16423 3.21601 31 G - - < 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 32 0.32649 2.81858 1.86571 2.74774 32 A - - < 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 33 0.32654 2.81840 1.86568 2.74748 33 A - - < 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 34 0.14851 3.27845 2.99870 2.98635 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 35 1.23443 0.85575 2.34788 1.66886 35 c - - _ 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 36 2.64671 2.60444 3.16559 0.20705 36 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 37 2.97180 2.16406 2.62965 0.27204 37 U - - > 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 38 2.97235 2.16412 2.62986 0.27197 38 U - - > 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 39 3.41511 0.19459 3.11312 2.30765 39 C - - > 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 40 2.41575 3.18147 0.19960 2.99333 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 41 3.41820 0.19432 3.11449 2.30824 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 42 2.41689 3.18305 0.19928 2.99522 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 43 0.33560 2.95445 1.77265 2.76305 43 A - - > 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 44 0.33538 2.95552 1.77277 2.76434 44 A - - > 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 45 3.43138 0.19319 3.12033 2.31073 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 46 0.33469 2.95888 1.77313 2.76839 46 A - - > 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 47 0.76853 2.09688 2.19094 1.19847 47 a - - - 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 48 1.09949 1.52095 1.39337 1.60834 48 a - - - 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 49 1.91137 2.48405 0.64746 1.40510 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 50 2.19031 1.75179 1.33075 0.79767 50 u - - > 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 51 3.02333 1.94110 2.73994 0.29673 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 52 3.43713 0.19270 3.12287 2.31181 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 53 1.14203 1.46550 1.39688 1.59702 53 a - - - 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 54 1.17232 0.91049 2.31925 1.66243 54 c - - - 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 55 1.13751 1.46518 1.40326 1.59676 55 a - - - 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 56 0.14851 3.27845 2.99870 2.98635 56 A - - - 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 57 0.76853 2.09688 2.19094 1.19847 57 a - - - 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 58 0.67405 2.46448 1.27417 2.07432 58 A - - - 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 59 2.97679 2.16468 2.63157 0.27143 59 U - - > 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 60 2.97869 2.16492 2.63230 0.27119 60 U - - > 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 61 3.42880 0.19341 3.11919 2.31025 61 C - - > 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 62 1.91296 2.48579 0.64668 1.40522 62 G - - > 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 63 1.17232 0.91049 2.31925 1.66243 63 c - - : 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 64 0.67405 2.46448 1.27417 2.07432 64 A - - : 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 65 0.14851 3.27845 2.99870 2.98635 65 A - - : 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 66 0.67405 2.46448 1.27417 2.07432 66 A - - : 1.38629 1.38629 1.38629 1.38629 0.04118 3.90335 3.90335 1.46634 0.26236 1.09861 0.40547 67 2.89384 0.19207 3.47012 2.42733 67 C - - : 1.38629 1.38629 1.38629 1.38629 0.27160 3.90335 1.52477 1.46634 0.26236 1.09861 0.40547 68 0.24461 2.82651 2.59187 2.49027 68 A - - : 1.38629 1.38629 1.38629 1.38629 0.02613 3.65787 * 1.46634 0.26236 0.00000 * //