INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-2187 ACC RF03272 DESC mir-2187 microRNA precursor family STATES 190 NODES 45 CLEN 62 W 77 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 9 22:19:28 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03272/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.566406 CKSUM 1818575567 NULL 0.000 0.000 0.000 0.000 GA 67.00 TC 67.00 NC 66.90 EFP7GF -5.3281 0.72542 ECMLC 0.63861 -4.62162 4.51385 1600000 410054 0.002926 ECMGC 0.46509 -12.47018 0.64681 1600000 178455 0.002241 ECMLI 0.58395 -3.74094 5.51897 1600000 267635 0.004484 ECMGI 0.48949 -8.37886 3.38307 1600000 126610 0.003159 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 77 96 -6.791 -6.998 -0.059 -5.412 IL 1 1 2 1 4 1 9 81 101 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 8 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 8 77 96 -7.819 -0.023 -6.473 -1.223 -1.266 -1.941 1.534 D 4 2 3 5 3 0 3 76 95 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 7 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 7 76 95 -7.819 -0.023 -6.473 -1.223 -1.266 -1.941 1.534 D 7 5 3 8 3 0 2 75 94 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 7 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 1 6 75 94 -8.220 -0.021 -6.537 1.648 -2.081 -1.742 -1.596 D 10 8 3 11 3 0 1 74 93 -5.620 -0.734 -1.403 IL 11 11 3 11 3 1 5 76 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 62 - C - - MR 12 11 3 14 3 1 6 74 93 -8.220 -0.021 -6.537 -1.395 1.516 -2.205 -0.880 D 13 11 3 14 3 0 0 72 91 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 4 75 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 61 - G - - MR 15 14 3 17 3 1 5 73 92 -8.220 -0.021 -6.537 -1.270 -2.439 1.641 -1.824 D 16 14 3 17 3 0 0 71 90 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 4 74 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 60 - U - - MR 18 17 3 20 3 1 4 72 91 -8.220 -0.021 -6.537 -1.223 -1.266 -1.941 1.534 D 19 17 3 20 3 0 0 70 89 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 3 73 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 59 - A - - MR 21 20 3 23 3 1 4 71 90 -8.220 -0.021 -6.537 1.648 -2.081 -1.742 -1.596 D 22 20 3 23 3 0 0 69 88 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 2 72 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 58 - U - - MR 24 23 3 26 3 1 3 70 89 -8.220 -0.021 -6.537 -1.223 -1.266 -1.941 1.534 D 25 23 3 26 3 0 0 68 88 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 2 71 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 57 - C - - MR 27 26 3 29 5 1 3 69 88 -6.968 -0.043 -6.783 -6.995 -7.887 -1.395 1.516 -2.205 -0.880 D 28 26 3 29 5 0 0 68 87 -5.352 -0.707 -2.978 -4.409 -2.404 IR 29 29 3 29 5 1 1 69 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 4 56 A U - - MP 30 29 3 34 6 2 4 68 87 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -3.561 -2.654 -3.595 3.158 -3.820 -4.864 0.465 -3.650 -3.498 1.328 -4.034 -0.171 0.047 -4.089 -1.477 -2.444 ML 31 29 3 34 6 1 1 66 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 3 34 6 1 1 66 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 3 34 6 0 0 64 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 1 68 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 1 67 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 5 55 U A - - MP 36 35 6 40 6 2 4 66 85 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -3.898 -3.711 -3.767 -0.029 -2.775 -4.357 1.546 -3.449 -3.775 0.274 -4.163 -1.619 3.167 -4.059 -0.458 -2.627 ML 37 35 6 40 6 1 1 64 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 1 1 64 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 0 0 62 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 1 66 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 1 65 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 6 54 U A - - MP 42 41 6 46 6 2 4 64 83 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -3.898 -3.711 -3.767 -0.029 -2.775 -4.357 1.546 -3.449 -3.775 0.274 -4.163 -1.619 3.167 -4.059 -0.458 -2.627 ML 43 41 6 46 6 1 1 62 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 1 62 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 0 60 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 1 64 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 1 63 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 7 53 A U - - MP 48 47 6 52 6 2 4 62 81 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -3.561 -2.654 -3.595 3.158 -3.820 -4.864 0.465 -3.650 -3.498 1.328 -4.034 -0.171 0.047 -4.089 -1.477 -2.444 ML 49 47 6 52 6 1 1 60 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 1 60 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 0 58 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 1 62 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 1 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 8 52 G C - - MP 54 53 6 58 6 2 3 60 79 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -4.462 -2.962 -4.539 0.383 -4.838 -4.581 -0.271 -4.759 -4.139 3.563 -4.497 -0.652 -0.665 -4.283 -2.294 -3.421 ML 55 53 6 58 6 1 1 58 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 1 58 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 0 56 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 1 60 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 1 59 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 9 51 u g - - MP 60 59 6 64 6 2 3 58 77 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -3.801 -3.709 -3.569 -0.073 -2.421 -4.043 1.857 -3.165 -3.607 0.172 -3.930 -1.719 1.051 -3.913 2.795 -2.493 ML 61 59 6 64 6 1 1 56 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 1 56 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 0 54 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 1 58 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 1 57 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 10 50 A U - - MP 66 65 6 70 6 2 3 56 75 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -3.561 -2.654 -3.595 3.158 -3.820 -4.864 0.465 -3.650 -3.498 1.328 -4.034 -0.171 0.047 -4.089 -1.477 -2.444 ML 67 65 6 70 6 1 1 54 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 1 54 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 0 52 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 1 56 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 1 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 11 49 U A - - MP 72 71 6 76 6 2 3 54 73 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -3.898 -3.711 -3.767 -0.029 -2.775 -4.357 1.546 -3.449 -3.775 0.274 -4.163 -1.619 3.167 -4.059 -0.458 -2.627 ML 73 71 6 76 6 1 1 52 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 1 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 54 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 12 48 A U - - MP 78 77 6 82 6 2 2 52 71 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -3.561 -2.654 -3.595 3.158 -3.820 -4.864 0.465 -3.650 -3.498 1.328 -4.034 -0.171 0.047 -4.089 -1.477 -2.444 ML 79 77 6 82 6 1 1 50 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 52 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 13 47 G C - - MP 84 83 6 88 6 2 2 50 69 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -4.462 -2.962 -4.539 0.383 -4.838 -4.581 -0.271 -4.759 -4.139 3.563 -4.497 -0.652 -0.665 -4.283 -2.294 -3.421 ML 85 83 6 88 6 1 1 48 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 50 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 14 46 C G - - MP 90 89 6 94 6 2 2 48 67 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -4.260 -4.138 -3.998 -0.399 -2.783 -4.447 3.450 -3.563 -4.039 -0.113 -4.329 -2.083 0.759 -4.348 -0.484 -2.889 ML 91 89 6 94 6 1 1 46 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 15 45 C G - - MP 96 95 6 100 6 2 2 46 65 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -4.260 -4.138 -3.998 -0.399 -2.783 -4.447 3.450 -3.563 -4.039 -0.113 -4.329 -2.083 0.759 -4.348 -0.484 -2.889 ML 97 95 6 100 6 1 1 44 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 16 44 U A - - MP 102 101 6 106 6 2 2 44 63 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -3.898 -3.711 -3.767 -0.029 -2.775 -4.357 1.546 -3.449 -3.775 0.274 -4.163 -1.619 3.167 -4.059 -0.458 -2.627 ML 103 101 6 106 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 42 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 40 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 17 43 G C - - MP 108 107 6 112 6 2 2 42 61 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -4.462 -2.962 -4.539 0.383 -4.838 -4.581 -0.271 -4.759 -4.139 3.563 -4.497 -0.652 -0.665 -4.283 -2.294 -3.421 ML 109 107 6 112 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 39 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 18 42 U A - - MP 114 113 6 118 4 2 2 40 59 -6.791 -6.998 -0.059 -5.412 -3.898 -3.711 -3.767 -0.029 -2.775 -4.357 1.546 -3.449 -3.775 0.274 -4.163 -1.619 3.167 -4.059 -0.458 -2.627 ML 115 113 6 118 4 1 1 40 60 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 4 1 1 40 59 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 117 113 6 118 4 0 0 39 58 -4.568 -4.250 -2.265 -0.520 IL 118 118 5 118 4 1 1 42 61 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 119 119 6 119 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 19 - U - - - ML 120 119 6 122 3 1 1 37 56 -7.819 -0.023 -6.473 -1.223 -1.266 -1.941 1.534 D 121 119 6 122 3 0 0 36 55 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 20 - U - - - ML 123 122 3 125 3 1 1 36 55 -7.819 -0.023 -6.473 -1.223 -1.266 -1.941 1.534 D 124 122 3 125 3 0 0 35 54 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 21 - U - - - ML 126 125 3 128 3 1 1 35 54 -7.819 -0.023 -6.473 -1.223 -1.266 -1.941 1.534 D 127 125 3 128 3 0 0 34 53 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 37 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 22 - A - - - ML 129 128 3 131 3 1 1 34 53 -7.819 -0.023 -6.473 1.648 -2.081 -1.742 -1.596 D 130 128 3 131 3 0 0 33 52 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 23 - G - - - ML 132 131 3 134 3 1 1 33 51 -8.220 -0.021 -6.537 -1.270 -2.439 1.641 -1.824 D 133 131 3 134 3 0 0 31 50 -5.620 -0.734 -1.403 IL 134 134 3 134 3 1 1 34 52 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 41 - U - - MR 135 134 3 137 3 1 1 32 50 -8.220 -0.021 -6.537 -1.223 -1.266 -1.941 1.534 D 136 134 3 137 3 0 0 30 49 -6.390 -1.568 -0.620 IR 137 137 3 137 3 1 1 33 51 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 40 - U - - MR 138 137 3 140 3 1 1 31 49 -8.220 -0.021 -6.537 -1.223 -1.266 -1.941 1.534 D 139 137 3 140 3 0 0 29 48 -6.390 -1.568 -0.620 IR 140 140 3 140 3 1 1 32 50 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 39 - U - - MR 141 140 3 143 3 1 1 30 48 -8.220 -0.021 -6.537 -1.223 -1.266 -1.941 1.534 D 142 140 3 143 3 0 0 28 47 -6.390 -1.568 -0.620 IR 143 143 3 143 3 1 1 31 49 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 38 - C - - MR 144 143 3 146 3 1 1 29 47 -8.220 -0.021 -6.537 -1.395 1.516 -2.205 -0.880 D 145 143 3 146 3 0 0 27 46 -6.390 -1.568 -0.620 IR 146 146 3 146 3 1 1 29 48 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 37 - U - - MR 147 146 3 149 3 1 1 28 46 -8.220 -0.021 -6.537 -1.223 -1.266 -1.941 1.534 D 148 146 3 149 3 0 0 26 45 -6.390 -1.568 -0.620 IR 149 149 3 149 3 1 1 28 47 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 36 - U - - MR 150 149 3 152 3 1 1 27 45 -8.220 -0.021 -6.537 -1.223 -1.266 -1.941 1.534 D 151 149 3 152 3 0 0 25 44 -6.390 -1.568 -0.620 IR 152 152 3 152 3 1 1 27 46 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 35 - A - - MR 153 152 3 155 5 1 1 26 44 -6.968 -0.043 -6.783 -6.995 -7.887 1.648 -2.081 -1.742 -1.596 D 154 152 3 155 5 0 0 24 43 -5.352 -0.707 -2.978 -4.409 -2.404 IR 155 155 3 155 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 24 34 U A - - MP 156 155 3 160 6 2 2 25 43 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -3.898 -3.711 -3.767 -0.029 -2.775 -4.357 1.546 -3.449 -3.775 0.274 -4.163 -1.619 3.167 -4.059 -0.458 -2.627 ML 157 155 3 160 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 3 160 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 3 160 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 25 33 G C - - MP 162 161 6 166 6 2 2 23 41 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -4.462 -2.962 -4.539 0.383 -4.838 -4.581 -0.271 -4.759 -4.139 3.563 -4.497 -0.652 -0.665 -4.283 -2.294 -3.421 ML 163 161 6 166 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 165 161 6 166 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 166 166 5 166 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 167 167 6 167 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 26 32 A U - - MP 168 167 6 172 6 2 2 21 39 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -3.561 -2.654 -3.595 3.158 -3.820 -4.864 0.465 -3.650 -3.498 1.328 -4.034 -0.171 0.047 -4.089 -1.477 -2.444 ML 169 167 6 172 6 1 1 20 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 170 167 6 172 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 171 167 6 172 6 0 0 18 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 172 172 5 172 6 1 1 21 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 173 173 6 173 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 27 31 U A - - MP 174 173 6 178 4 2 2 19 37 -6.791 -6.998 -0.059 -5.412 -3.898 -3.711 -3.767 -0.029 -2.775 -4.357 1.546 -3.449 -3.775 0.274 -4.163 -1.619 3.167 -4.059 -0.458 -2.627 ML 175 173 6 178 4 1 1 20 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 176 173 6 178 4 1 1 19 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 177 173 6 178 4 0 0 18 37 -4.568 -4.250 -2.265 -0.520 IL 178 178 5 178 4 1 1 21 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 179 179 6 179 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 28 - C - - - ML 180 179 6 182 3 1 1 15 33 -7.819 -0.023 -6.473 -1.395 1.516 -2.205 -0.880 D 181 179 6 182 3 0 0 15 33 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 29 - A - - - ML 183 182 3 185 3 1 1 13 32 -7.819 -0.023 -6.473 1.648 -2.081 -1.742 -1.596 D 184 182 3 185 3 0 0 13 32 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 30 - C - - - ML 186 185 3 188 2 1 1 1 1 * 0.000 -1.395 1.516 -2.205 -0.880 D 187 185 3 188 2 0 0 0 0 * 0.000 IL 188 188 3 188 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 189 188 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-2187 ACC RF03272 DESC mir-2187 microRNA precursor family LENG 62 MAXL 149 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 9 22:19:28 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03272/CM NSEQ 2 EFFN 1.761719 CKSUM 1818575567 STATS LOCAL MSV -8.0028 0.72542 STATS LOCAL VITERBI -9.1713 0.72542 STATS LOCAL FORWARD -3.6259 0.72542 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.40899 1.51292 1.57854 1.11149 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.33322 2.34541 2.83728 0.28952 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.33322 2.34541 2.83728 0.28952 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.21551 2.93915 2.69319 2.61325 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 0.48836 2.42642 1.58677 2.37051 4 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.65633 1.67797 2.36849 0.43168 5 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.65743 1.67798 2.36890 0.43150 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.48778 2.42787 1.58686 2.37282 7 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.39490 2.92573 0.22493 2.87138 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.66511 1.43903 2.41684 0.50410 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 0.48791 2.42754 1.58684 2.37229 10 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.65619 1.67797 2.36844 0.43170 11 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.48800 2.42732 1.58682 2.37193 12 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.39367 2.92448 0.22528 2.86958 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.89599 0.32667 2.63249 1.88695 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.89573 0.32671 2.63238 1.88691 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.65500 1.67796 2.36800 0.43189 16 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.39316 2.92397 0.22543 2.86884 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.65476 1.67796 2.36791 0.43193 18 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.33322 2.34541 2.83728 0.28952 19 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.33322 2.34541 2.83728 0.28952 20 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.33322 2.34541 2.83728 0.28952 21 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.21551 2.93915 2.69319 2.61325 22 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.38519 3.21540 0.21523 2.78978 23 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.65291 1.67795 2.36721 0.43224 24 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.39410 2.92492 0.22516 2.87021 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.48781 2.42780 1.58685 2.37270 26 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.65752 1.67798 2.36893 0.43148 27 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.48415 0.29187 3.05129 2.10013 28 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 0.21551 2.93915 2.69319 2.61325 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.48415 0.29187 3.05129 2.10013 30 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.49084 2.54759 1.51468 2.41089 31 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.60566 1.84752 2.24364 0.41182 32 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 3.09333 0.26276 2.75890 2.10077 33 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.49026 2.54936 1.51467 2.41330 34 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.21551 2.93915 2.69319 2.61325 35 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.33322 2.34541 2.83728 0.28952 36 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.33322 2.34541 2.83728 0.28952 37 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.48415 0.29187 3.05129 2.10013 38 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.33322 2.34541 2.83728 0.28952 39 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.33322 2.34541 2.83728 0.28952 40 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.33322 2.34541 2.83728 0.28952 41 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.49144 2.54573 1.51468 2.40835 42 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 3.08134 0.26424 2.75406 2.09845 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.49141 2.54585 1.51468 2.40851 44 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.16030 2.79860 0.28314 2.65355 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.16042 2.79874 0.28309 2.65373 46 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 3.08281 0.26406 2.75466 2.09873 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.60151 1.84726 2.24232 0.41255 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 0.49121 2.54645 1.51468 2.40933 49 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.60240 1.84731 2.24261 0.41240 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 1.94067 2.58915 0.36823 2.41518 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 3.08738 0.26349 2.75650 2.09962 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.60461 1.84745 2.24331 0.41200 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 0.49068 2.54808 1.51468 2.41155 54 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 0.49048 2.54866 1.51467 2.41235 55 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 2.60876 1.84772 2.24462 0.41127 56 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 2.48415 0.29187 3.05129 2.10013 57 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 2.33322 2.34541 2.83728 0.28952 58 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 0.21551 2.93915 2.69319 2.61325 59 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 2.33322 2.34541 2.83728 0.28952 60 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 2.38519 3.21540 0.21523 2.78978 61 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 62 2.48415 0.29187 3.05129 2.10013 62 C - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //