INFERNAL1/a [1.1.5 | Sep 2023] NAME MIR3712 ACC RF03270 DESC MIR3712 microRNA precursor family STATES 199 NODES 45 CLEN 65 W 81 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 9 18:49:46 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03270/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.628906 CKSUM 3620539902 NULL 0.000 0.000 0.000 0.000 GA 94.00 TC 94.70 NC 41.40 EFP7GF -6.3344 0.72595 ECMLC 0.66435 -4.82882 3.99876 1600000 422824 0.002838 ECMGC 0.46016 -14.47559 -1.58992 1600000 150385 0.002660 ECMLI 0.64227 -3.46598 5.21494 1600000 316663 0.003790 ECMGI 0.49871 -9.57676 1.38041 1600000 94454 0.004235 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 81 100 -6.819 -7.026 -0.058 -5.440 IL 1 1 2 1 4 1 14 85 105 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 14 84 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 14 81 100 -7.845 -0.022 -6.499 -1.326 -2.504 1.658 -1.889 D 4 2 3 5 3 0 7 79 99 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 13 83 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 1 13 80 99 -8.244 -0.020 -6.561 1.662 -2.133 -1.789 -1.653 D 7 5 3 8 3 0 6 78 98 -5.620 -0.734 -1.403 IL 8 8 3 8 3 1 11 80 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 65 - A - - MR 9 8 3 11 5 1 12 79 98 -6.990 -0.042 -6.805 -7.018 -7.909 1.662 -2.133 -1.789 -1.653 D 10 8 3 11 5 0 4 77 97 -5.352 -0.707 -2.978 -4.409 -2.404 IR 11 11 3 11 5 1 9 79 98 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 64 G C - - MP 12 11 3 16 6 2 13 78 97 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -4.513 -2.985 -4.593 0.350 -4.910 -4.602 -0.330 -4.818 -4.174 3.578 -4.528 -0.677 -0.723 -4.317 -2.356 -3.474 ML 13 11 3 16 6 1 6 76 96 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 3 16 6 1 6 76 96 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 3 16 6 0 2 74 93 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 1 8 77 97 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 1 8 77 96 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 63 A U - - MP 18 17 6 22 6 2 11 76 95 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -3.601 -2.683 -3.632 3.192 -3.877 -4.923 0.411 -3.686 -3.533 1.285 -4.071 -0.192 -0.007 -4.142 -1.531 -2.478 ML 19 17 6 22 6 1 6 74 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 1 6 74 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 0 1 72 91 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 1 7 75 95 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 1 8 75 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 62 U A - - MP 24 23 6 28 6 2 10 74 93 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -3.948 -3.764 -3.812 -0.078 -2.808 -4.398 1.514 -3.486 -3.820 0.216 -4.205 -1.671 3.198 -4.108 -0.490 -2.667 ML 25 23 6 28 6 1 5 72 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 1 5 72 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 0 1 70 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 1 7 73 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 1 7 73 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 61 g u - - MP 30 29 6 34 6 2 8 72 91 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -3.468 -2.296 -3.622 1.220 -4.216 -4.945 0.148 -3.667 -3.326 1.557 -3.840 2.908 -0.213 -4.182 -1.793 -2.356 ML 31 29 6 34 6 1 4 70 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 1 4 70 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 0 1 68 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 6 71 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 6 71 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 60 U A - - MP 36 35 6 40 4 2 7 70 89 -6.746 -7.992 -0.088 -4.445 -3.948 -3.764 -3.812 -0.078 -2.808 -4.398 1.514 -3.486 -3.820 0.216 -4.205 -1.671 3.198 -4.108 -0.490 -2.667 ML 37 35 6 40 4 1 2 69 89 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 4 1 3 69 88 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 39 35 6 40 4 0 1 67 86 -12.737 -14.007 -2.036 -0.404 IL 40 40 5 40 4 1 4 69 89 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 41 41 6 41 3 1 5 69 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 59 - A - - MR 42 41 6 44 5 1 7 68 87 -6.990 -0.042 -6.805 -7.018 -7.909 1.662 -2.133 -1.789 -1.653 D 43 41 6 44 5 0 0 66 86 -5.352 -0.707 -2.978 -4.409 -2.404 IR 44 44 3 44 5 1 4 68 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 58 g c - - MP 45 44 3 49 6 2 8 67 86 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -3.572 -2.459 -3.631 1.053 -4.157 -4.405 0.261 -3.910 -3.551 2.931 -3.998 1.533 -0.029 -3.739 -1.689 -2.517 ML 46 44 3 49 6 1 2 65 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 3 49 6 1 2 65 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 3 49 6 0 0 63 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 3 66 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 3 66 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 57 A U - - MP 51 50 6 55 6 2 7 65 84 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -3.601 -2.683 -3.632 3.192 -3.877 -4.923 0.411 -3.686 -3.533 1.285 -4.071 -0.192 -0.007 -4.142 -1.531 -2.478 ML 52 50 6 55 6 1 2 63 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 2 63 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 61 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 3 64 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 3 64 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 10 56 u a - - MP 57 56 6 61 6 2 7 63 82 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -2.408 -2.397 -2.519 0.860 -2.204 -3.294 1.665 -2.664 -2.576 1.195 -3.087 -0.677 1.966 0.721 -0.138 -1.641 ML 58 56 6 61 6 1 2 61 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 2 61 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 59 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 2 62 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 3 62 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 11 55 C G - - MP 63 62 6 67 6 2 6 61 80 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -4.312 -4.195 -4.041 -0.451 -2.813 -4.483 3.470 -3.599 -4.083 -0.173 -4.368 -2.140 0.723 -4.396 -0.515 -2.931 ML 64 62 6 67 6 1 1 59 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 59 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 57 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 2 60 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 2 60 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 12 54 a u - - MP 69 68 6 73 6 2 6 59 78 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -2.844 1.278 -2.982 2.197 -3.260 -3.967 0.677 -3.216 -2.926 1.765 -3.439 0.089 0.418 -3.226 -1.107 -1.958 ML 70 68 6 73 6 1 1 57 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 57 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 55 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 2 58 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 2 58 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 13 53 A U - - MP 75 74 6 79 6 2 4 57 76 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -3.601 -2.683 -3.632 3.192 -3.877 -4.923 0.411 -3.686 -3.533 1.285 -4.071 -0.192 -0.007 -4.142 -1.531 -2.478 ML 76 74 6 79 6 1 1 56 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 55 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 54 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 2 56 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 2 56 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 14 52 G C - - MP 81 80 6 85 4 2 3 55 74 -6.819 -7.026 -0.058 -5.440 -4.513 -2.985 -4.593 0.350 -4.910 -4.602 -0.330 -4.818 -4.174 3.578 -4.528 -0.677 -0.723 -4.317 -2.356 -3.474 ML 82 80 6 85 4 1 1 55 75 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 4 1 1 54 74 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 84 80 6 85 4 0 0 53 73 -4.568 -4.250 -2.265 -0.520 IL 85 85 5 85 4 1 1 56 76 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 86 86 6 86 3 1 1 55 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 15 - A - - - ML 87 86 6 89 3 1 2 52 71 -7.845 -0.022 -6.499 1.662 -2.133 -1.789 -1.653 D 88 86 6 89 3 0 0 51 70 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 1 54 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 16 - U - - - ML 90 89 3 92 3 1 2 51 70 -7.845 -0.022 -6.499 -1.269 -1.304 -1.991 1.550 D 91 89 3 92 3 0 0 50 69 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 1 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 17 - C - - - ML 93 92 3 95 3 1 1 50 69 -8.244 -0.020 -6.561 -1.456 1.537 -2.269 -0.929 D 94 92 3 95 3 0 0 49 68 -5.620 -0.734 -1.403 IL 95 95 3 95 3 1 1 51 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 51 - a - - MR 96 95 3 98 3 1 1 49 68 -8.244 -0.020 -6.561 0.682 -1.295 0.459 -0.703 D 97 95 3 98 3 0 0 47 67 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 1 50 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 50 - U - - MR 99 98 3 101 3 1 1 48 67 -8.244 -0.020 -6.561 -1.269 -1.304 -1.991 1.550 D 100 98 3 101 3 0 0 46 66 -6.390 -1.568 -0.620 IR 101 101 3 101 3 1 1 49 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 49 - u - - MR 102 101 3 104 5 1 1 47 66 -6.990 -0.042 -6.805 -7.018 -7.909 -0.612 0.416 -1.378 0.702 D 103 101 3 104 5 0 0 46 65 -5.352 -0.707 -2.978 -4.409 -2.404 IR 104 104 3 104 5 1 1 47 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 18 48 A U - - MP 105 104 3 109 6 2 2 46 65 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -3.601 -2.683 -3.632 3.192 -3.877 -4.923 0.411 -3.686 -3.533 1.285 -4.071 -0.192 -0.007 -4.142 -1.531 -2.478 ML 106 104 3 109 6 1 1 44 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 3 109 6 1 1 44 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 3 109 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 45 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 19 47 G C - - MP 111 110 6 115 6 2 2 44 63 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -4.513 -2.985 -4.593 0.350 -4.910 -4.602 -0.330 -4.818 -4.174 3.578 -4.528 -0.677 -0.723 -4.317 -2.356 -3.474 ML 112 110 6 115 6 1 1 42 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 42 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 43 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 20 46 A U - - MP 117 116 6 121 6 2 2 42 61 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -3.601 -2.683 -3.632 3.192 -3.877 -4.923 0.411 -3.686 -3.533 1.285 -4.071 -0.192 -0.007 -4.142 -1.531 -2.478 ML 118 116 6 121 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 40 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 38 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 41 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 21 45 C G - - MP 123 122 6 127 6 2 2 40 59 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -4.312 -4.195 -4.041 -0.451 -2.813 -4.483 3.470 -3.599 -4.083 -0.173 -4.368 -2.140 0.723 -4.396 -0.515 -2.931 ML 124 122 6 127 6 1 1 39 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 37 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 39 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 22 44 u g - - MP 129 128 6 133 4 2 2 38 57 -6.819 -7.026 -0.058 -5.440 -3.852 -3.762 -3.608 -0.121 -2.444 -4.074 1.836 -3.192 -3.646 0.114 -3.964 -1.771 1.023 -3.959 2.837 -2.530 ML 130 128 6 133 4 1 1 38 58 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 4 1 1 38 57 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 132 128 6 133 4 0 0 37 56 -4.568 -4.250 -2.265 -0.520 IL 133 133 5 133 4 1 1 40 59 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 134 134 6 134 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 23 - a - - - ML 135 134 6 137 3 1 1 35 54 -7.845 -0.022 -6.499 0.597 0.215 -1.034 -0.255 D 136 134 6 137 3 0 0 34 53 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 24 - C - - - ML 138 137 3 140 3 1 1 34 53 -8.244 -0.020 -6.561 -1.456 1.537 -2.269 -0.929 D 139 137 3 140 3 0 0 33 52 -5.620 -0.734 -1.403 IL 140 140 3 140 3 1 1 35 54 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 43 - A - - MR 141 140 3 143 5 1 1 33 52 -6.990 -0.042 -6.805 -7.018 -7.909 1.662 -2.133 -1.789 -1.653 D 142 140 3 143 5 0 0 32 51 -5.352 -0.707 -2.978 -4.409 -2.404 IR 143 143 3 143 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 25 42 C G - - MP 144 143 3 148 6 2 2 32 51 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -4.312 -4.195 -4.041 -0.451 -2.813 -4.483 3.470 -3.599 -4.083 -0.173 -4.368 -2.140 0.723 -4.396 -0.515 -2.931 ML 145 143 3 148 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 3 148 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 3 148 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 26 41 A U - - MP 150 149 6 154 6 2 2 30 49 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -3.601 -2.683 -3.632 3.192 -3.877 -4.923 0.411 -3.686 -3.533 1.285 -4.071 -0.192 -0.007 -4.142 -1.531 -2.478 ML 151 149 6 154 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 27 40 A U - - MP 156 155 6 160 6 2 2 28 47 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -3.601 -2.683 -3.632 3.192 -3.877 -4.923 0.411 -3.686 -3.533 1.285 -4.071 -0.192 -0.007 -4.142 -1.531 -2.478 ML 157 155 6 160 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 6 160 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 28 39 A U - - MP 162 161 6 166 6 2 2 26 45 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -3.601 -2.683 -3.632 3.192 -3.877 -4.923 0.411 -3.686 -3.533 1.285 -4.071 -0.192 -0.007 -4.142 -1.531 -2.478 ML 163 161 6 166 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 165 161 6 166 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 166 166 5 166 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 167 167 6 167 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 29 38 U A - - MP 168 167 6 172 4 2 2 24 43 -6.819 -7.026 -0.058 -5.440 -3.948 -3.764 -3.812 -0.078 -2.808 -4.398 1.514 -3.486 -3.820 0.216 -4.205 -1.671 3.198 -4.108 -0.490 -2.667 ML 169 167 6 172 4 1 1 25 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 170 167 6 172 4 1 1 24 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 171 167 6 172 4 0 0 23 42 -4.568 -4.250 -2.265 -0.520 IL 172 172 5 172 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 173 173 6 173 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 30 - C - - - ML 174 173 6 176 3 1 1 21 40 -7.845 -0.022 -6.499 -1.456 1.537 -2.269 -0.929 D 175 173 6 176 3 0 0 20 39 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 31 - C - - - ML 177 176 3 179 3 1 1 20 39 -7.845 -0.022 -6.499 -1.456 1.537 -2.269 -0.929 D 178 176 3 179 3 0 0 19 38 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 32 - u - - - ML 180 179 3 182 3 1 1 19 38 -7.845 -0.022 -6.499 0.535 -0.791 -0.992 0.557 D 181 179 3 182 3 0 0 18 37 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 33 - A - - - ML 183 182 3 185 3 1 1 18 36 -7.845 -0.022 -6.499 1.662 -2.133 -1.789 -1.653 D 184 182 3 185 3 0 0 17 36 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 34 - C - - - ML 186 185 3 188 3 1 1 16 35 -7.845 -0.022 -6.499 -1.456 1.537 -2.269 -0.929 D 187 185 3 188 3 0 0 16 34 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 35 - A - - - ML 189 188 3 191 3 1 1 15 33 -7.845 -0.022 -6.499 1.662 -2.133 -1.789 -1.653 D 190 188 3 191 3 0 0 15 33 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 36 - G - - - ML 192 191 3 194 3 1 1 13 32 -7.845 -0.022 -6.499 -1.326 -2.504 1.658 -1.889 D 193 191 3 194 3 0 0 13 32 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 37 - C - - - ML 195 194 3 197 2 1 1 1 1 * 0.000 -1.456 1.537 -2.269 -0.929 D 196 194 3 197 2 0 0 0 0 * 0.000 IL 197 197 3 197 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 198 197 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME MIR3712 ACC RF03270 DESC MIR3712 microRNA precursor family LENG 65 MAXL 153 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 9 18:49:46 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03270/CM NSEQ 2 EFFN 1.863281 CKSUM 3620539902 STATS LOCAL MSV -8.3078 0.72595 STATS LOCAL VITERBI -9.2351 0.72595 STATS LOCAL FORWARD -3.0524 0.72595 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.28692 1.42111 1.47357 1.37307 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.44436 3.28419 0.20038 2.85893 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.20259 2.99472 2.74315 2.67411 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.42960 2.98492 0.21327 2.92902 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 0.45725 2.48846 1.62954 2.43132 4 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.71283 1.71587 2.43094 0.40663 5 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 1.81606 2.64785 0.37486 2.53649 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.71188 1.71586 2.43058 0.40678 7 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 1.90615 2.52566 0.38574 2.39255 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 0.45874 2.48449 1.62918 2.42515 9 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 1.94749 1.49727 1.67361 0.80731 10 u - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.94728 0.30921 2.69297 1.92543 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.70910 2.23426 1.28744 2.08053 12 a - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.45775 2.48713 1.62942 2.42926 13 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.42800 2.98324 0.21371 2.92661 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 0.20259 2.99472 2.74315 2.67411 15 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.38374 2.38693 2.89058 0.27399 16 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.55065 0.27223 3.12029 2.15294 17 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 0.45787 2.48681 1.62939 2.42876 18 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.42933 2.98463 0.21335 2.92861 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.45738 2.48811 1.62951 2.43078 20 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.95272 0.30843 2.69533 1.92631 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.71623 1.46294 2.47519 0.48098 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 0.95791 1.21427 2.14501 1.59794 23 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.55065 0.27223 3.12029 2.15294 24 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.94902 0.30896 2.69372 1.92571 25 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.45741 2.48802 1.62950 2.43065 26 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 0.45733 2.48825 1.62952 2.43100 27 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 0.45734 2.48821 1.62952 2.43094 28 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.71151 1.71585 2.43043 0.40684 29 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.55065 0.27223 3.12029 2.15294 30 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.55065 0.27223 3.12029 2.15294 31 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 1.00573 1.96440 2.10692 0.98786 32 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.20259 2.99472 2.74315 2.67411 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.55065 0.27223 3.12029 2.15294 34 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.20259 2.99472 2.74315 2.67411 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.44436 3.28419 0.20038 2.85893 36 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.55065 0.27223 3.12029 2.15294 37 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 0.46256 2.60996 1.55263 2.46388 38 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.66233 1.89611 2.30307 0.38550 39 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.66362 1.89621 2.30349 0.38528 40 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.66524 1.89633 2.30403 0.38501 41 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.20468 2.86639 0.26577 2.71510 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.20259 2.99472 2.74315 2.67411 43 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 1.97293 2.64868 0.34928 2.46498 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.20194 2.86302 0.26679 2.71079 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.66336 1.89619 2.30341 0.38532 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 3.15019 0.24944 2.81935 2.13476 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.66692 1.89646 2.30458 0.38473 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 1.86135 1.07261 2.39887 0.88770 49 u - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.38374 2.38693 2.89058 0.27399 50 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 0.89997 2.33868 1.04450 1.93037 51 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 3.13771 0.25089 2.81422 2.13234 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.65825 1.89580 2.30173 0.38618 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 2.30266 0.96800 2.03780 0.94199 54 u - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.20031 2.86103 0.26740 2.70824 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 1.23838 1.31608 1.31737 1.74799 56 a - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 2.66031 1.89596 2.30241 0.38584 57 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 2.63230 0.69250 2.34555 1.10271 58 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 0.20259 2.99472 2.74315 2.67411 59 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 0.46252 2.61010 1.55264 2.46408 60 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 2.75477 1.70453 2.45222 0.40284 61 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 62 0.46218 2.61121 1.55266 2.46555 62 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 63 2.66585 1.89638 2.30423 0.38491 63 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 64 3.15582 0.24879 2.82165 2.13584 64 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 65 0.20259 2.99472 2.74315 2.67411 65 A - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //