INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-1911 ACC RF03268 DESC mir-1911 microRNA precursor family STATES 181 NODES 41 CLEN 59 W 75 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 8 03:01:20 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03268/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.566406 CKSUM 1064050725 NULL 0.000 0.000 0.000 0.000 GA 88.00 TC 88.00 NC 87.50 EFP7GF -4.3452 0.72689 ECMLC 0.64726 -5.52515 3.43546 1600000 396306 0.003028 ECMGC 0.47255 -15.32221 -2.85790 1600000 144564 0.002767 ECMLI 0.64014 -4.06439 4.46588 1600000 282288 0.004251 ECMGI 0.51655 -10.73794 -0.04105 1600000 100401 0.003984 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 75 95 -6.791 -6.998 -0.059 -5.412 IL 1 1 2 1 4 1 13 79 99 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 13 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 13 75 95 -8.220 -0.021 -6.537 -1.223 -1.266 -1.941 1.534 D 4 2 3 5 3 0 8 74 94 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 11 76 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 59 - C - - MR 6 5 3 8 3 1 12 74 94 -8.220 -0.021 -6.537 -1.395 1.516 -2.205 -0.880 D 7 5 3 8 3 0 6 72 92 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 11 75 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 58 - G - - MR 9 8 3 11 3 1 11 73 93 -8.220 -0.021 -6.537 -1.270 -2.439 1.641 -1.824 D 10 8 3 11 3 0 6 72 91 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 10 74 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 57 - u - - MR 12 11 3 14 5 1 11 72 92 -6.968 -0.043 -6.783 -6.995 -7.887 -0.592 0.405 -1.355 0.697 D 13 11 3 14 5 0 5 71 91 -5.352 -0.707 -2.978 -4.409 -2.404 IR 14 14 3 14 5 1 8 72 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 2 56 G C - - MP 15 14 3 19 6 2 11 71 91 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -4.462 -2.962 -4.539 0.383 -4.838 -4.581 -0.271 -4.759 -4.139 3.563 -4.497 -0.652 -0.665 -4.283 -2.294 -3.421 ML 16 14 3 19 6 1 7 70 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 3 19 6 1 6 70 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 3 19 6 0 2 67 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 8 71 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 8 70 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 3 55 A U - - MP 21 20 6 25 6 2 10 69 89 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -3.561 -2.654 -3.595 3.158 -3.820 -4.864 0.465 -3.650 -3.498 1.328 -4.034 -0.171 0.047 -4.089 -1.477 -2.444 ML 22 20 6 25 6 1 6 68 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 4 68 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 2 66 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 7 69 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 7 68 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 4 54 G C - - MP 27 26 6 31 4 2 8 67 87 -6.791 -6.998 -0.059 -5.412 -4.462 -2.962 -4.539 0.383 -4.838 -4.581 -0.271 -4.759 -4.139 3.563 -4.497 -0.652 -0.665 -4.283 -2.294 -3.421 ML 28 26 6 31 4 1 5 67 87 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 4 1 3 67 87 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 30 26 6 31 4 0 2 66 86 -4.568 -4.250 -2.265 -0.520 IL 31 31 5 31 4 1 7 69 89 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 32 32 6 32 3 1 6 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 5 - U - - - ML 33 32 6 35 5 1 7 65 84 -6.968 -0.043 -6.783 -6.995 -7.887 -1.223 -1.266 -1.941 1.534 D 34 32 6 35 5 0 1 63 83 -4.959 -0.803 -4.221 -2.596 -2.508 IL 35 35 3 35 5 1 5 65 85 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 6 53 A U - - MP 36 35 3 40 6 2 8 64 83 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -3.561 -2.654 -3.595 3.158 -3.820 -4.864 0.465 -3.650 -3.498 1.328 -4.034 -0.171 0.047 -4.089 -1.477 -2.444 ML 37 35 3 40 6 1 3 62 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 3 40 6 1 3 62 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 3 40 6 0 0 60 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 4 63 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 4 63 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 7 52 C G - - MP 42 41 6 46 6 2 8 62 81 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -4.260 -4.138 -3.998 -0.399 -2.783 -4.447 3.450 -3.563 -4.039 -0.113 -4.329 -2.083 0.759 -4.348 -0.484 -2.889 ML 43 41 6 46 6 1 3 60 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 3 60 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 0 58 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 4 61 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 4 61 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 8 51 C G - - MP 48 47 6 52 6 2 7 60 79 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -4.260 -4.138 -3.998 -0.399 -2.783 -4.447 3.450 -3.563 -4.039 -0.113 -4.329 -2.083 0.759 -4.348 -0.484 -2.889 ML 49 47 6 52 6 1 2 58 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 2 58 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 0 56 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 3 59 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 3 59 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 9 50 g u - - MP 54 53 6 58 6 2 5 58 77 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -3.437 -2.279 -3.587 1.237 -4.156 -4.887 0.202 -3.637 -3.302 1.599 -3.814 2.865 -0.159 -4.128 -1.738 -2.329 ML 55 53 6 58 6 1 2 57 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 2 57 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 0 55 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 3 57 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 3 57 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 10 49 C G - - MP 60 59 6 64 4 2 4 56 75 -6.791 -6.998 -0.059 -5.412 -4.260 -4.138 -3.998 -0.399 -2.783 -4.447 3.450 -3.563 -4.039 -0.113 -4.329 -2.083 0.759 -4.348 -0.484 -2.889 ML 61 59 6 64 4 1 1 56 76 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 4 1 1 56 75 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 63 59 6 64 4 0 0 54 74 -4.568 -4.250 -2.265 -0.520 IL 64 64 5 64 4 1 2 57 77 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 65 65 6 65 3 1 2 56 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 11 - C - - - ML 66 65 6 68 3 1 2 53 73 -8.220 -0.021 -6.537 -1.395 1.516 -2.205 -0.880 D 67 65 6 68 3 0 0 52 71 -5.620 -0.734 -1.403 IL 68 68 3 68 3 1 1 54 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 48 - U - - MR 69 68 3 71 5 1 2 52 72 -6.968 -0.043 -6.783 -6.995 -7.887 -1.223 -1.266 -1.941 1.534 D 70 68 3 71 5 0 0 51 70 -5.352 -0.707 -2.978 -4.409 -2.404 IR 71 71 3 71 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 47 A U - - MP 72 71 3 76 6 2 3 51 71 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -3.561 -2.654 -3.595 3.158 -3.820 -4.864 0.465 -3.650 -3.498 1.328 -4.034 -0.171 0.047 -4.089 -1.477 -2.444 ML 73 71 3 76 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 3 76 6 0 0 47 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 51 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 46 U A - - MP 78 77 6 82 6 2 3 49 69 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -3.898 -3.711 -3.767 -0.029 -2.775 -4.357 1.546 -3.449 -3.775 0.274 -4.163 -1.619 3.167 -4.059 -0.458 -2.627 ML 79 77 6 82 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 45 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 45 G C - - MP 84 83 6 88 6 2 3 47 67 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -4.462 -2.962 -4.539 0.383 -4.838 -4.581 -0.271 -4.759 -4.139 3.563 -4.497 -0.652 -0.665 -4.283 -2.294 -3.421 ML 85 83 6 88 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 43 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 15 44 u g - - MP 90 89 6 94 6 2 3 45 65 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -3.801 -3.709 -3.569 -0.073 -2.421 -4.043 1.857 -3.165 -3.607 0.172 -3.930 -1.719 1.051 -3.913 2.795 -2.493 ML 91 89 6 94 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 41 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 16 43 C G - - MP 96 95 6 100 6 2 2 43 63 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -4.260 -4.138 -3.998 -0.399 -2.783 -4.447 3.450 -3.563 -4.039 -0.113 -4.329 -2.083 0.759 -4.348 -0.484 -2.889 ML 97 95 6 100 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 17 42 U A - - MP 102 101 6 106 6 2 2 41 61 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -3.898 -3.711 -3.767 -0.029 -2.775 -4.357 1.546 -3.449 -3.775 0.274 -4.163 -1.619 3.167 -4.059 -0.458 -2.627 ML 103 101 6 106 6 1 1 40 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 40 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 18 41 G C - - MP 108 107 6 112 4 2 2 39 59 -6.791 -6.998 -0.059 -5.412 -4.462 -2.962 -4.539 0.383 -4.838 -4.581 -0.271 -4.759 -4.139 3.563 -4.497 -0.652 -0.665 -4.283 -2.294 -3.421 ML 109 107 6 112 4 1 1 40 59 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 4 1 1 39 59 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 111 107 6 112 4 0 0 38 58 -4.568 -4.250 -2.265 -0.520 IL 112 112 5 112 4 1 1 41 61 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 113 113 6 113 3 1 1 40 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - U - - - ML 114 113 6 116 3 1 1 37 56 -8.220 -0.021 -6.537 -1.223 -1.266 -1.941 1.534 D 115 113 6 116 3 0 0 35 55 -5.620 -0.734 -1.403 IL 116 116 3 116 3 1 1 38 57 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 40 - C - - MR 117 116 3 119 5 1 1 36 55 -6.968 -0.043 -6.783 -6.995 -7.887 -1.395 1.516 -2.205 -0.880 D 118 116 3 119 5 0 0 34 54 -5.352 -0.707 -2.978 -4.409 -2.404 IR 119 119 3 119 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 20 39 U A - - MP 120 119 3 124 6 2 2 35 54 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -3.898 -3.711 -3.767 -0.029 -2.775 -4.357 1.546 -3.449 -3.775 0.274 -4.163 -1.619 3.167 -4.059 -0.458 -2.627 ML 121 119 3 124 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 3 124 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 3 124 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 34 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 21 38 G C - - MP 126 125 6 130 6 2 2 33 52 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -4.462 -2.962 -4.539 0.383 -4.838 -4.581 -0.271 -4.759 -4.139 3.563 -4.497 -0.652 -0.665 -4.283 -2.294 -3.421 ML 127 125 6 130 6 1 1 31 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 32 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 22 37 G C - - MP 132 131 6 136 6 2 2 31 50 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -4.462 -2.962 -4.539 0.383 -4.838 -4.581 -0.271 -4.759 -4.139 3.563 -4.497 -0.652 -0.665 -4.283 -2.294 -3.421 ML 133 131 6 136 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 23 36 G C - - MP 138 137 6 142 4 2 2 29 48 -6.791 -6.998 -0.059 -5.412 -4.462 -2.962 -4.539 0.383 -4.838 -4.581 -0.271 -4.759 -4.139 3.563 -4.497 -0.652 -0.665 -4.283 -2.294 -3.421 ML 139 137 6 142 4 1 1 29 49 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 4 1 1 29 48 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 141 137 6 142 4 0 0 28 47 -4.568 -4.250 -2.265 -0.520 IL 142 142 5 142 4 1 1 31 50 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 143 143 6 143 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 24 - C - - - ML 144 143 6 146 3 1 1 26 45 -7.819 -0.023 -6.473 -1.395 1.516 -2.205 -0.880 D 145 143 6 146 3 0 0 25 44 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 28 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 25 - A - - - ML 147 146 3 149 3 1 1 25 44 -7.819 -0.023 -6.473 1.648 -2.081 -1.742 -1.596 D 148 146 3 149 3 0 0 24 43 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 27 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 26 - U - - - ML 150 149 3 152 3 1 1 24 43 -8.220 -0.021 -6.537 -1.223 -1.266 -1.941 1.534 D 151 149 3 152 3 0 0 23 41 -5.620 -0.734 -1.403 IL 152 152 3 152 3 1 1 25 43 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 35 - U - - MR 153 152 3 155 3 1 1 23 42 -8.220 -0.021 -6.537 -1.223 -1.266 -1.941 1.534 D 154 152 3 155 3 0 0 21 40 -6.390 -1.568 -0.620 IR 155 155 3 155 3 1 1 24 42 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 34 - C - - MR 156 155 3 158 3 1 1 22 41 -8.220 -0.021 -6.537 -1.395 1.516 -2.205 -0.880 D 157 155 3 158 3 0 0 20 39 -6.390 -1.568 -0.620 IR 158 158 3 158 3 1 1 23 41 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 33 - U - - MR 159 158 3 161 5 1 1 21 39 -6.968 -0.043 -6.783 -6.995 -7.887 -1.223 -1.266 -1.941 1.534 D 160 158 3 161 5 0 0 20 39 -5.352 -0.707 -2.978 -4.409 -2.404 IR 161 161 3 161 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 27 32 C G - - MP 162 161 3 166 4 2 2 20 38 -6.791 -6.998 -0.059 -5.412 -4.260 -4.138 -3.998 -0.399 -2.783 -4.447 3.450 -3.563 -4.039 -0.113 -4.329 -2.083 0.759 -4.348 -0.484 -2.889 ML 163 161 3 166 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 164 161 3 166 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 165 161 3 166 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 166 166 5 166 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 167 167 6 167 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 28 - C - - - ML 168 167 6 170 3 1 1 16 35 -7.819 -0.023 -6.473 -1.395 1.516 -2.205 -0.880 D 169 167 6 170 3 0 0 16 34 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 29 - A - - - ML 171 170 3 173 3 1 1 15 33 -7.819 -0.023 -6.473 1.648 -2.081 -1.742 -1.596 D 172 170 3 173 3 0 0 15 33 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 30 - C - - - ML 174 173 3 176 3 1 1 13 32 -7.819 -0.023 -6.473 -1.395 1.516 -2.205 -0.880 D 175 173 3 176 3 0 0 13 32 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 31 - A - - - ML 177 176 3 179 2 1 1 1 1 * 0.000 1.648 -2.081 -1.742 -1.596 D 178 176 3 179 2 0 0 0 0 * 0.000 IL 179 179 3 179 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 40 ] - - - - - - E 180 179 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-1911 ACC RF03268 DESC mir-1911 microRNA precursor family LENG 59 MAXL 145 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 8 03:01:20 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03268/CM NSEQ 2 EFFN 1.675781 CKSUM 1064050725 STATS LOCAL MSV -7.5581 0.72689 STATS LOCAL VITERBI -9.0835 0.72689 STATS LOCAL FORWARD -3.0221 0.72689 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.70098 1.19812 1.34329 1.36747 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.28984 2.30985 2.79137 0.30367 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.36277 2.87191 0.23632 2.81800 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.51539 2.37710 1.55108 2.32387 3 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.36531 2.87440 0.23557 2.82163 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.28984 2.30985 2.79137 0.30367 5 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.51545 2.37697 1.55108 2.32366 6 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.85304 0.34235 2.58082 1.85459 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.85315 0.34233 2.58086 1.85460 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 1.77669 2.54181 0.40853 2.43667 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.85236 0.34246 2.58054 1.85448 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.42703 0.31008 2.99175 2.05485 11 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.51584 2.37607 1.55105 2.32220 12 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.61145 1.64662 2.31671 0.45370 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.36515 2.87425 0.23562 2.82141 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.62246 1.41894 2.36715 0.52483 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.85313 0.34233 2.58085 1.85460 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.61191 1.64662 2.31688 0.45362 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.36450 2.87361 0.23581 2.82047 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.28984 2.30985 2.79137 0.30367 19 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.60846 1.64663 2.31564 0.45421 20 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.36443 2.87354 0.23583 2.82037 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.36514 2.87424 0.23562 2.82139 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.36522 2.87432 0.23560 2.82151 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.42703 0.31008 2.99175 2.05485 24 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.22741 2.89116 2.65002 2.56078 25 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.28984 2.30985 2.79137 0.30367 26 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.84767 0.34320 2.57860 1.85376 27 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.42703 0.31008 2.99175 2.05485 28 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 0.22741 2.89116 2.65002 2.56078 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.42703 0.31008 2.99175 2.05485 30 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.22741 2.89116 2.65002 2.56078 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.13116 2.75031 0.29551 2.61400 32 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.28984 2.30985 2.79137 0.30367 33 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.42703 0.31008 2.99175 2.05485 34 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.28984 2.30985 2.79137 0.30367 35 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 3.04042 0.27544 2.70495 2.07089 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 3.04229 0.27520 2.70569 2.07125 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 3.04457 0.27490 2.70659 2.07169 38 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.51573 2.49629 1.48319 2.36841 39 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.42703 0.31008 2.99175 2.05485 40 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 3.03661 0.27594 2.70344 2.07015 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.51650 2.49407 1.48324 2.36530 42 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.12868 2.74744 0.29653 2.61020 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 1.91417 2.53906 0.38496 2.37388 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 3.04230 0.27519 2.70570 2.07126 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 0.51595 2.49566 1.48320 2.36753 46 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.56030 1.80682 2.19437 0.43523 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.28984 2.30985 2.79137 0.30367 48 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 2.12750 2.74607 0.29702 2.60838 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.65329 1.62066 2.34704 0.45231 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.12666 2.74509 0.29736 2.60710 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.12529 2.74350 0.29793 2.60499 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.54423 1.80597 2.18945 0.43824 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 3.04255 0.27516 2.70580 2.07130 54 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.55894 1.80675 2.19395 0.43549 55 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 3.04774 0.27449 2.70785 2.07231 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 1.82082 1.09286 2.35310 0.89703 57 u - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 2.33384 3.15543 0.22915 2.72951 58 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 2.42703 0.31008 2.99175 2.05485 59 C - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //