INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-8229 ACC RF03260 DESC mir-8229 microRNA precursor family STATES 181 NODES 37 CLEN 59 W 74 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 14:45:44 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03260/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.941406 CKSUM 3210952933 NULL 0.000 0.000 0.000 0.000 GA 45.00 TC 45.10 NC 44.80 EFP7GF -5.4402 0.73055 ECMLC 0.67860 -5.06758 3.75247 1600000 477049 0.002515 ECMGC 0.46766 -16.12905 -1.75829 1600000 331757 0.001206 ECMLI 0.62742 -4.68112 4.53995 1600000 390644 0.003072 ECMGI 0.47903 -12.17556 0.82574 1600000 202688 0.001973 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 74 93 -6.869 -8.114 -0.081 -4.568 IL 1 1 2 1 4 1 1 75 94 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 2 76 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 59 - G - - MR 3 2 3 5 5 1 3 74 93 -7.097 -0.039 -6.913 -7.125 -8.017 -1.591 -2.812 1.726 -2.199 D 4 2 3 5 5 0 0 72 92 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 1 1 74 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 58 C G - - MP 6 5 3 10 6 2 4 73 92 -9.109 -9.049 -0.021 -7.825 -8.105 -8.500 -4.566 -4.473 -4.253 -0.703 -2.967 -4.663 3.556 -3.779 -4.303 -0.466 -4.562 -2.420 0.546 -4.634 -0.674 -3.142 ML 7 5 3 10 6 1 1 71 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 1 1 71 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 0 0 69 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 1 1 72 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 1 1 72 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 57 u a - - MP 12 11 6 16 6 2 4 71 90 -9.109 -9.049 -0.021 -7.825 -8.105 -8.500 0.972 -2.406 -2.516 0.835 -2.218 -3.320 1.610 -2.664 -2.558 1.007 -3.083 -0.693 2.032 -2.684 -0.175 -1.642 ML 13 11 6 16 6 1 1 69 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 1 1 69 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 0 0 67 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 1 1 70 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 1 1 70 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 56 U A - - MP 18 17 6 22 6 2 4 69 88 -9.109 -9.049 -0.021 -7.825 -8.105 -8.500 -4.207 -4.032 -4.043 -0.326 -2.982 -4.606 1.347 -3.679 -4.048 -0.075 -4.420 -1.931 3.336 -4.358 -0.657 -2.871 ML 19 17 6 22 6 1 1 67 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 1 1 67 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 0 0 65 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 1 1 68 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 1 1 68 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 55 a u - - MP 24 23 6 28 6 2 3 67 86 -9.109 -9.049 -0.021 -7.825 -8.105 -8.500 -2.816 -2.356 -2.938 2.222 -2.979 -3.936 0.946 -3.123 -2.917 1.390 -3.456 -0.164 0.623 -3.198 -0.858 1.431 ML 25 23 6 28 6 1 1 65 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 1 1 65 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 0 0 63 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 1 1 66 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 1 1 66 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 54 G C - - MP 30 29 6 34 6 2 3 65 84 -9.109 -9.049 -0.021 -7.825 -8.105 -8.500 -4.755 -3.100 -4.855 0.192 -5.251 -4.699 -0.612 -5.099 -4.336 3.641 -4.672 -0.799 -0.997 -4.476 -2.650 -3.731 ML 31 29 6 34 6 1 1 63 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 1 1 63 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 0 0 61 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 1 64 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 1 64 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 53 U G - - MP 36 35 6 40 6 2 3 63 82 -9.109 -9.049 -0.021 -7.825 -8.105 -8.500 -4.102 -4.024 -3.802 -0.357 -2.556 -4.225 1.731 -3.330 -3.842 -0.166 -4.133 -2.024 0.881 -4.187 3.013 -2.713 ML 37 35 6 40 6 1 1 61 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 1 1 61 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 0 0 59 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 1 62 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 1 62 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 52 C G - - MP 42 41 6 46 6 2 3 61 80 -9.109 -9.049 -0.021 -7.825 -8.105 -8.500 -4.566 -4.473 -4.253 -0.703 -2.967 -4.663 3.556 -3.779 -4.303 -0.466 -4.562 -2.420 0.546 -4.634 -0.674 -3.142 ML 43 41 6 46 6 1 1 60 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 1 59 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 0 57 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 1 60 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 1 60 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 8 51 U A - - MP 48 47 6 52 4 2 2 59 78 -6.869 -8.114 -0.081 -4.568 -4.207 -4.032 -4.043 -0.326 -2.982 -4.606 1.347 -3.679 -4.048 -0.075 -4.420 -1.931 3.336 -4.358 -0.657 -2.871 ML 49 47 6 52 4 1 1 58 77 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 4 1 1 58 77 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 51 47 6 52 4 0 0 56 75 -12.737 -14.007 -2.036 -0.404 IL 52 52 5 52 4 1 1 58 77 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 53 53 6 53 3 1 1 59 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 50 - G - - MR 54 53 6 56 5 1 1 57 76 -7.097 -0.039 -6.913 -7.125 -8.017 -1.591 -2.812 1.726 -2.199 D 55 53 6 56 5 0 0 55 75 -5.352 -0.707 -2.978 -4.409 -2.404 IR 56 56 3 56 5 1 1 57 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 49 U A - - MP 57 56 3 61 6 2 2 56 75 -9.109 -9.049 -0.021 -7.825 -8.105 -8.500 -4.207 -4.032 -4.043 -0.326 -2.982 -4.606 1.347 -3.679 -4.048 -0.075 -4.420 -1.931 3.336 -4.358 -0.657 -2.871 ML 58 56 3 61 6 1 1 54 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 3 61 6 1 1 54 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 3 61 6 0 0 52 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 55 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 10 48 C G - - MP 63 62 6 67 6 2 2 54 73 -9.109 -9.049 -0.021 -7.825 -8.105 -8.500 -4.566 -4.473 -4.253 -0.703 -2.967 -4.663 3.556 -3.779 -4.303 -0.466 -4.562 -2.420 0.546 -4.634 -0.674 -3.142 ML 64 62 6 67 6 1 1 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 53 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 11 47 A U - - MP 69 68 6 73 6 2 2 52 71 -9.109 -9.049 -0.021 -7.825 -8.105 -8.500 -3.804 -2.832 -3.822 3.340 -4.166 -5.229 0.135 -3.863 -3.713 1.065 -4.261 -0.306 -0.283 -4.415 -1.806 -2.655 ML 70 68 6 73 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 51 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 12 46 c g - - MP 75 74 6 79 6 2 2 50 69 -9.109 -9.049 -0.021 -7.825 -8.105 -8.500 -3.737 -3.728 -3.575 -0.053 -2.473 -4.094 2.721 -3.209 -3.604 0.158 -3.966 -1.797 1.109 -3.861 1.967 -2.490 ML 76 74 6 79 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 49 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 13 45 G C - - MP 81 80 6 85 6 2 2 48 67 -9.109 -9.049 -0.021 -7.825 -8.105 -8.500 -4.755 -3.100 -4.855 0.192 -5.251 -4.699 -0.612 -5.099 -4.336 3.641 -4.672 -0.799 -0.997 -4.476 -2.650 -3.731 ML 82 80 6 85 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 47 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 14 44 A U - - MP 87 86 6 91 6 2 2 46 65 -9.109 -9.049 -0.021 -7.825 -8.105 -8.500 -3.804 -2.832 -3.822 3.340 -4.166 -5.229 0.135 -3.863 -3.713 1.065 -4.261 -0.306 -0.283 -4.415 -1.806 -2.655 ML 88 86 6 91 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 45 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 15 43 g u - - MP 93 92 6 97 6 2 2 44 63 -9.109 -9.049 -0.021 -7.825 -8.105 -8.500 -2.739 -1.946 -2.995 1.127 -3.194 -3.760 0.651 -3.129 1.480 1.391 -3.201 1.916 0.358 -3.205 -1.101 -1.935 ML 94 92 6 97 6 1 1 42 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 42 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 43 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 16 42 G C - - MP 99 98 6 103 6 2 2 42 61 -9.109 -9.049 -0.021 -7.825 -8.105 -8.500 -4.755 -3.100 -4.855 0.192 -5.251 -4.699 -0.612 -5.099 -4.336 3.641 -4.672 -0.799 -0.997 -4.476 -2.650 -3.731 ML 100 98 6 103 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 17 41 c g - - MP 105 104 6 109 4 2 2 40 59 -6.953 -7.160 -0.053 -5.574 -3.660 -3.588 -3.543 0.153 -2.497 -4.123 2.664 -3.203 -3.554 0.407 -3.948 -1.563 2.321 -3.802 -0.171 -2.425 ML 106 104 6 109 4 1 1 40 60 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 4 1 1 40 59 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 108 104 6 109 4 0 0 39 58 -4.568 -4.250 -2.265 -0.520 IL 109 109 5 109 4 1 1 42 61 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 110 110 6 110 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 18 - U - - - ML 111 110 6 113 5 1 1 37 56 -7.097 -0.039 -6.913 -7.125 -8.017 -1.494 -1.489 -2.228 1.621 D 112 110 6 113 5 0 0 36 55 -4.959 -0.803 -4.221 -2.596 -2.508 IL 113 113 3 113 5 1 1 37 56 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 19 40 g c - - MP 114 113 3 118 6 2 2 36 55 -9.109 -9.049 -0.021 -7.825 -8.105 -8.500 -3.209 -2.517 -3.316 0.842 -3.397 -3.997 0.638 -3.550 -3.266 2.838 1.023 -0.361 0.302 -3.398 -1.201 -2.335 ML 115 113 3 118 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 3 118 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 3 118 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 20 39 A U - - MP 120 119 6 124 6 2 2 34 53 -9.109 -9.049 -0.021 -7.825 -8.105 -8.500 -3.804 -2.832 -3.822 3.340 -4.166 -5.229 0.135 -3.863 -3.713 1.065 -4.261 -0.306 -0.283 -4.415 -1.806 -2.655 ML 121 119 6 124 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 21 38 a u - - MP 126 125 6 130 6 2 2 32 51 -9.109 -9.049 -0.021 -7.825 -8.105 -8.500 1.254 -2.192 -2.660 2.143 -2.727 -3.617 0.975 -2.903 -2.657 1.393 -3.204 -0.137 0.717 -2.883 -0.721 -1.740 ML 127 125 6 130 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 22 37 C G - - MP 132 131 6 136 6 2 2 30 49 -9.109 -9.049 -0.021 -7.825 -8.105 -8.500 -4.566 -4.473 -4.253 -0.703 -2.967 -4.663 3.556 -3.779 -4.303 -0.466 -4.562 -2.420 0.546 -4.634 -0.674 -3.142 ML 133 131 6 136 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 23 36 G C - - MP 138 137 6 142 6 2 2 28 47 -9.109 -9.049 -0.021 -7.825 -8.105 -8.500 -4.755 -3.100 -4.855 0.192 -5.251 -4.699 -0.612 -5.099 -4.336 3.641 -4.672 -0.799 -0.997 -4.476 -2.650 -3.731 ML 139 137 6 142 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 24 35 c g - - MP 144 143 6 148 6 2 2 26 45 -9.109 -9.049 -0.021 -7.825 -8.105 -8.500 -3.737 -3.728 -3.575 -0.053 -2.473 -4.094 2.721 -3.209 -3.604 0.158 -3.966 -1.797 1.109 -3.861 1.967 -2.490 ML 145 143 6 148 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 25 34 u a - - MP 150 149 6 154 4 2 2 24 43 -6.953 -7.160 -0.053 -5.574 -2.627 -2.613 -2.723 0.692 -2.304 -3.496 1.644 -2.793 1.153 0.870 -3.260 -0.839 2.119 -2.910 -0.201 -1.811 ML 151 149 6 154 4 1 1 25 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 4 1 1 24 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 153 149 6 154 4 0 0 23 42 -4.568 -4.250 -2.265 -0.520 IL 154 154 5 154 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 155 155 6 155 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 26 - A - - - ML 156 155 6 158 3 1 1 21 40 -7.969 -0.021 -6.623 1.721 -2.381 -2.012 -1.924 D 157 155 6 158 3 0 0 20 39 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 27 - U - - - ML 159 158 3 161 3 1 1 20 39 -7.969 -0.021 -6.623 -1.494 -1.489 -2.228 1.621 D 160 158 3 161 3 0 0 19 38 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 28 - A - - - ML 162 161 3 164 3 1 1 19 37 -7.969 -0.021 -6.623 1.721 -2.381 -2.012 -1.924 D 163 161 3 164 3 0 0 18 37 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 29 - U - - - ML 165 164 3 167 3 1 1 18 36 -7.969 -0.021 -6.623 -1.494 -1.489 -2.228 1.621 D 166 164 3 167 3 0 0 17 36 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 30 - U - - - ML 168 167 3 170 3 1 1 16 35 -7.969 -0.021 -6.623 -1.494 -1.489 -2.228 1.621 D 169 167 3 170 3 0 0 16 34 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 31 - G - - - ML 171 170 3 173 3 1 1 15 33 -7.969 -0.021 -6.623 -1.591 -2.812 1.726 -2.199 D 172 170 3 173 3 0 0 15 33 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 32 - A - - - ML 174 173 3 176 3 1 1 13 31 -7.969 -0.021 -6.623 1.721 -2.381 -2.012 -1.924 D 175 173 3 176 3 0 0 13 32 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 33 - A - - - ML 177 176 3 179 2 1 1 1 1 * 0.000 1.721 -2.381 -2.012 -1.924 D 178 176 3 179 2 0 0 0 0 * 0.000 IL 179 179 3 179 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 36 ] - - - - - - E 180 179 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-8229 ACC RF03260 DESC mir-8229 microRNA precursor family LENG 59 MAXL 145 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 14:45:44 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03260/CM NSEQ 2 EFFN 1.957031 CKSUM 3210952933 STATS LOCAL MSV -8.3887 0.73055 STATS LOCAL VITERBI -9.1883 0.73055 STATS LOCAL FORWARD -3.0670 0.73055 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.46863 1.51936 1.21476 1.36993 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.98469 0.29549 2.74364 1.95941 1 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 1.35435 1.51573 1.70397 1.07799 2 u - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.75856 1.75142 2.48601 0.38588 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 1.13375 1.97030 1.45831 1.18373 4 a - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.46025 3.03699 0.20360 2.97944 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.76052 1.48526 2.52715 0.46138 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.99862 0.29358 2.74984 1.96171 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.75932 1.75144 2.48632 0.38577 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.73923 1.75093 2.47826 0.38879 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.98573 0.29535 2.74410 1.95958 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.43215 2.54151 1.66885 2.48080 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.55853 0.84091 2.32585 0.93251 12 c - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.45909 3.03573 0.20391 2.97766 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 0.43171 2.54277 1.66899 2.48272 14 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 1.76462 2.14816 0.54615 2.01836 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.45934 3.03601 0.20384 2.97805 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.43696 0.87853 2.17065 0.95951 17 c - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.42964 2.42474 2.93886 0.26071 18 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 1.98337 2.18372 0.46773 2.09270 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.43138 2.54370 1.66909 2.48413 20 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.79928 1.92774 1.44063 1.78324 21 a - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 3.00028 0.29336 2.75057 1.96198 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.46061 3.03738 0.20351 2.98000 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.56071 0.84053 2.32670 0.93229 24 c - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.02188 1.50619 1.22350 1.04514 25 u - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.19165 3.04489 2.78828 2.72916 26 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.42964 2.42474 2.93886 0.26071 27 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 0.19165 3.04489 2.78828 2.72916 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.42964 2.42474 2.93886 0.26071 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.42964 2.42474 2.93886 0.26071 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.49750 3.34571 0.18804 2.92074 31 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 0.19165 3.04489 2.78828 2.72916 32 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.19165 3.04489 2.78828 2.72916 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.83498 1.97893 1.32936 1.81245 34 a - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 1.85021 2.48749 0.41223 2.32787 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 3.18765 0.23961 2.86792 2.16300 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.23581 2.91589 0.25439 2.75594 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 1.30013 1.65698 1.73152 1.02228 38 u - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.70530 1.94035 2.35491 0.36443 39 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.31351 0.76650 1.35757 1.71945 40 c - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 1.09617 2.33521 0.77959 2.20304 41 g - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 3.18666 0.23972 2.86750 2.16280 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 1.30140 1.65742 1.95404 0.92756 43 u - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.71100 1.94085 2.35685 0.36351 44 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 3.18821 0.23955 2.86815 2.16310 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 1.85037 2.48770 0.41212 2.32814 46 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.71239 1.94097 2.35732 0.36329 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.23725 2.91770 0.25388 2.75822 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 0.43800 2.66767 1.58834 2.51332 49 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.49750 3.34571 0.18804 2.92074 50 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 0.43837 2.66640 1.58829 2.51166 51 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.23651 2.91678 0.25414 2.75705 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.00151 2.70128 0.33357 2.50855 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 3.19087 0.23925 2.86927 2.16362 54 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.09698 1.68091 1.78162 0.64893 55 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 0.43794 2.66791 1.58835 2.51364 56 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 0.90885 1.87657 1.33342 1.71299 57 a - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 2.23957 2.92062 0.25306 2.76190 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 2.49750 3.34571 0.18804 2.92074 59 G - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //