INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-9460 ACC RF03254 DESC mir-9460 microRNA precursor family STATES 208 NODES 51 CLEN 68 W 84 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 6 00:44:04 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03254/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 5 EFFN 1.401367 CKSUM 2156764253 NULL 0.000 0.000 0.000 0.000 GA 85.00 TC 85.20 NC 78.10 EFP7GF -9.0381 0.71906 ECMLC 0.67983 -5.22504 3.39405 1600000 420649 0.002853 ECMGC 0.44214 -15.57758 -2.99804 1600000 104128 0.003841 ECMLI 0.67527 -3.20383 4.63765 1600000 239233 0.005016 ECMGI 0.47409 -10.71906 0.25378 1600000 72663 0.005505 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 84 104 -6.713 -6.921 -0.063 -5.335 IL 1 1 2 1 4 1 23 88 108 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 22 87 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 22 84 104 -7.748 -0.024 -6.402 -1.098 -1.165 -1.808 1.486 D 4 2 3 5 3 0 17 83 103 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 21 86 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - C - - - ML 6 5 3 8 3 1 21 83 103 -7.748 -0.024 -6.402 -1.232 1.452 -2.033 -0.752 D 7 5 3 8 3 0 17 82 102 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 21 85 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 20 82 102 -7.748 -0.024 -6.402 -1.098 -1.165 -1.808 1.486 D 10 8 3 11 3 0 16 81 101 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 20 84 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - G - - - ML 12 11 3 14 3 1 19 81 101 -7.748 -0.024 -6.402 -1.120 -2.261 1.590 -1.645 D 13 11 3 14 3 0 15 80 100 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 19 83 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - U - - - ML 15 14 3 17 3 1 18 80 100 -7.748 -0.024 -6.402 -0.645 -0.274 -1.374 1.103 D 16 14 3 17 3 0 14 79 99 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 18 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - u - - - ML 18 17 3 20 3 1 17 79 99 -7.748 -0.024 -6.402 -0.394 -0.764 -0.526 0.968 D 19 17 3 20 3 0 14 78 97 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 17 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 21 20 3 23 3 1 16 78 98 -7.748 -0.024 -6.402 -1.120 -2.261 1.590 -1.645 D 22 20 3 23 3 0 13 77 96 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 16 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - U - - - ML 24 23 3 26 3 1 15 77 97 -8.154 -0.146 -3.432 -1.098 -1.165 -1.808 1.486 D 25 23 3 26 3 0 12 76 95 -5.620 -0.734 -1.403 IL 26 26 3 26 3 1 16 78 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 68 - A - - MR 27 26 3 29 3 1 16 76 96 -8.031 -0.023 -6.349 1.517 -1.687 -1.387 -1.170 D 28 26 3 29 3 0 10 75 94 -7.059 -0.778 -1.289 IR 29 29 3 29 3 1 15 77 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 67 - U - - MR 30 29 3 32 3 1 15 75 95 -8.154 -0.021 -6.471 -1.098 -1.165 -1.808 1.486 D 31 29 3 32 3 0 9 73 93 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 14 76 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 66 - A - - MR 33 32 3 35 3 1 14 74 94 -8.154 -0.021 -6.471 1.607 -1.941 -1.616 -1.444 D 34 32 3 35 3 0 8 72 92 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 13 75 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 65 - G - - MR 36 35 3 38 3 1 14 73 93 -8.154 -0.021 -6.471 -1.120 -2.261 1.590 -1.645 D 37 35 3 38 3 0 7 71 91 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 12 74 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 64 - U - - MR 39 38 3 41 3 1 13 72 92 -8.154 -0.021 -6.471 -1.098 -1.165 -1.808 1.486 D 40 38 3 41 3 0 6 70 90 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 11 73 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 63 - U - - MR 42 41 3 44 5 1 13 71 91 -6.907 -0.045 -6.722 -6.934 -7.826 -1.098 -1.165 -1.808 1.486 D 43 41 3 44 5 0 5 70 89 -5.352 -0.707 -2.978 -4.409 -2.404 IR 44 44 3 44 5 1 9 71 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 9 62 u a - - MP 45 44 3 49 6 2 13 70 90 -9.022 -8.962 -0.022 -7.738 -8.018 -8.413 -2.601 -2.587 -2.710 0.750 -2.324 -3.502 1.650 -2.801 -0.616 0.986 -3.261 -0.805 2.501 -2.876 -0.207 -1.782 ML 46 44 3 49 6 1 7 68 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 3 49 6 1 7 68 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 3 49 6 0 2 66 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 9 70 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 9 69 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 10 61 u g - - MP 51 50 6 55 6 2 12 68 88 -9.022 -8.962 -0.022 -7.738 -8.018 -8.413 -3.666 -3.567 -3.464 0.054 -2.364 -3.962 1.909 -3.093 -3.501 0.325 -3.838 -1.581 1.125 -3.790 2.675 -2.395 ML 52 50 6 55 6 1 6 66 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 6 66 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 2 64 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 8 68 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 8 67 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 11 60 A U - - MP 57 56 6 61 6 2 10 66 86 -9.022 -8.962 -0.022 -7.738 -8.018 -8.413 -3.459 -2.581 -3.498 3.060 -3.674 -4.713 0.606 -3.559 -3.407 1.440 -3.938 -0.117 0.186 -3.954 -1.337 -2.355 ML 58 56 6 61 6 1 6 65 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 5 64 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 2 62 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 7 66 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 7 65 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 12 59 u g - - MP 63 62 6 67 6 2 9 64 84 -9.022 -8.962 -0.022 -7.738 -8.018 -8.413 -3.666 -3.567 -3.464 0.054 -2.364 -3.962 1.909 -3.093 -3.501 0.325 -3.838 -1.581 1.125 -3.790 2.675 -2.395 ML 64 62 6 67 6 1 5 63 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 4 63 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 1 61 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 6 64 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 6 63 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 13 58 G C - - MP 69 68 6 73 4 2 7 62 82 -6.713 -6.921 -0.063 -5.335 -4.324 -2.897 -4.394 0.470 -4.643 -4.523 -0.109 -4.599 -4.041 3.519 -4.410 -0.585 -0.507 -4.190 -2.126 -3.277 ML 70 68 6 73 4 1 4 62 82 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 4 1 2 62 82 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 72 68 6 73 4 0 1 61 81 -4.568 -4.250 -2.265 -0.520 IL 73 73 5 73 4 1 6 63 83 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 74 74 6 74 3 1 5 63 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 14 - C - - - ML 75 74 6 77 3 1 5 59 79 -8.154 -0.021 -6.471 -1.232 1.452 -2.033 -0.752 D 76 74 6 77 3 0 1 58 78 -5.620 -0.734 -1.403 IL 77 77 3 77 3 1 4 60 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 57 - U - - MR 78 77 3 80 5 1 5 58 78 -6.907 -0.045 -6.722 -6.934 -7.826 -1.098 -1.165 -1.808 1.486 D 79 77 3 80 5 0 0 57 77 -5.352 -0.707 -2.978 -4.409 -2.404 IR 80 80 3 80 5 1 3 59 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 15 56 C G - - MP 81 80 3 85 6 2 5 57 77 -9.022 -8.962 -0.022 -7.738 -8.018 -8.413 -4.124 -3.987 -3.882 -0.263 -2.702 -4.349 3.394 -3.468 -3.921 0.049 -4.224 -1.930 0.850 -4.219 -0.402 -2.776 ML 82 80 3 85 6 1 2 57 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 3 85 6 1 2 56 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 3 85 6 0 0 55 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 2 57 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 2 57 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 16 55 C G - - MP 87 86 6 91 4 2 3 55 75 -6.713 -6.921 -0.063 -5.335 -4.124 -3.987 -3.882 -0.263 -2.702 -4.349 3.394 -3.468 -3.921 0.049 -4.224 -1.930 0.850 -4.219 -0.402 -2.776 ML 88 86 6 91 4 1 1 56 76 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 4 1 1 55 75 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 90 86 6 91 4 0 0 54 74 -4.568 -4.250 -2.265 -0.520 IL 91 91 5 91 4 1 2 57 77 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 92 92 6 92 3 1 1 56 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 17 - C - - - ML 93 92 6 95 3 1 2 53 72 -8.154 -0.021 -6.471 -1.232 1.452 -2.033 -0.752 D 94 92 6 95 3 0 0 52 71 -5.620 -0.734 -1.403 IL 95 95 3 95 3 1 1 54 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 54 - U - - MR 96 95 3 98 5 1 1 52 71 -6.907 -0.045 -6.722 -6.934 -7.826 -1.098 -1.165 -1.808 1.486 D 97 95 3 98 5 0 0 51 70 -5.352 -0.707 -2.978 -4.409 -2.404 IR 98 98 3 98 5 1 1 52 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 18 53 A U - - MP 99 98 3 103 6 2 2 51 70 -9.022 -8.962 -0.022 -7.738 -8.018 -8.413 -3.459 -2.581 -3.498 3.060 -3.674 -4.713 0.606 -3.559 -3.407 1.440 -3.938 -0.117 0.186 -3.954 -1.337 -2.355 ML 100 98 3 103 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 3 103 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 3 103 6 0 0 47 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 51 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 50 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 19 52 C G - - MP 105 104 6 109 6 2 2 49 68 -9.022 -8.962 -0.022 -7.738 -8.018 -8.413 -4.124 -3.987 -3.882 -0.263 -2.702 -4.349 3.394 -3.468 -3.921 0.049 -4.224 -1.930 0.850 -4.219 -0.402 -2.776 ML 106 104 6 109 6 1 1 48 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 46 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 48 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 20 51 G C - - MP 111 110 6 115 4 2 2 47 66 -6.713 -6.921 -0.063 -5.335 -4.324 -2.897 -4.394 0.470 -4.643 -4.523 -0.109 -4.599 -4.041 3.519 -4.410 -0.585 -0.507 -4.190 -2.126 -3.277 ML 112 110 6 115 4 1 1 47 67 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 4 1 1 47 66 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 114 110 6 115 4 0 0 46 65 -4.568 -4.250 -2.265 -0.520 IL 115 115 5 115 4 1 1 49 68 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 116 116 6 116 3 1 1 48 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 21 - A - - - ML 117 116 6 119 3 1 1 44 63 -8.154 -0.021 -6.471 1.607 -1.941 -1.616 -1.444 D 118 116 6 119 3 0 0 43 62 -5.620 -0.734 -1.403 IL 119 119 3 119 3 1 1 45 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 50 - G - - MR 120 119 3 122 3 1 1 43 62 -8.154 -0.021 -6.471 -1.120 -2.261 1.590 -1.645 D 121 119 3 122 3 0 0 42 61 -6.390 -1.568 -0.620 IR 122 122 3 122 3 1 1 44 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 49 - C - - MR 123 122 3 125 5 1 1 42 61 -6.907 -0.045 -6.722 -6.934 -7.826 -1.232 1.452 -2.033 -0.752 D 124 122 3 125 5 0 0 41 60 -5.352 -0.707 -2.978 -4.409 -2.404 IR 125 125 3 125 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 22 48 U A - - MP 126 125 3 130 6 2 2 41 60 -9.022 -8.962 -0.022 -7.738 -8.018 -8.413 -3.769 -3.575 -3.651 0.097 -2.689 -4.252 1.627 -3.353 -3.661 0.426 -4.054 -1.486 3.079 -3.933 -0.376 -2.523 ML 127 125 3 130 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 3 130 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 3 130 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 23 47 A U - - MP 132 131 6 136 6 2 2 39 58 -9.022 -8.962 -0.022 -7.738 -8.018 -8.413 -3.459 -2.581 -3.498 3.060 -3.674 -4.713 0.606 -3.559 -3.407 1.440 -3.938 -0.117 0.186 -3.954 -1.337 -2.355 ML 133 131 6 136 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 24 46 A U - - MP 138 137 6 142 6 2 2 37 56 -9.022 -8.962 -0.022 -7.738 -8.018 -8.413 -3.459 -2.581 -3.498 3.060 -3.674 -4.713 0.606 -3.559 -3.407 1.440 -3.938 -0.117 0.186 -3.954 -1.337 -2.355 ML 139 137 6 142 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 25 45 C G - - MP 144 143 6 148 6 2 2 35 54 -9.022 -8.962 -0.022 -7.738 -8.018 -8.413 -4.124 -3.987 -3.882 -0.263 -2.702 -4.349 3.394 -3.468 -3.921 0.049 -4.224 -1.930 0.850 -4.219 -0.402 -2.776 ML 145 143 6 148 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 26 44 G C - - MP 150 149 6 154 4 2 2 33 52 -6.650 -7.896 -0.094 -4.349 -4.324 -2.897 -4.394 0.470 -4.643 -4.523 -0.109 -4.599 -4.041 3.519 -4.410 -0.585 -0.507 -4.190 -2.126 -3.277 ML 151 149 6 154 4 1 1 33 52 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 4 1 1 32 51 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 153 149 6 154 4 0 0 30 49 -12.737 -14.007 -2.036 -0.404 IL 154 154 5 154 4 1 1 33 52 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 155 155 6 155 3 1 1 33 52 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 43 - c - - MR 156 155 6 158 5 1 1 31 50 -6.907 -0.045 -6.722 -6.934 -7.826 -0.702 0.958 -1.488 0.119 D 157 155 6 158 5 0 0 30 49 -5.352 -0.707 -2.978 -4.409 -2.404 IR 158 158 3 158 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 27 42 U A - - MP 159 158 3 163 6 2 2 30 49 -9.022 -8.962 -0.022 -7.738 -8.018 -8.413 -3.769 -3.575 -3.651 0.097 -2.689 -4.252 1.627 -3.353 -3.661 0.426 -4.054 -1.486 3.079 -3.933 -0.376 -2.523 ML 160 158 3 163 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 3 163 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 3 163 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 28 41 a u - - MP 165 164 6 169 6 2 2 28 47 -9.022 -8.962 -0.022 -7.738 -8.018 -8.413 -3.166 -2.310 -3.259 2.685 -3.636 -4.437 0.581 -3.437 -3.179 1.755 -3.717 0.956 0.293 -3.609 -1.322 -2.141 ML 166 164 6 169 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 168 164 6 169 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 169 169 5 169 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 170 170 6 170 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 29 40 G C - - MP 171 170 6 175 6 2 2 26 45 -9.022 -8.962 -0.022 -7.738 -8.018 -8.413 -4.324 -2.897 -4.394 0.470 -4.643 -4.523 -0.109 -4.599 -4.041 3.519 -4.410 -0.585 -0.507 -4.190 -2.126 -3.277 ML 172 170 6 175 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 173 170 6 175 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 174 170 6 175 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 175 175 5 175 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 176 176 6 176 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 30 39 G C - - MP 177 176 6 181 4 2 2 24 43 -6.713 -6.921 -0.063 -5.335 -4.324 -2.897 -4.394 0.470 -4.643 -4.523 -0.109 -4.599 -4.041 3.519 -4.410 -0.585 -0.507 -4.190 -2.126 -3.277 ML 178 176 6 181 4 1 1 25 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 179 176 6 181 4 1 1 24 44 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 180 176 6 181 4 0 0 23 43 -4.568 -4.250 -2.265 -0.520 IL 181 181 5 181 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 182 182 6 182 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 31 - C - - - ML 183 182 6 185 3 1 1 21 40 -7.748 -0.024 -6.402 -1.232 1.452 -2.033 -0.752 D 184 182 6 185 3 0 0 20 39 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 32 - A - - - ML 186 185 3 188 3 1 1 20 39 -7.748 -0.024 -6.402 1.607 -1.941 -1.616 -1.444 D 187 185 3 188 3 0 0 19 38 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 33 - G - - - ML 189 188 3 191 3 1 1 19 38 -7.748 -0.024 -6.402 -1.120 -2.261 1.590 -1.645 D 190 188 3 191 3 0 0 18 37 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 34 - A - - - ML 192 191 3 194 3 1 1 18 36 -7.748 -0.024 -6.402 1.607 -1.941 -1.616 -1.444 D 193 191 3 194 3 0 0 17 36 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 35 - A - - - ML 195 194 3 197 3 1 1 16 35 -7.748 -0.024 -6.402 1.607 -1.941 -1.616 -1.444 D 196 194 3 197 3 0 0 16 34 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 36 - A - - - ML 198 197 3 200 3 1 1 15 33 -7.748 -0.024 -6.402 1.607 -1.941 -1.616 -1.444 D 199 197 3 200 3 0 0 15 33 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 37 - A - - - ML 201 200 3 203 3 1 1 13 32 -7.748 -0.024 -6.402 1.607 -1.941 -1.616 -1.444 D 202 200 3 203 3 0 0 13 32 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 38 - A - - - ML 204 203 3 206 2 1 1 1 1 * 0.000 1.607 -1.941 -1.616 -1.444 D 205 203 3 206 2 0 0 0 0 * 0.000 IL 206 206 3 206 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 50 ] - - - - - - E 207 206 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-9460 ACC RF03254 DESC mir-9460 microRNA precursor family LENG 68 MAXL 156 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 6 00:44:04 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03254/CM NSEQ 5 EFFN 1.987305 CKSUM 2156764253 STATS LOCAL MSV -8.4659 0.71906 STATS LOCAL VITERBI -8.9273 0.71906 STATS LOCAL FORWARD -3.4139 0.71906 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.42279 1.43886 1.35650 1.33105 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 0.00000 * 1 2.44430 2.43684 2.95426 0.25662 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 2 2.63024 0.25069 3.20238 2.21628 2 C - - : 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 3 2.44430 2.43684 2.95426 0.25662 3 U - - : 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 4 2.51436 3.36517 0.18431 2.94028 4 G - - : 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 5 1.98930 1.60131 2.50570 0.54480 5 U - - : 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 6 1.77498 2.02244 1.78889 0.63292 6 U - - : 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 7 2.51436 3.36517 0.18431 2.94028 7 G - - : 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 8 2.44430 2.43684 2.95426 0.25662 8 U - - : 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 9 2.08068 1.55162 1.61803 0.76580 9 u - - < 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 10 2.77475 1.49247 2.54374 0.45532 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 11 0.42339 2.56162 1.68190 2.50131 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 12 2.77652 1.49241 2.54450 0.45507 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 13 2.47104 3.05455 0.20038 2.99696 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 14 2.63024 0.25069 3.20238 2.21628 14 C - - - 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 15 3.01328 0.28900 2.76722 1.97312 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 16 3.01673 0.28854 2.76876 1.97369 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 17 2.63024 0.25069 3.20238 2.21628 17 C - - - 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 18 0.42353 2.56120 1.68185 2.50068 18 A - - < 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 19 3.01738 0.28845 2.76905 1.97380 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 20 2.47203 3.05562 0.20012 2.99849 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 21 0.18830 3.06086 2.80265 2.74670 21 A - - - 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 22 2.77494 1.76306 2.50440 0.37921 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 23 0.42333 2.56180 1.68192 2.50158 23 A - - < 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 24 0.42324 2.56206 1.68195 2.50197 24 A - - < 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 25 3.01746 0.28844 2.76908 1.97381 25 C - - < 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 26 2.47143 3.05497 0.20028 2.99756 26 G - - < 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 27 2.75674 1.76255 2.49704 0.38190 27 U - - < 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 28 0.70340 2.48869 1.12289 2.33567 28 a - - < 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 29 2.46731 3.05049 0.20135 2.99122 29 G - - < 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 30 2.46873 3.05204 0.20098 2.99340 30 G - - < 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 31 2.63024 0.25069 3.20238 2.21628 31 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 32 0.18830 3.06086 2.80265 2.74670 32 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 33 2.51436 3.36517 0.18431 2.94028 33 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 34 0.18830 3.06086 2.80265 2.74670 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 35 0.18830 3.06086 2.80265 2.74670 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 36 0.18830 3.06086 2.80265 2.74670 36 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 37 0.18830 3.06086 2.80265 2.74670 37 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 38 0.18830 3.06086 2.80265 2.74670 38 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 39 3.20526 0.23596 2.88569 2.17313 39 C - - > 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 40 3.20644 0.23583 2.88618 2.17336 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 41 2.55957 1.62956 2.29661 0.46833 41 U - - > 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 42 0.43029 2.68664 1.60001 2.52977 42 A - - > 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 43 2.05645 0.61131 2.62281 1.35924 43 C - - - 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 44 3.20923 0.23553 2.88735 2.17390 44 C - - > 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 45 2.25020 2.93712 0.24935 2.77590 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 46 2.73404 1.95595 2.37673 0.35559 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 47 2.73586 1.95612 2.37735 0.35530 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 48 0.42949 2.68953 1.60014 2.53352 48 A - - > 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 49 2.63024 0.25069 3.20238 2.21628 49 C - - - 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 50 2.51436 3.36517 0.18431 2.94028 50 G - - - 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 51 3.21415 0.23499 2.88942 2.17484 51 C - - > 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 52 2.25203 2.93944 0.24871 2.77882 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 53 2.73857 1.95636 2.37828 0.35488 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 54 2.44430 2.43684 2.95426 0.25662 54 U - - - 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 55 2.25191 2.93929 0.24875 2.77863 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 56 2.25315 2.94086 0.24832 2.78061 56 G - - > 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 57 2.44430 2.43684 2.95426 0.25662 57 U - - - 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 58 3.20833 0.23562 2.88697 2.17372 58 C - - > 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 59 2.01184 2.71957 0.32816 2.52435 59 G - - > 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 60 2.73327 1.95589 2.37647 0.35571 60 U - - > 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 61 2.01289 2.72099 0.32765 2.52608 61 G - - > 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 62 0.76589 2.04450 1.37546 1.87788 62 a - - > 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 63 2.44430 2.43684 2.95426 0.25662 63 U - - : 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 64 2.44430 2.43684 2.95426 0.25662 64 U - - : 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 65 2.51436 3.36517 0.18431 2.94028 65 G - - : 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 66 0.18830 3.06086 2.80265 2.74670 66 A - - : 1.38629 1.38629 1.38629 1.38629 0.04506 3.81526 3.81526 1.46634 0.26236 1.09861 0.40547 67 2.44430 2.43684 2.95426 0.25662 67 U - - : 1.38629 1.38629 1.38629 1.38629 0.16215 3.81526 2.05841 1.46634 0.26236 1.09861 0.40547 68 0.24184 2.83657 2.60093 2.50123 68 A - - : 1.38629 1.38629 1.38629 1.38629 0.02558 3.67869 * 1.46634 0.26236 0.00000 * //