INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-1789 ACC RF03241 DESC mir-1789 microRNA precursor family STATES 193 NODES 43 CLEN 63 W 79 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 8 12:24:46 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03241/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.503906 CKSUM 2883505326 NULL 0.000 0.000 0.000 0.000 GA 88.00 TC 88.10 NC 87.80 EFP7GF -6.1772 0.72529 ECMLC 0.66290 -5.31011 3.50479 1600000 413923 0.002899 ECMGC 0.42443 -16.17216 -2.38267 1600000 139273 0.002872 ECMLI 0.66107 -3.82261 4.66932 1600000 329003 0.003647 ECMGI 0.46857 -11.05460 0.69298 1600000 98324 0.004068 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 79 99 -9.039 -8.979 -0.022 -7.755 -8.035 -8.430 IL 1 1 2 1 6 1 14 81 101 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 14 81 101 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 63 C G - - MP 3 2 3 7 6 2 15 79 99 -9.039 -8.979 -0.022 -7.755 -8.035 -8.430 -4.209 -4.081 -3.954 -0.348 -2.752 -4.410 3.430 -3.527 -3.994 -0.052 -4.289 -2.025 0.794 -4.299 -0.452 -2.846 ML 4 2 3 7 6 1 11 78 98 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 10 78 98 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 7 76 96 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 13 79 99 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 13 79 99 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 62 C G - - MP 9 8 6 13 6 2 14 77 97 -9.039 -8.979 -0.022 -7.755 -8.035 -8.430 -4.209 -4.081 -3.954 -0.348 -2.752 -4.410 3.430 -3.527 -3.994 -0.052 -4.289 -2.025 0.794 -4.299 -0.452 -2.846 ML 10 8 6 13 6 1 10 76 97 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 9 76 96 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 6 74 95 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 12 77 97 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 12 77 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 61 A U - - MP 15 14 6 19 4 2 12 75 95 -6.762 -6.969 -0.061 -5.383 -3.522 -2.626 -3.558 3.122 -3.764 -4.806 0.519 -3.615 -3.463 1.371 -3.997 -0.150 0.100 -4.037 -1.424 -2.410 ML 16 14 6 19 4 1 9 75 96 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 4 1 7 75 95 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 18 14 6 19 4 0 6 74 94 -4.568 -4.250 -2.265 -0.520 IL 19 19 5 19 4 1 11 77 97 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 20 20 6 20 3 1 10 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - u - - - ML 21 20 6 23 3 1 10 73 93 -7.793 -0.023 -6.447 -0.572 0.395 -1.332 0.692 D 22 20 6 23 3 0 5 72 91 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 10 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - G - - - ML 24 23 3 26 3 1 9 72 92 -8.195 -0.021 -6.513 -1.214 -2.372 1.623 -1.757 D 25 23 3 26 3 0 5 71 90 -5.620 -0.734 -1.403 IL 26 26 3 26 3 1 8 73 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 60 - A - - MR 27 26 3 29 3 1 8 71 91 -8.195 -0.021 -6.513 1.633 -2.029 -1.695 -1.539 D 28 26 3 29 3 0 3 69 89 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 7 72 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 59 - A - - MR 30 29 3 32 5 1 8 70 90 -6.945 -0.043 -6.760 -6.972 -7.864 1.633 -2.029 -1.695 -1.539 D 31 29 3 32 5 0 2 69 88 -5.352 -0.707 -2.978 -4.409 -2.404 IR 32 32 3 32 5 1 6 70 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 58 C G - - MP 33 32 3 37 6 2 7 69 89 -9.039 -8.979 -0.022 -7.755 -8.035 -8.430 -4.209 -4.081 -3.954 -0.348 -2.752 -4.410 3.430 -3.527 -3.994 -0.052 -4.289 -2.025 0.794 -4.299 -0.452 -2.846 ML 34 32 3 37 6 1 4 68 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 3 37 6 1 2 68 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 3 37 6 0 0 66 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 5 69 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 5 68 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 57 A U - - MP 39 38 6 43 4 2 5 67 87 -6.762 -6.969 -0.061 -5.383 -3.522 -2.626 -3.558 3.122 -3.764 -4.806 0.519 -3.615 -3.463 1.371 -3.997 -0.150 0.100 -4.037 -1.424 -2.410 ML 40 38 6 43 4 1 3 67 87 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 4 1 1 67 87 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 42 38 6 43 4 0 0 66 86 -4.568 -4.250 -2.265 -0.520 IL 43 43 5 43 4 1 4 68 88 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 44 44 6 44 3 1 4 68 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 8 - C - - - ML 45 44 6 47 3 1 4 64 84 -8.195 -0.021 -6.513 -1.334 1.493 -2.140 -0.832 D 46 44 6 47 3 0 0 63 83 -5.620 -0.734 -1.403 IL 47 47 3 47 3 1 3 65 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 56 - A - - MR 48 47 3 50 5 1 4 63 83 -6.945 -0.043 -6.760 -6.972 -7.864 1.633 -2.029 -1.695 -1.539 D 49 47 3 50 5 0 0 62 82 -5.352 -0.707 -2.978 -4.409 -2.404 IR 50 50 3 50 5 1 2 64 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 9 55 C G - - MP 51 50 3 55 6 2 5 62 82 -9.039 -8.979 -0.022 -7.755 -8.035 -8.430 -4.209 -4.081 -3.954 -0.348 -2.752 -4.410 3.430 -3.527 -3.994 -0.052 -4.289 -2.025 0.794 -4.299 -0.452 -2.846 ML 52 50 3 55 6 1 1 61 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 3 55 6 1 1 61 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 3 55 6 0 0 58 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 62 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 1 62 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 10 54 C G - - MP 57 56 6 61 6 2 5 60 80 -9.039 -8.979 -0.022 -7.755 -8.035 -8.430 -4.209 -4.081 -3.954 -0.348 -2.752 -4.410 3.430 -3.527 -3.994 -0.052 -4.289 -2.025 0.794 -4.299 -0.452 -2.846 ML 58 56 6 61 6 1 1 59 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 59 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 56 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 60 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 60 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 11 53 a u - - MP 63 62 6 67 6 2 4 58 78 -9.039 -8.979 -0.022 -7.755 -8.035 -8.430 -2.792 1.161 -2.929 2.147 -3.184 -3.892 0.749 -3.167 -2.881 1.814 -3.392 0.102 0.488 -3.159 -1.035 -1.914 ML 64 62 6 67 6 1 1 57 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 57 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 54 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 58 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 58 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 12 52 C G - - MP 69 68 6 73 6 2 4 56 76 -9.039 -8.979 -0.022 -7.755 -8.035 -8.430 -4.209 -4.081 -3.954 -0.348 -2.752 -4.410 3.430 -3.527 -3.994 -0.052 -4.289 -2.025 0.794 -4.299 -0.452 -2.846 ML 70 68 6 73 6 1 1 55 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 55 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 53 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 56 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 56 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 51 A U - - MP 75 74 6 79 6 2 4 54 74 -9.039 -8.979 -0.022 -7.755 -8.035 -8.430 -3.522 -2.626 -3.558 3.122 -3.764 -4.806 0.519 -3.615 -3.463 1.371 -3.997 -0.150 0.100 -4.037 -1.424 -2.410 ML 76 74 6 79 6 1 1 53 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 53 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 51 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 54 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 54 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 50 A U - - MP 81 80 6 85 6 2 3 52 72 -9.039 -8.979 -0.022 -7.755 -8.035 -8.430 -3.522 -2.626 -3.558 3.122 -3.764 -4.806 0.519 -3.615 -3.463 1.371 -3.997 -0.150 0.100 -4.037 -1.424 -2.410 ML 82 80 6 85 6 1 1 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 51 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 52 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 52 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 49 G C - - MP 87 86 6 91 4 2 2 50 70 -6.762 -6.969 -0.061 -5.383 -4.410 -2.937 -4.485 0.416 -4.765 -4.560 -0.210 -4.699 -4.103 3.547 -4.465 -0.627 -0.606 -4.248 -2.231 -3.367 ML 88 86 6 91 4 1 1 51 71 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 4 1 1 50 70 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 90 86 6 91 4 0 0 49 69 -4.568 -4.250 -2.265 -0.520 IL 91 91 5 91 4 1 1 52 72 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 92 92 6 92 3 1 1 51 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 16 - C - - - ML 93 92 6 95 3 1 1 48 67 -8.195 -0.021 -6.513 -1.334 1.493 -2.140 -0.832 D 94 92 6 95 3 0 0 47 66 -5.620 -0.734 -1.403 IL 95 95 3 95 3 1 1 49 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 48 - A - - MR 96 95 3 98 5 1 1 47 66 -6.945 -0.043 -6.760 -6.972 -7.864 1.633 -2.029 -1.695 -1.539 D 97 95 3 98 5 0 0 46 65 -5.352 -0.707 -2.978 -4.409 -2.404 IR 98 98 3 98 5 1 1 47 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 17 47 A U - - MP 99 98 3 103 6 2 2 46 65 -9.039 -8.979 -0.022 -7.755 -8.035 -8.430 -3.522 -2.626 -3.558 3.122 -3.764 -4.806 0.519 -3.615 -3.463 1.371 -3.997 -0.150 0.100 -4.037 -1.424 -2.410 ML 100 98 3 103 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 3 103 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 3 103 6 0 0 42 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 45 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 18 46 C G - - MP 105 104 6 109 6 2 2 44 63 -9.039 -8.979 -0.022 -7.755 -8.035 -8.430 -4.209 -4.081 -3.954 -0.348 -2.752 -4.410 3.430 -3.527 -3.994 -0.052 -4.289 -2.025 0.794 -4.299 -0.452 -2.846 ML 106 104 6 109 6 1 1 43 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 41 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 43 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 19 45 A U - - MP 111 110 6 115 4 2 2 42 61 -6.762 -6.969 -0.061 -5.383 -3.522 -2.626 -3.558 3.122 -3.764 -4.806 0.519 -3.615 -3.463 1.371 -3.997 -0.150 0.100 -4.037 -1.424 -2.410 ML 112 110 6 115 4 1 1 42 62 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 4 1 1 42 61 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 114 110 6 115 4 0 0 41 60 -4.568 -4.250 -2.265 -0.520 IL 115 115 5 115 4 1 1 44 63 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 116 116 6 116 3 1 1 43 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 20 - A - - - ML 117 116 6 119 3 1 1 39 58 -8.195 -0.021 -6.513 1.633 -2.029 -1.695 -1.539 D 118 116 6 119 3 0 0 38 57 -5.620 -0.734 -1.403 IL 119 119 3 119 3 1 1 40 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 44 - G - - MR 120 119 3 122 5 1 1 38 57 -6.945 -0.043 -6.760 -6.972 -7.864 -1.214 -2.372 1.623 -1.757 D 121 119 3 122 5 0 0 37 56 -5.352 -0.707 -2.978 -4.409 -2.404 IR 122 122 3 122 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 21 43 C G - - MP 123 122 3 127 6 2 2 37 56 -9.039 -8.979 -0.022 -7.755 -8.035 -8.430 -4.209 -4.081 -3.954 -0.348 -2.752 -4.410 3.430 -3.527 -3.994 -0.052 -4.289 -2.025 0.794 -4.299 -0.452 -2.846 ML 124 122 3 127 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 3 127 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 3 127 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 22 42 C G - - MP 129 128 6 133 6 2 2 35 54 -9.039 -8.979 -0.022 -7.755 -8.035 -8.430 -4.209 -4.081 -3.954 -0.348 -2.752 -4.410 3.430 -3.527 -3.994 -0.052 -4.289 -2.025 0.794 -4.299 -0.452 -2.846 ML 130 128 6 133 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 23 41 a u - - MP 135 134 6 139 6 2 2 33 52 -9.039 -8.979 -0.022 -7.755 -8.035 -8.430 -2.610 -2.326 -2.730 2.086 -2.597 -3.634 1.316 0.909 -2.734 1.315 -3.262 -0.285 0.951 -2.949 -0.497 -1.782 ML 136 134 6 139 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 24 40 A U - - MP 141 140 6 145 6 2 2 31 50 -9.039 -8.979 -0.022 -7.755 -8.035 -8.430 -3.522 -2.626 -3.558 3.122 -3.764 -4.806 0.519 -3.615 -3.463 1.371 -3.997 -0.150 0.100 -4.037 -1.424 -2.410 ML 142 140 6 145 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 27 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 25 39 a u - - MP 147 146 6 151 6 2 2 29 48 -9.039 -8.979 -0.022 -7.755 -8.035 -8.430 -3.161 -2.245 -3.272 2.297 -3.723 -4.440 0.499 -3.457 -3.162 1.787 -3.690 1.822 0.223 -3.621 -1.396 -2.137 ML 148 146 6 151 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 6 151 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 26 38 C G - - MP 153 152 6 157 6 2 2 27 46 -9.039 -8.979 -0.022 -7.755 -8.035 -8.430 -4.209 -4.081 -3.954 -0.348 -2.752 -4.410 3.430 -3.527 -3.994 -0.052 -4.289 -2.025 0.794 -4.299 -0.452 -2.846 ML 154 152 6 157 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 6 1 1 26 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 6 157 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 27 37 c g - - MP 159 158 6 163 4 2 2 25 44 -6.762 -6.969 -0.061 -5.383 -3.502 -3.469 -3.376 0.173 -2.348 -3.926 2.656 -3.059 -3.406 0.424 -3.785 -1.538 1.248 -3.641 1.766 -2.304 ML 160 158 6 163 4 1 1 26 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 4 1 1 25 45 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 162 158 6 163 4 0 0 24 44 -4.568 -4.250 -2.265 -0.520 IL 163 163 5 163 4 1 1 27 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 164 164 6 164 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 28 - C - - - ML 165 164 6 167 3 1 1 22 41 -7.793 -0.023 -6.447 -1.334 1.493 -2.140 -0.832 D 166 164 6 167 3 0 0 21 40 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 29 - A - - - ML 168 167 3 170 3 1 1 21 40 -7.793 -0.023 -6.447 1.633 -2.029 -1.695 -1.539 D 169 167 3 170 3 0 0 20 39 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 30 - A - - - ML 171 170 3 173 3 1 1 20 39 -7.793 -0.023 -6.447 1.633 -2.029 -1.695 -1.539 D 172 170 3 173 3 0 0 19 38 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 31 - A - - - ML 174 173 3 176 3 1 1 19 38 -7.793 -0.023 -6.447 1.633 -2.029 -1.695 -1.539 D 175 173 3 176 3 0 0 18 37 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 32 - U - - - ML 177 176 3 179 3 1 1 18 36 -7.793 -0.023 -6.447 -1.176 -1.228 -1.891 1.517 D 178 176 3 179 3 0 0 17 36 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 33 - G - - - ML 180 179 3 182 3 1 1 16 35 -7.793 -0.023 -6.447 -1.214 -2.372 1.623 -1.757 D 181 179 3 182 3 0 0 16 34 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 34 - A - - - ML 183 182 3 185 3 1 1 15 33 -7.793 -0.023 -6.447 1.633 -2.029 -1.695 -1.539 D 184 182 3 185 3 0 0 15 33 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 35 - A - - - ML 186 185 3 188 3 1 1 13 32 -7.793 -0.023 -6.447 1.633 -2.029 -1.695 -1.539 D 187 185 3 188 3 0 0 13 32 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 36 - A - - - ML 189 188 3 191 2 1 1 1 1 * 0.000 1.633 -2.029 -1.695 -1.539 D 190 188 3 191 2 0 0 0 0 * 0.000 IL 191 191 3 191 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 192 191 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-1789 ACC RF03241 DESC mir-1789 microRNA precursor family LENG 63 MAXL 151 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 8 12:24:46 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03241/CM NSEQ 2 EFFN 1.785156 CKSUM 2883505326 STATS LOCAL MSV -8.0468 0.72529 STATS LOCAL VITERBI -9.2085 0.72529 STATS LOCAL FORWARD -3.2434 0.72529 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.26371 1.39681 1.32362 1.59041 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.94423 0.31719 2.66185 1.90148 1 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.93117 0.31908 2.65639 1.89947 2 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.47937 2.44472 1.59687 2.39089 3 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 1.84458 1.08087 2.37996 0.89147 4 u - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.39899 3.23147 0.21166 2.80594 5 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.90731 0.32261 2.64630 1.89573 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.48061 2.44160 1.59666 2.38593 7 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.49959 0.28716 3.06735 2.11239 8 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.90773 0.32255 2.64648 1.89580 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.91108 0.32205 2.64791 1.89633 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.73559 2.20146 1.26799 2.04996 11 a - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.91195 0.32192 2.64827 1.89647 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.48056 2.44175 1.59667 2.38617 13 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 0.48062 2.44159 1.59666 2.38593 14 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.40254 2.93913 0.22227 2.88422 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.49959 0.28716 3.06735 2.11239 16 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.48103 2.44054 1.59659 2.38427 17 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.91038 0.32215 2.64761 1.89622 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.48054 2.44178 1.59667 2.38623 19 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.21242 2.95209 2.70482 2.62741 20 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.90735 0.32260 2.64632 1.89574 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.91086 0.32208 2.64781 1.89630 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 1.17104 1.20653 1.54656 1.72743 23 a - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 0.48052 2.44185 1.59668 2.38633 24 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 1.04462 2.40675 0.79087 2.25746 25 g - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.91077 0.32209 2.64777 1.89628 26 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.50089 0.85413 2.25868 0.94715 27 c - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.49959 0.28716 3.06735 2.11239 28 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 0.21242 2.95209 2.70482 2.62741 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 0.21242 2.95209 2.70482 2.62741 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.21242 2.95209 2.70482 2.62741 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.34495 2.35504 2.84968 0.28582 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.39899 3.23147 0.21166 2.80594 33 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.21242 2.95209 2.70482 2.62741 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.21242 2.95209 2.70482 2.62741 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.21242 2.95209 2.70482 2.62741 36 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 1.81137 2.41963 0.43976 2.26891 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.17072 2.81452 0.27894 2.66806 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.47825 1.52332 2.21172 0.52999 39 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.61809 1.85866 2.25712 0.40568 40 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 1.95872 1.76287 1.60922 0.71874 41 u - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.17307 2.81734 0.27803 2.67172 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.17405 2.81853 0.27765 2.67325 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.39899 3.23147 0.21166 2.80594 44 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.61913 1.85873 2.25746 0.40549 45 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.17298 2.81724 0.27806 2.67158 46 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.62238 1.85895 2.25849 0.40493 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 0.21242 2.95209 2.70482 2.62741 48 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 3.09830 0.26059 2.76965 2.10706 49 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.61638 1.85855 2.25658 0.40598 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.61717 1.85860 2.25683 0.40584 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.17168 2.81567 0.27857 2.66955 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.27447 0.97386 2.00563 0.95464 53 u - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 2.17311 2.81739 0.27801 2.67178 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.17410 2.81859 0.27763 2.67333 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 0.21242 2.95209 2.70482 2.62741 56 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 2.62073 1.85884 2.25797 0.40521 57 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 2.17405 2.81852 0.27765 2.67324 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 0.21242 2.95209 2.70482 2.62741 59 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 0.21242 2.95209 2.70482 2.62741 60 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 2.62698 1.85925 2.25996 0.40413 61 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 62 2.17929 2.82482 0.27563 2.68143 62 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 63 2.18384 2.83029 0.27389 2.68855 63 G - - > 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //