INFERNAL1/a [1.1.5 | Sep 2023] NAME hvt-mir-H16 ACC RF03233 DESC hvt-mir-H16 microRNA precursor family STATES 196 NODES 40 CLEN 64 W 80 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 00:58:22 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03233/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.378906 CKSUM 1639433580 NULL 0.000 0.000 0.000 0.000 GA 70.00 TC 94.80 NC 48.60 EFP7GF -6.4070 0.72495 ECMLC 0.64527 -5.01014 3.67926 1600000 326802 0.003672 ECMGC 0.44630 -15.45282 -2.15322 1600000 151317 0.002643 ECMLI 0.64369 -3.50816 4.88191 1600000 265838 0.004514 ECMGI 0.48984 -10.42987 0.94563 1600000 105200 0.003802 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 80 99 -9.019 -8.958 -0.022 -7.735 -8.014 -8.409 IL 1 1 2 1 6 1 10 81 101 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 10 81 101 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 64 a u - - MP 3 2 3 7 6 2 12 80 99 -9.019 -8.958 -0.022 -7.735 -8.014 -8.409 -3.112 -2.218 -3.222 2.253 -3.635 -4.364 0.583 -3.407 -3.121 1.838 -3.646 1.744 0.301 -3.555 -1.314 -2.095 ML 4 2 3 7 6 1 7 78 98 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 6 78 98 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 2 76 96 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 9 79 99 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 9 79 99 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 63 C G - - MP 9 8 6 13 6 2 10 78 97 -9.019 -8.958 -0.022 -7.735 -8.014 -8.409 -4.105 -3.966 -3.867 -0.245 -2.691 -4.335 3.385 -3.455 -3.905 0.072 -4.210 -1.909 0.863 -4.201 -0.391 -2.761 ML 10 8 6 13 6 1 6 77 97 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 4 77 96 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 2 75 95 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 8 77 97 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 7 77 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 62 C G - - MP 15 14 6 19 4 2 8 76 95 -6.703 -6.910 -0.063 -5.324 -4.105 -3.966 -3.867 -0.245 -2.691 -4.335 3.385 -3.455 -3.905 0.072 -4.210 -1.909 0.863 -4.201 -0.391 -2.761 ML 16 14 6 19 4 1 5 76 96 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 4 1 3 76 95 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 18 14 6 19 4 0 2 74 94 -4.568 -4.250 -2.265 -0.520 IL 19 19 5 19 4 1 7 77 97 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 20 20 6 20 3 1 6 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - C - - - ML 21 20 6 23 3 1 6 73 93 -7.738 -0.024 -6.392 -1.210 1.443 -2.009 -0.734 D 22 20 6 23 3 0 1 72 91 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 5 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - U - - - ML 24 23 3 26 3 1 6 72 91 -8.144 -0.022 -6.462 -1.081 -1.151 -1.790 1.479 D 25 23 3 26 3 0 1 71 90 -5.620 -0.734 -1.403 IL 26 26 3 26 3 1 4 73 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 61 - A - - MR 27 26 3 29 3 1 5 71 90 -8.144 -0.022 -6.462 1.601 -1.922 -1.599 -1.423 D 28 26 3 29 3 0 0 70 89 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 3 72 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 60 - C - - MR 30 29 3 32 5 1 5 70 89 -6.898 -0.045 -6.713 -6.926 -7.817 -1.210 1.443 -2.009 -0.734 D 31 29 3 32 5 0 0 69 88 -5.352 -0.707 -2.978 -4.409 -2.404 IR 32 32 3 32 5 1 2 71 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 59 U A - - MP 33 32 3 37 6 2 6 69 88 -9.019 -8.958 -0.022 -7.735 -8.014 -8.409 -3.752 -3.556 -3.635 0.113 -2.678 -4.238 1.638 -3.340 -3.646 0.447 -4.040 -1.468 3.066 -3.917 -0.365 -2.509 ML 34 32 3 37 6 1 1 68 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 3 37 6 1 1 68 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 3 37 6 0 0 66 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 2 69 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 2 69 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 58 C G - - MP 39 38 6 43 6 2 4 67 86 -9.019 -8.958 -0.022 -7.735 -8.014 -8.409 -4.105 -3.966 -3.867 -0.245 -2.691 -4.335 3.385 -3.455 -3.905 0.072 -4.210 -1.909 0.863 -4.201 -0.391 -2.761 ML 40 38 6 43 6 1 1 66 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 1 66 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 64 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 2 67 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 2 67 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 57 A U - - MP 45 44 6 49 4 2 3 65 84 -6.703 -6.910 -0.063 -5.324 -3.446 -2.572 -3.485 3.046 -3.655 -4.693 0.625 -3.546 -3.395 1.455 -3.925 -0.110 0.205 -3.936 -1.319 -2.343 ML 46 44 6 49 4 1 1 66 85 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 4 1 1 65 85 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 48 44 6 49 4 0 0 64 84 -4.568 -4.250 -2.265 -0.520 IL 49 49 5 49 4 1 1 67 86 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 50 50 6 50 3 1 1 66 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 9 - u - - - ML 51 50 6 53 3 1 1 63 82 -8.144 -0.022 -6.462 -0.531 0.372 -1.286 0.681 D 52 50 6 53 3 0 0 61 80 -5.620 -0.734 -1.403 IL 53 53 3 53 3 1 1 63 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 56 - U - - MR 54 53 3 56 5 1 1 62 81 -6.898 -0.045 -6.713 -6.926 -7.817 -1.081 -1.151 -1.790 1.479 D 55 53 3 56 5 0 0 60 79 -5.352 -0.707 -2.978 -4.409 -2.404 IR 56 56 3 56 5 1 1 62 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 10 55 g u - - MP 57 56 3 61 6 2 2 61 80 -9.019 -8.958 -0.022 -7.735 -8.014 -8.409 -3.342 -2.230 -3.483 1.286 -3.973 -4.714 0.364 -3.548 -3.228 1.725 -3.737 2.720 0.002 -3.969 -1.575 -2.248 ML 58 56 3 61 6 1 1 59 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 3 61 6 1 1 59 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 3 61 6 0 0 57 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 60 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 60 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 11 54 U A - - MP 63 62 6 67 6 2 2 59 78 -9.019 -8.958 -0.022 -7.735 -8.014 -8.409 -3.752 -3.556 -3.635 0.113 -2.678 -4.238 1.638 -3.340 -3.646 0.447 -4.040 -1.468 3.066 -3.917 -0.365 -2.509 ML 64 62 6 67 6 1 1 57 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 57 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 55 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 58 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 58 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 12 53 C G - - MP 69 68 6 73 6 2 2 57 76 -9.019 -8.958 -0.022 -7.735 -8.014 -8.409 -4.105 -3.966 -3.867 -0.245 -2.691 -4.335 3.385 -3.455 -3.905 0.072 -4.210 -1.909 0.863 -4.201 -0.391 -2.761 ML 70 68 6 73 6 1 1 55 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 55 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 53 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 56 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 56 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 52 G C - - MP 75 74 6 79 6 2 2 55 74 -9.019 -8.958 -0.022 -7.735 -8.014 -8.409 -4.304 -2.888 -4.374 0.482 -4.616 -4.515 -0.086 -4.577 -4.027 3.513 -4.398 -0.575 -0.485 -4.177 -2.102 -3.257 ML 76 74 6 79 6 1 1 53 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 53 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 51 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 54 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 54 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 51 G C - - MP 81 80 6 85 6 2 2 53 72 -9.019 -8.958 -0.022 -7.735 -8.014 -8.409 -4.304 -2.888 -4.374 0.482 -4.616 -4.515 -0.086 -4.577 -4.027 3.513 -4.398 -0.575 -0.485 -4.177 -2.102 -3.257 ML 82 80 6 85 6 1 1 51 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 51 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 49 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 52 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 52 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 50 G C - - MP 87 86 6 91 6 2 2 51 70 -9.019 -8.958 -0.022 -7.735 -8.014 -8.409 -4.304 -2.888 -4.374 0.482 -4.616 -4.515 -0.086 -4.577 -4.027 3.513 -4.398 -0.575 -0.485 -4.177 -2.102 -3.257 ML 88 86 6 91 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 50 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 50 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 16 49 G C - - MP 93 92 6 97 4 2 2 49 68 -6.703 -6.910 -0.063 -5.324 -4.304 -2.888 -4.374 0.482 -4.616 -4.515 -0.086 -4.577 -4.027 3.513 -4.398 -0.575 -0.485 -4.177 -2.102 -3.257 ML 94 92 6 97 4 1 1 49 68 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 4 1 1 49 68 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 96 92 6 97 4 0 0 48 67 -4.568 -4.250 -2.265 -0.520 IL 97 97 5 97 4 1 1 50 70 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 98 98 6 98 3 1 1 49 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 17 - G - - - ML 99 98 6 101 3 1 1 46 64 -8.144 -0.022 -6.462 -1.099 -2.236 1.583 -1.620 D 100 98 6 101 3 0 0 45 63 -5.620 -0.734 -1.403 IL 101 101 3 101 3 1 1 47 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 48 - G - - MR 102 101 3 104 5 1 1 45 63 -6.898 -0.045 -6.713 -6.926 -7.817 -1.099 -2.236 1.583 -1.620 D 103 101 3 104 5 0 0 43 62 -5.352 -0.707 -2.978 -4.409 -2.404 IR 104 104 3 104 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 18 47 U A - - MP 105 104 3 109 6 2 2 44 62 -9.019 -8.958 -0.022 -7.735 -8.014 -8.409 -3.752 -3.556 -3.635 0.113 -2.678 -4.238 1.638 -3.340 -3.646 0.447 -4.040 -1.468 3.066 -3.917 -0.365 -2.509 ML 106 104 3 109 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 3 109 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 3 109 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 19 46 g c - - MP 111 110 6 115 6 2 2 42 60 -9.019 -8.958 -0.022 -7.735 -8.014 -8.409 -3.464 -2.403 -3.529 1.106 -3.976 -4.310 0.407 -3.792 -3.453 2.898 -3.905 1.417 0.109 -3.643 -1.541 -2.423 ML 112 110 6 115 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 20 45 U A - - MP 117 116 6 121 6 2 2 40 58 -9.019 -8.958 -0.022 -7.735 -8.014 -8.409 -3.752 -3.556 -3.635 0.113 -2.678 -4.238 1.638 -3.340 -3.646 0.447 -4.040 -1.468 3.066 -3.917 -0.365 -2.509 ML 118 116 6 121 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 21 44 U A - - MP 123 122 6 127 6 2 2 38 56 -9.019 -8.958 -0.022 -7.735 -8.014 -8.409 -3.752 -3.556 -3.635 0.113 -2.678 -4.238 1.638 -3.340 -3.646 0.447 -4.040 -1.468 3.066 -3.917 -0.365 -2.509 ML 124 122 6 127 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 22 43 U A - - MP 129 128 6 133 6 2 2 36 54 -9.019 -8.958 -0.022 -7.735 -8.014 -8.409 -3.752 -3.556 -3.635 0.113 -2.678 -4.238 1.638 -3.340 -3.646 0.447 -4.040 -1.468 3.066 -3.917 -0.365 -2.509 ML 130 128 6 133 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 23 42 g u - - MP 135 134 6 139 6 2 2 34 52 -9.019 -8.958 -0.022 -7.735 -8.014 -8.409 -3.342 -2.230 -3.483 1.286 -3.973 -4.714 0.364 -3.548 -3.228 1.725 -3.737 2.720 0.002 -3.969 -1.575 -2.248 ML 136 134 6 139 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 24 41 U A - - MP 141 140 6 145 6 2 2 32 50 -9.019 -8.958 -0.022 -7.735 -8.014 -8.409 -3.752 -3.556 -3.635 0.113 -2.678 -4.238 1.638 -3.340 -3.646 0.447 -4.040 -1.468 3.066 -3.917 -0.365 -2.509 ML 142 140 6 145 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 25 40 G C - - MP 147 146 6 151 4 2 2 30 48 -6.641 -7.886 -0.095 -4.340 -4.304 -2.888 -4.374 0.482 -4.616 -4.515 -0.086 -4.577 -4.027 3.513 -4.398 -0.575 -0.485 -4.177 -2.102 -3.257 ML 148 146 6 151 4 1 1 29 48 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 4 1 1 29 47 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 150 146 6 151 4 0 0 27 46 -12.737 -14.007 -2.036 -0.404 IL 151 151 5 151 4 1 1 29 48 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 152 152 6 152 3 1 1 30 48 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 39 - G - - MR 153 152 6 155 5 1 1 28 46 -6.898 -0.045 -6.713 -6.926 -7.817 -1.099 -2.236 1.583 -1.620 D 154 152 6 155 5 0 0 26 45 -5.352 -0.707 -2.978 -4.409 -2.404 IR 155 155 3 155 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 26 38 U A - - MP 156 155 3 160 6 2 2 27 45 -9.019 -8.958 -0.022 -7.735 -8.014 -8.409 -3.752 -3.556 -3.635 0.113 -2.678 -4.238 1.638 -3.340 -3.646 0.447 -4.040 -1.468 3.066 -3.917 -0.365 -2.509 ML 157 155 3 160 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 3 160 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 3 160 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 27 37 G C - - MP 162 161 6 166 6 2 2 25 43 -9.019 -8.958 -0.022 -7.735 -8.014 -8.409 -4.304 -2.888 -4.374 0.482 -4.616 -4.515 -0.086 -4.577 -4.027 3.513 -4.398 -0.575 -0.485 -4.177 -2.102 -3.257 ML 163 161 6 166 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 165 161 6 166 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 166 166 5 166 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 167 167 6 167 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 28 36 u g - - MP 168 167 6 172 6 2 2 23 41 -9.019 -8.958 -0.022 -7.735 -8.014 -8.409 -3.648 -3.548 -3.450 0.072 -2.357 -3.951 1.916 -3.083 -3.487 0.346 -3.826 -1.563 1.135 -3.773 2.658 -2.381 ML 169 167 6 172 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 170 167 6 172 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 171 167 6 172 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 172 172 5 172 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 173 173 6 173 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 29 35 U A - - MP 174 173 6 178 6 2 2 21 39 -9.019 -8.958 -0.022 -7.735 -8.014 -8.409 -3.752 -3.556 -3.635 0.113 -2.678 -4.238 1.638 -3.340 -3.646 0.447 -4.040 -1.468 3.066 -3.917 -0.365 -2.509 ML 175 173 6 178 6 1 1 20 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 6 178 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 6 178 6 0 0 18 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 178 178 5 178 6 1 1 21 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 30 34 u a - - MP 180 179 6 184 4 2 2 19 37 -6.703 -6.910 -0.063 -5.324 -3.217 -3.173 -3.172 0.415 -2.314 -3.804 1.946 -2.966 -3.200 0.689 -3.626 -1.253 2.197 -3.398 1.563 -2.128 ML 181 179 6 184 4 1 1 20 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 4 1 1 19 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 183 179 6 184 4 0 0 18 37 -4.568 -4.250 -2.265 -0.520 IL 184 184 5 184 4 1 1 21 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 185 185 6 185 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 31 - G - - - ML 186 185 6 188 3 1 1 15 33 -7.738 -0.024 -6.392 -1.099 -2.236 1.583 -1.620 D 187 185 6 188 3 0 0 15 33 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 32 - U - - - ML 189 188 3 191 3 1 1 13 32 -7.738 -0.024 -6.392 -1.081 -1.151 -1.790 1.479 D 190 188 3 191 3 0 0 13 32 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 33 - G - - - ML 192 191 3 194 2 1 1 1 1 * 0.000 -1.099 -2.236 1.583 -1.620 D 193 191 3 194 2 0 0 0 0 * 0.000 IL 194 194 3 194 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 39 ] - - - - - - E 195 194 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME hvt-mir-H16 ACC RF03233 DESC hvt-mir-H16 microRNA precursor family LENG 64 MAXL 152 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 00:58:22 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03233/CM NSEQ 2 EFFN 1.832031 CKSUM 1639433580 STATS LOCAL MSV -8.4732 0.72495 STATS LOCAL VITERBI -9.1772 0.72495 STATS LOCAL FORWARD -3.3745 0.72495 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.64428 1.43733 1.16977 1.35152 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 1.03577 2.43670 0.78495 2.28814 1 g - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.95634 0.31088 2.68508 1.91751 2 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.94872 0.31197 2.68183 1.91631 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.53031 0.27807 3.09922 2.13678 4 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.36828 2.37422 2.87429 0.27864 5 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.69198 1.70407 2.41040 0.41471 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.93569 0.31384 2.67626 1.91425 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 0.46645 2.46965 1.61636 2.41309 8 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 1.85466 1.07588 2.39133 0.88919 9 u - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 1.80848 2.62880 0.38082 2.51789 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.69457 1.70411 2.41139 0.41430 11 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.93671 0.31370 2.67669 1.91441 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.41950 2.96744 0.21661 2.91223 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.41923 2.96716 0.21668 2.91183 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.41891 2.96682 0.21677 2.91134 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.41858 2.96648 0.21686 2.91086 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.42633 3.26326 0.20478 2.83790 17 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.69136 1.70406 2.41017 0.41481 18 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 1.90729 2.52134 0.38610 2.39181 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.69506 1.70411 2.41158 0.41422 20 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.69507 1.70411 2.41158 0.41422 21 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.69473 1.70411 2.41145 0.41427 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 1.80906 2.62979 0.38041 2.51927 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.69384 1.70410 2.41111 0.41441 24 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.41825 2.96614 0.21696 2.91037 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.67350 1.70381 2.40329 0.41767 26 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.41148 2.95913 0.21884 2.90032 27 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.69453 1.45585 2.45487 0.48882 28 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.69071 1.70405 2.40992 0.41491 29 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.36095 1.39380 2.11653 0.62159 30 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.42633 3.26326 0.20478 2.83790 31 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.36828 2.37422 2.87429 0.27864 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.42633 3.26326 0.20478 2.83790 33 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 1.10819 2.28019 0.79955 2.13666 34 g - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.47143 2.58961 1.54085 2.44599 35 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 1.96246 2.62976 0.35525 2.44883 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 3.12423 0.25444 2.79741 2.12269 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 0.47118 2.59041 1.54086 2.44706 38 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.42633 3.26326 0.20478 2.83790 39 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 3.12291 0.25459 2.79687 2.12244 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.47131 2.58999 1.54086 2.44650 41 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.73622 1.69061 2.43417 0.41082 42 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.47111 2.59063 1.54087 2.44735 43 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.47098 2.59106 1.54087 2.44793 44 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.47081 2.59159 1.54088 2.44864 45 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.62513 0.69380 2.33542 1.10526 46 c - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 0.47034 2.59310 1.54090 2.45067 47 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.42633 3.26326 0.20478 2.83790 48 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 3.12398 0.25447 2.79731 2.12264 49 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 3.12517 0.25433 2.79779 2.12287 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 3.12663 0.25415 2.79839 2.12316 51 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 3.12843 0.25394 2.79913 2.12351 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.19054 2.84503 0.27115 2.69544 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 0.47058 2.59234 1.54089 2.44965 54 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.74374 1.69069 2.43699 0.40969 55 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 2.36828 2.37422 2.87429 0.27864 56 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 2.64583 1.88120 2.28506 0.39322 57 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 2.19136 2.84603 0.27084 2.69673 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 0.47031 2.59320 1.54090 2.45080 59 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 2.53031 0.27807 3.09922 2.13678 60 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 0.20644 2.97775 2.72790 2.65552 61 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 62 2.19471 2.85010 0.26958 2.70198 62 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 63 2.19767 2.85370 0.26847 2.70663 63 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 64 2.51835 1.53657 2.24075 0.51431 64 U - - > 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //