INFERNAL1/a [1.1.4 | Dec 2020] NAME mir-1471 ACC RF03228 DESC mir-1471 microRNA precursor family STATES 175 NODES 43 CLEN 57 W 73 ALPH RNA RF no CONS yes MAP yes DATE Thu Aug 20 20:34:18 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmcalibrate --cpu 8 /hps/nobackup/production/xfam/rfam/RELEASES/14.3/miRNA_relabelled/batch1_chunk1_searches/MIPF0001069__mir-1471_relabelled/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.675781 CKSUM 2441366028 NULL 0.000 0.000 0.000 0.000 GA 82.00 TC 82.00 NC 77.20 EFP7GF -4.8932 0.72696 ECMLC 0.64348 -4.92394 4.16299 1600000 415556 0.002888 ECMGC 0.44011 -16.51068 -2.43583 1600000 196004 0.002041 ECMLI 0.63476 -3.35983 5.48071 1600000 328314 0.003655 ECMGI 0.47325 -11.73028 0.43598 1600000 126638 0.003159 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 73 92 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 IL 1 1 2 1 6 1 9 74 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 9 74 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 57 G C - - MP 3 2 3 7 6 2 12 73 92 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -4.550 -3.003 -4.634 0.326 -4.963 -4.618 -0.374 -4.861 -4.200 3.589 -4.551 -0.696 -0.765 -4.342 -2.402 -3.513 ML 4 2 3 7 6 1 7 71 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 6 71 91 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 2 69 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 8 72 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 9 72 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 56 C G - - MP 9 8 6 13 6 2 11 71 90 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -4.350 -4.238 -4.073 -0.489 -2.836 -4.511 3.484 -3.626 -4.116 -0.218 -4.398 -2.183 0.697 -4.432 -0.539 -2.963 ML 10 8 6 13 6 1 6 69 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 5 69 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 2 67 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 8 70 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 8 70 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 55 C G - - MP 15 14 6 19 6 2 9 69 88 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -4.350 -4.238 -4.073 -0.489 -2.836 -4.511 3.484 -3.626 -4.116 -0.218 -4.398 -2.183 0.697 -4.432 -0.539 -2.963 ML 16 14 6 19 6 1 5 68 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 4 68 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 1 66 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 7 69 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 7 68 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 54 C G - - MP 21 20 6 25 4 2 8 67 86 -6.840 -7.047 -0.057 -5.461 -4.350 -4.238 -4.073 -0.489 -2.836 -4.511 3.484 -3.626 -4.116 -0.218 -4.398 -2.183 0.697 -4.432 -0.539 -2.963 ML 22 20 6 25 4 1 4 67 87 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 4 1 2 67 86 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 24 20 6 25 4 0 1 66 85 -4.568 -4.250 -2.265 -0.520 IL 25 25 5 25 4 1 6 68 88 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 26 26 6 26 3 1 6 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - G - - - ML 27 26 6 29 3 1 6 64 84 -7.864 -0.022 -6.519 -1.367 -2.552 1.669 -1.938 D 28 26 6 29 3 0 1 63 83 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 5 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - C - - - ML 30 29 3 32 3 1 6 63 83 -7.864 -0.022 -6.519 -1.501 1.553 -2.316 -0.965 D 31 29 3 32 3 0 0 62 82 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 4 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 33 32 3 35 3 1 5 62 82 -7.864 -0.022 -6.519 -1.367 -2.552 1.669 -1.938 D 34 32 3 35 3 0 0 61 80 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 4 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - U - - - ML 36 35 3 38 3 1 4 61 81 -7.864 -0.022 -6.519 -1.304 -1.332 -2.027 1.562 D 37 35 3 38 3 0 0 60 79 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 3 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - G - - - ML 39 38 3 41 3 1 3 60 79 -8.262 -0.020 -6.579 -1.367 -2.552 1.669 -1.938 D 40 38 3 41 3 0 0 59 78 -5.620 -0.734 -1.403 IL 41 41 3 41 3 1 2 61 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 53 - G - - MR 42 41 3 44 3 1 3 59 78 -8.262 -0.020 -6.579 -1.367 -2.552 1.669 -1.938 D 43 41 3 44 3 0 0 57 77 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 2 60 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 52 - A - - MR 45 44 3 47 3 1 3 58 77 -8.262 -0.020 -6.579 1.672 -2.171 -1.823 -1.694 D 46 44 3 47 3 0 0 56 76 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 1 59 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 51 - G - - MR 48 47 3 50 3 1 2 57 76 -8.262 -0.020 -6.579 -1.367 -2.552 1.669 -1.938 D 49 47 3 50 3 0 0 55 75 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 1 58 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 50 - U - - MR 51 50 3 53 3 1 2 56 75 -8.262 -0.020 -6.579 -1.304 -1.332 -2.027 1.562 D 52 50 3 53 3 0 0 54 74 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 1 57 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 49 - U - - MR 54 53 3 56 3 1 2 55 74 -8.262 -0.020 -6.579 -1.304 -1.332 -2.027 1.562 D 55 53 3 56 3 0 0 53 73 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 1 56 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 48 - U - - MR 57 56 3 59 3 1 1 54 73 -8.262 -0.020 -6.579 -1.304 -1.332 -2.027 1.562 D 58 56 3 59 3 0 0 52 72 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 1 55 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 47 - A - - MR 60 59 3 62 5 1 1 53 72 -7.007 -0.041 -6.822 -7.034 -7.926 1.672 -2.171 -1.823 -1.694 D 61 59 3 62 5 0 0 52 71 -5.352 -0.707 -2.978 -4.409 -2.404 IR 62 62 3 62 5 1 1 53 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 10 46 U A - - MP 63 62 3 67 6 2 2 52 71 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -3.986 -3.804 -3.846 -0.114 -2.833 -4.429 1.490 -3.514 -3.853 0.172 -4.236 -1.709 3.221 -4.145 -0.514 -2.697 ML 64 62 3 67 6 1 1 51 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 3 67 6 1 1 50 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 3 67 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 52 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 51 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 11 45 g u - - MP 69 68 6 73 6 2 2 50 69 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -3.492 -2.310 -3.648 1.207 -4.262 -4.989 0.108 -3.689 -3.345 1.525 -3.860 2.939 -0.253 -4.222 -1.833 -2.376 ML 70 68 6 73 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 48 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 50 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 49 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 12 44 G C - - MP 75 74 6 79 6 2 2 48 67 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -4.550 -3.003 -4.634 0.326 -4.963 -4.618 -0.374 -4.861 -4.200 3.589 -4.551 -0.696 -0.765 -4.342 -2.402 -3.513 ML 76 74 6 79 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 46 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 47 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 13 43 A U - - MP 81 80 6 85 6 2 2 46 65 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -3.631 -2.705 -3.660 3.216 -3.920 -4.968 0.370 -3.712 -3.559 1.252 -4.099 -0.208 -0.048 -4.182 -1.572 -2.504 ML 82 80 6 85 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 44 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 45 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 14 42 G C - - MP 87 86 6 91 6 2 2 44 63 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -4.550 -3.003 -4.634 0.326 -4.963 -4.618 -0.374 -4.861 -4.200 3.589 -4.551 -0.696 -0.765 -4.342 -2.402 -3.513 ML 88 86 6 91 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 42 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 43 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 15 41 C G - - MP 93 92 6 97 6 2 2 42 61 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -4.350 -4.238 -4.073 -0.489 -2.836 -4.511 3.484 -3.626 -4.116 -0.218 -4.398 -2.183 0.697 -4.432 -0.539 -2.963 ML 94 92 6 97 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 40 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 38 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 41 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 16 40 C G - - MP 99 98 6 103 6 2 2 40 59 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -4.350 -4.238 -4.073 -0.489 -2.836 -4.511 3.484 -3.626 -4.116 -0.218 -4.398 -2.183 0.697 -4.432 -0.539 -2.963 ML 100 98 6 103 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 36 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 39 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 17 39 A U - - MP 105 104 6 109 6 2 2 38 57 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -3.631 -2.705 -3.660 3.216 -3.920 -4.968 0.370 -3.712 -3.559 1.252 -4.099 -0.208 -0.048 -4.182 -1.572 -2.504 ML 106 104 6 109 6 1 1 37 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 35 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 37 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 18 38 G C - - MP 111 110 6 115 4 2 2 36 55 -6.840 -7.047 -0.057 -5.461 -4.550 -3.003 -4.634 0.326 -4.963 -4.618 -0.374 -4.861 -4.200 3.589 -4.551 -0.696 -0.765 -4.342 -2.402 -3.513 ML 112 110 6 115 4 1 1 36 56 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 4 1 1 36 55 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 114 110 6 115 4 0 0 35 54 -4.568 -4.250 -2.265 -0.520 IL 115 115 5 115 4 1 1 38 57 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 116 116 6 116 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 19 - G - - - ML 117 116 6 119 3 1 1 33 53 -8.262 -0.020 -6.579 -1.367 -2.552 1.669 -1.938 D 118 116 6 119 3 0 0 32 51 -5.620 -0.734 -1.403 IL 119 119 3 119 3 1 1 34 53 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 37 - G - - MR 120 119 3 122 5 1 1 32 52 -7.007 -0.041 -6.822 -7.034 -7.926 -1.367 -2.552 1.669 -1.938 D 121 119 3 122 5 0 0 31 50 -5.352 -0.707 -2.978 -4.409 -2.404 IR 122 122 3 122 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 20 36 U A - - MP 123 122 3 127 6 2 2 31 51 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -3.986 -3.804 -3.846 -0.114 -2.833 -4.429 1.490 -3.514 -3.853 0.172 -4.236 -1.709 3.221 -4.145 -0.514 -2.697 ML 124 122 3 127 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 3 127 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 3 127 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 21 35 G C - - MP 129 128 6 133 6 2 2 29 49 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -4.550 -3.003 -4.634 0.326 -4.963 -4.618 -0.374 -4.861 -4.200 3.589 -4.551 -0.696 -0.765 -4.342 -2.402 -3.513 ML 130 128 6 133 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 22 34 U A - - MP 135 134 6 139 4 2 2 27 47 -6.840 -7.047 -0.057 -5.461 -3.986 -3.804 -3.846 -0.114 -2.833 -4.429 1.490 -3.514 -3.853 0.172 -4.236 -1.709 3.221 -4.145 -0.514 -2.697 ML 136 134 6 139 4 1 1 28 47 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 4 1 1 28 47 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 138 134 6 139 4 0 0 27 46 -4.568 -4.250 -2.265 -0.520 IL 139 139 5 139 4 1 1 29 49 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 140 140 6 140 3 1 1 28 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 23 - a - - - ML 141 140 6 143 3 1 1 25 44 -7.864 -0.022 -6.519 0.686 -1.311 0.466 -0.720 D 142 140 6 143 3 0 0 24 43 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 24 - G - - - ML 144 143 3 146 3 1 1 24 42 -7.864 -0.022 -6.519 -1.367 -2.552 1.669 -1.938 D 145 143 3 146 3 0 0 23 42 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 25 - A - - - ML 147 146 3 149 3 1 1 22 41 -7.864 -0.022 -6.519 1.672 -2.171 -1.823 -1.694 D 148 146 3 149 3 0 0 21 40 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 26 - G - - - ML 150 149 3 152 3 1 1 21 40 -7.864 -0.022 -6.519 -1.367 -2.552 1.669 -1.938 D 151 149 3 152 3 0 0 20 39 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 27 - g - - - ML 153 152 3 155 3 1 1 20 39 -7.864 -0.022 -6.519 -0.282 0.171 0.288 -0.268 D 154 152 3 155 3 0 0 19 38 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 28 - C - - - ML 156 155 3 158 3 1 1 19 38 -7.864 -0.022 -6.519 -1.501 1.553 -2.316 -0.965 D 157 155 3 158 3 0 0 18 37 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 29 - G - - - ML 159 158 3 161 3 1 1 18 36 -7.864 -0.022 -6.519 -1.367 -2.552 1.669 -1.938 D 160 158 3 161 3 0 0 17 36 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 30 - G - - - ML 162 161 3 164 3 1 1 16 35 -7.864 -0.022 -6.519 -1.367 -2.552 1.669 -1.938 D 163 161 3 164 3 0 0 16 34 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 31 - A - - - ML 165 164 3 167 3 1 1 15 33 -7.864 -0.022 -6.519 1.672 -2.171 -1.823 -1.694 D 166 164 3 167 3 0 0 15 33 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 32 - G - - - ML 168 167 3 170 3 1 1 13 32 -7.864 -0.022 -6.519 -1.367 -2.552 1.669 -1.938 D 169 167 3 170 3 0 0 13 32 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 33 - C - - - ML 171 170 3 173 2 1 1 1 1 * 0.000 -1.501 1.553 -2.316 -0.965 D 172 170 3 173 2 0 0 0 0 * 0.000 IL 173 173 3 173 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 174 173 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME mir-1471 ACC RF03228 DESC mir-1471 microRNA precursor family LENG 57 MAXL 143 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Aug 20 20:34:18 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED NSEQ 2 EFFN 1.644531 CKSUM 2441366028 STATS LOCAL MSV -7.9051 0.72696 STATS LOCAL VITERBI -8.9772 0.72696 STATS LOCAL FORWARD -2.9312 0.72696 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.63196 1.44810 1.00320 1.59587 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.37027 2.87075 0.23493 2.82575 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.85502 0.34547 2.56900 1.84551 2 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.84813 0.34656 2.56622 1.84448 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.84394 0.34723 2.56452 1.84384 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.31488 3.13322 0.23456 2.70720 5 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.40609 0.31709 2.96985 2.03826 6 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.31488 3.13322 0.23456 2.70720 7 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.27392 2.29683 2.77449 0.30907 8 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.31488 3.13322 0.23456 2.70720 9 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.59112 1.63541 2.29645 0.46271 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 1.77002 2.52349 0.41477 2.41916 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.35387 2.85483 0.23982 2.80241 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.52577 2.35895 1.53816 2.30654 13 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.35392 2.85488 0.23980 2.80249 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.83575 0.34855 2.56118 1.84260 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.83528 0.34863 2.56099 1.84253 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.52593 2.35859 1.53816 2.30595 17 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.35299 2.85398 0.24008 2.80117 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.31488 3.13322 0.23456 2.70720 19 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.59190 1.63541 2.29673 0.46257 20 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.35331 2.85429 0.23999 2.80163 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.59600 1.63539 2.29819 0.46186 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 0.91277 2.28774 1.06668 1.87767 23 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.31488 3.13322 0.23456 2.70720 24 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23197 2.87348 2.63412 2.54148 25 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.31488 3.13322 0.23456 2.70720 26 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 1.57659 1.27083 1.19064 1.56687 27 g - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.40609 0.31709 2.96985 2.03826 28 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.31488 3.13322 0.23456 2.70720 29 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.31488 3.13322 0.23456 2.70720 30 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.23197 2.87348 2.63412 2.54148 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.31488 3.13322 0.23456 2.70720 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.40609 0.31709 2.96985 2.03826 33 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.52574 2.47587 1.47194 2.35056 34 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 3.02625 0.27959 2.68713 2.06097 35 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.52536 2.47696 1.47191 2.35209 36 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.31488 3.13322 0.23456 2.70720 37 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 3.01700 0.28081 2.68350 2.05917 38 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53646 1.79173 2.17430 0.44551 39 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.11588 2.72708 0.30217 2.59229 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.11617 2.72741 0.30205 2.59273 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 3.02059 0.28034 2.68491 2.05987 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.53886 1.79185 2.17502 0.44506 43 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 3.02376 0.27992 2.68616 2.06048 44 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.64296 1.60653 2.33174 0.46023 45 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 0.52540 2.47685 1.47191 2.35194 46 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 0.23197 2.87348 2.63412 2.54148 47 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.27392 2.29683 2.77449 0.30907 48 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 2.27392 2.29683 2.77449 0.30907 49 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.27392 2.29683 2.77449 0.30907 50 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.31488 3.13322 0.23456 2.70720 51 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 0.23197 2.87348 2.63412 2.54148 52 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.31488 3.13322 0.23456 2.70720 53 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 2.11982 2.73161 0.30052 2.59833 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.12160 2.73366 0.29978 2.60106 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 2.12430 2.73676 0.29866 2.60520 56 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 3.06138 0.27504 2.70077 2.06768 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //