INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-2209 ACC RF03223 DESC mir-2209 microRNA precursor family STATES 193 NODES 43 CLEN 63 W 79 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 2 14:01:14 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/RF03223/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.824219 CKSUM 1838857888 NULL 0.000 0.000 0.000 0.000 GA 70.00 TC 89.50 NC 45.80 EFP7GF -5.6687 0.72982 ECMLC 0.69223 -4.28850 3.75505 1600000 314285 0.003818 ECMGC 0.43244 -15.15584 -1.82833 1600000 127371 0.003140 ECMLI 0.65549 -3.16749 4.80800 1600000 223671 0.005365 ECMGI 0.48586 -9.78388 1.33218 1600000 88634 0.004513 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 79 98 -6.824 -8.070 -0.083 -4.523 IL 1 1 2 1 4 1 12 80 100 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 14 81 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 63 - A - - MR 3 2 3 5 3 1 14 79 98 -8.317 -0.019 -6.635 1.701 -2.290 -1.930 -1.824 D 4 2 3 5 3 0 7 77 97 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 13 80 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 62 - C - - MR 6 5 3 8 3 1 14 78 97 -8.317 -0.019 -6.635 -1.643 1.597 -2.464 -1.077 D 7 5 3 8 3 0 6 76 96 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 12 79 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 61 - u - - MR 9 8 3 11 5 1 14 77 96 -7.058 -0.040 -6.874 -7.086 -7.977 0.547 -0.827 -1.032 0.572 D 10 8 3 11 5 0 5 75 95 -5.352 -0.707 -2.978 -4.409 -2.404 IR 11 11 3 11 5 1 10 77 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 1 60 A U - - MP 12 11 3 16 6 2 15 76 95 -9.091 -9.030 -0.021 -7.807 -8.087 -8.482 -3.727 -2.775 -3.750 3.288 -4.056 -5.113 0.239 -3.797 -3.645 1.148 -4.189 -0.262 -0.179 -4.311 -1.702 -2.588 ML 13 11 3 16 6 1 7 74 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 3 16 6 1 7 74 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 3 16 6 0 3 72 91 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 1 9 75 95 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 1 9 75 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 2 59 G C - - MP 18 17 6 22 6 2 14 74 93 -9.091 -9.030 -0.021 -7.807 -8.087 -8.482 -4.666 -3.058 -4.759 0.250 -5.126 -4.664 -0.510 -4.996 -4.278 3.620 -4.621 -0.754 -0.897 -4.418 -2.543 -3.637 ML 19 17 6 22 6 1 7 72 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 1 7 72 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 0 2 70 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 1 9 73 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 1 9 73 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 3 58 u a - - MP 24 23 6 28 6 2 14 72 91 -9.091 -9.030 -0.021 -7.807 -8.087 -8.482 -3.393 -3.373 -3.329 0.236 -2.416 -3.944 1.854 -3.088 -3.354 0.463 -3.771 -1.458 2.292 -3.569 1.784 -2.277 ML 25 23 6 28 6 1 7 70 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 1 6 70 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 0 2 68 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 1 8 71 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 1 9 71 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 4 57 g c - - MP 30 29 6 34 6 2 13 70 89 -9.091 -9.030 -0.021 -7.807 -8.087 -8.482 -3.655 -2.504 -3.710 1.011 -4.296 -4.479 0.152 -3.999 -3.626 2.954 -4.068 1.614 -0.134 -3.815 -1.802 -2.590 ML 31 29 6 34 6 1 6 68 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 1 6 68 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 0 2 66 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 8 69 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 8 69 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 5 56 u a - - MP 36 35 6 40 6 2 12 68 87 -9.091 -9.030 -0.021 -7.807 -8.087 -8.482 -3.393 -3.373 -3.329 0.236 -2.416 -3.944 1.854 -3.088 -3.354 0.463 -3.771 -1.458 2.292 -3.569 1.784 -2.277 ML 37 35 6 40 6 1 6 66 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 1 5 66 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 0 1 64 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 7 67 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 8 67 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 6 55 A U - - MP 42 41 6 46 6 2 11 66 85 -9.091 -9.030 -0.021 -7.807 -8.087 -8.482 -3.727 -2.775 -3.750 3.288 -4.056 -5.113 0.239 -3.797 -3.645 1.148 -4.189 -0.262 -0.179 -4.311 -1.702 -2.588 ML 43 41 6 46 6 1 5 64 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 5 64 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 1 62 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 7 65 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 7 65 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 7 54 A U - - MP 48 47 6 52 6 2 9 64 83 -9.091 -9.030 -0.021 -7.807 -8.087 -8.482 -3.727 -2.775 -3.750 3.288 -4.056 -5.113 0.239 -3.797 -3.645 1.148 -4.189 -0.262 -0.179 -4.311 -1.702 -2.588 ML 49 47 6 52 6 1 5 62 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 4 62 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 1 60 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 6 63 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 6 63 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 8 53 C G - - MP 54 53 6 58 6 2 8 62 81 -9.091 -9.030 -0.021 -7.807 -8.087 -8.482 -4.471 -4.370 -4.174 -0.609 -2.909 -4.596 3.526 -3.712 -4.221 -0.358 -4.490 -2.316 0.613 -4.546 -0.614 -3.063 ML 55 53 6 58 6 1 4 61 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 3 61 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 1 59 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 5 62 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 5 61 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 9 52 c g - - MP 60 59 6 64 4 2 6 60 79 -6.904 -7.111 -0.055 -5.525 -2.826 -2.829 1.242 0.521 -2.322 -3.586 2.491 -2.874 -2.923 0.766 -3.397 -1.062 1.145 -3.068 -0.179 -1.947 ML 61 59 6 64 4 1 3 60 80 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 4 1 1 60 79 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 63 59 6 64 4 0 0 59 78 -4.568 -4.250 -2.265 -0.520 IL 64 64 5 64 4 1 5 61 81 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 65 65 6 65 3 1 4 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 10 - A - - - ML 66 65 6 68 3 1 5 57 77 -8.317 -0.019 -6.635 1.701 -2.290 -1.930 -1.824 D 67 65 6 68 3 0 0 56 76 -5.620 -0.734 -1.403 IL 68 68 3 68 3 1 3 58 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 51 - C - - MR 69 68 3 71 5 1 4 56 76 -7.058 -0.040 -6.874 -7.086 -7.977 -1.643 1.597 -2.464 -1.077 D 70 68 3 71 5 0 0 55 75 -5.352 -0.707 -2.978 -4.409 -2.404 IR 71 71 3 71 5 1 2 57 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 11 50 C G - - MP 72 71 3 76 6 2 5 55 75 -9.091 -9.030 -0.021 -7.807 -8.087 -8.482 -4.471 -4.370 -4.174 -0.609 -2.909 -4.596 3.526 -3.712 -4.221 -0.358 -4.490 -2.316 0.613 -4.546 -0.614 -3.063 ML 73 71 3 76 6 1 1 54 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 6 1 1 54 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 3 76 6 0 0 52 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 2 55 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 2 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 49 U A - - MP 78 77 6 82 6 2 4 53 73 -9.091 -9.030 -0.021 -7.807 -8.087 -8.482 -4.108 -3.931 -3.956 -0.232 -2.915 -4.527 1.411 -3.605 -3.961 0.034 -4.339 -1.833 3.288 -4.263 -0.593 -2.793 ML 79 77 6 82 6 1 1 53 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 52 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 51 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 53 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 48 c g - - MP 84 83 6 88 4 2 2 51 71 -6.904 -7.111 -0.055 -5.525 -3.042 -2.978 -3.052 0.282 -2.360 1.359 2.599 -2.966 -3.086 0.608 -3.500 -1.255 1.075 -3.247 -0.187 -2.107 ML 85 83 6 88 4 1 1 52 71 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 4 1 1 51 71 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 87 83 6 88 4 0 0 50 70 -4.568 -4.250 -2.265 -0.520 IL 88 88 5 88 4 1 1 53 73 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 89 89 6 89 3 1 1 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 14 - U - - - ML 90 89 6 92 3 1 1 49 68 -8.317 -0.019 -6.635 -1.411 -1.421 -2.141 1.596 D 91 89 6 92 3 0 0 48 67 -5.620 -0.734 -1.403 IL 92 92 3 92 3 1 1 50 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 47 - U - - MR 93 92 3 95 5 1 1 48 67 -7.058 -0.040 -6.874 -7.086 -7.977 -1.411 -1.421 -2.141 1.596 D 94 92 3 95 5 0 0 47 66 -5.352 -0.707 -2.978 -4.409 -2.404 IR 95 95 3 95 5 1 1 48 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 15 46 U A - - MP 96 95 3 100 6 2 2 47 66 -9.091 -9.030 -0.021 -7.807 -8.087 -8.482 -4.108 -3.931 -3.956 -0.232 -2.915 -4.527 1.411 -3.605 -3.961 0.034 -4.339 -1.833 3.288 -4.263 -0.593 -2.793 ML 97 95 3 100 6 1 1 45 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 3 100 6 1 1 45 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 3 100 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 46 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 16 45 C G - - MP 102 101 6 106 6 2 2 45 64 -9.091 -9.030 -0.021 -7.807 -8.087 -8.482 -4.471 -4.370 -4.174 -0.609 -2.909 -4.596 3.526 -3.712 -4.221 -0.358 -4.490 -2.316 0.613 -4.546 -0.614 -3.063 ML 103 101 6 106 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 43 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 41 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 44 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 17 44 U A - - MP 108 107 6 112 6 2 2 43 62 -9.091 -9.030 -0.021 -7.807 -8.087 -8.482 -4.108 -3.931 -3.956 -0.232 -2.915 -4.527 1.411 -3.605 -3.961 0.034 -4.339 -1.833 3.288 -4.263 -0.593 -2.793 ML 109 107 6 112 6 1 1 42 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 40 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 42 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 18 43 C G - - MP 114 113 6 118 4 2 2 41 60 -6.904 -7.111 -0.055 -5.525 -4.471 -4.370 -4.174 -0.609 -2.909 -4.596 3.526 -3.712 -4.221 -0.358 -4.490 -2.316 0.613 -4.546 -0.614 -3.063 ML 115 113 6 118 4 1 1 41 61 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 4 1 1 41 60 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 117 113 6 118 4 0 0 40 59 -4.568 -4.250 -2.265 -0.520 IL 118 118 5 118 4 1 1 43 62 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 119 119 6 119 3 1 1 42 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 19 - C - - - ML 120 119 6 122 5 1 1 38 57 -7.058 -0.040 -6.874 -7.086 -7.977 -1.643 1.597 -2.464 -1.077 D 121 119 6 122 5 0 0 37 56 -4.959 -0.803 -4.221 -2.596 -2.508 IL 122 122 3 122 5 1 1 39 58 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 20 42 U A - - MP 123 122 3 127 6 2 2 37 56 -9.091 -9.030 -0.021 -7.807 -8.087 -8.482 -4.108 -3.931 -3.956 -0.232 -2.915 -4.527 1.411 -3.605 -3.961 0.034 -4.339 -1.833 3.288 -4.263 -0.593 -2.793 ML 124 122 3 127 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 3 127 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 3 127 6 0 0 33 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 21 41 U A - - MP 129 128 6 133 6 2 2 35 54 -9.091 -9.030 -0.021 -7.807 -8.087 -8.482 -4.108 -3.931 -3.956 -0.232 -2.915 -4.527 1.411 -3.605 -3.961 0.034 -4.339 -1.833 3.288 -4.263 -0.593 -2.793 ML 130 128 6 133 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 22 40 C G - - MP 135 134 6 139 4 2 2 33 52 -6.824 -8.070 -0.083 -4.523 -4.471 -4.370 -4.174 -0.609 -2.909 -4.596 3.526 -3.712 -4.221 -0.358 -4.490 -2.316 0.613 -4.546 -0.614 -3.063 ML 136 134 6 139 4 1 1 33 52 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 4 1 1 32 51 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 138 134 6 139 4 0 0 31 50 -12.737 -14.007 -2.036 -0.404 IL 139 139 5 139 4 1 1 33 52 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 140 140 6 140 3 1 1 33 52 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 39 - A - - MR 141 140 6 143 5 1 1 31 50 -7.058 -0.040 -6.874 -7.086 -7.977 1.701 -2.290 -1.930 -1.824 D 142 140 6 143 5 0 0 30 49 -5.352 -0.707 -2.978 -4.409 -2.404 IR 143 143 3 143 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 23 38 C G - - MP 144 143 3 148 6 2 2 30 49 -9.091 -9.030 -0.021 -7.807 -8.087 -8.482 -4.471 -4.370 -4.174 -0.609 -2.909 -4.596 3.526 -3.712 -4.221 -0.358 -4.490 -2.316 0.613 -4.546 -0.614 -3.063 ML 145 143 3 148 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 3 148 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 3 148 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 24 37 G C - - MP 150 149 6 154 6 2 2 28 47 -9.091 -9.030 -0.021 -7.807 -8.087 -8.482 -4.666 -3.058 -4.759 0.250 -5.126 -4.664 -0.510 -4.996 -4.278 3.620 -4.621 -0.754 -0.897 -4.418 -2.543 -3.637 ML 151 149 6 154 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 27 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 25 36 A U - - MP 156 155 6 160 4 2 2 26 45 -6.904 -7.111 -0.055 -5.525 -3.727 -2.775 -3.750 3.288 -4.056 -5.113 0.239 -3.797 -3.645 1.148 -4.189 -0.262 -0.179 -4.311 -1.702 -2.588 ML 157 155 6 160 4 1 1 27 46 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 4 1 1 27 46 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 159 155 6 160 4 0 0 25 45 -4.568 -4.250 -2.265 -0.520 IL 160 160 5 160 4 1 1 28 48 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 161 161 6 161 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 26 - a - - - ML 162 161 6 164 3 1 1 24 42 -7.924 -0.021 -6.578 0.698 -1.361 0.488 -0.771 D 163 161 6 164 3 0 0 23 41 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 27 - u - - - ML 165 164 3 167 3 1 1 22 41 -7.924 -0.021 -6.578 0.547 -0.827 -1.032 0.572 D 166 164 3 167 3 0 0 21 40 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 28 - A - - - ML 168 167 3 170 3 1 1 21 40 -7.924 -0.021 -6.578 1.701 -2.290 -1.930 -1.824 D 169 167 3 170 3 0 0 20 39 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 29 - u - - - ML 171 170 3 173 3 1 1 20 39 -7.924 -0.021 -6.578 -0.673 0.447 -1.447 0.717 D 172 170 3 173 3 0 0 19 38 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 30 - u - - - ML 174 173 3 176 3 1 1 19 37 -7.924 -0.021 -6.578 -0.673 0.447 -1.447 0.717 D 175 173 3 176 3 0 0 18 37 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 31 - a - - - ML 177 176 3 179 3 1 1 18 36 -7.924 -0.021 -6.578 0.698 -1.361 0.488 -0.771 D 178 176 3 179 3 0 0 17 36 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 32 - A - - - ML 180 179 3 182 3 1 1 16 35 -7.924 -0.021 -6.578 1.701 -2.290 -1.930 -1.824 D 181 179 3 182 3 0 0 16 34 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 33 - U - - - ML 183 182 3 185 3 1 1 15 33 -7.924 -0.021 -6.578 -1.411 -1.421 -2.141 1.596 D 184 182 3 185 3 0 0 15 33 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 34 - u - - - ML 186 185 3 188 3 1 1 13 32 -7.924 -0.021 -6.578 0.547 -0.827 -1.032 0.572 D 187 185 3 188 3 0 0 13 32 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 35 - A - - - ML 189 188 3 191 2 1 1 1 1 * 0.000 1.701 -2.290 -1.930 -1.824 D 190 188 3 191 2 0 0 0 0 * 0.000 IL 191 191 3 191 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 192 191 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-2209 ACC RF03223 DESC mir-2209 microRNA precursor family LENG 63 MAXL 151 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 2 14:01:14 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/RF03223/CM NSEQ 2 EFFN 1.855469 CKSUM 1838857888 STATS LOCAL MSV -8.3512 0.72982 STATS LOCAL VITERBI -9.4015 0.72982 STATS LOCAL FORWARD -3.2082 0.72982 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.32133 1.40879 1.45567 1.36439 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 0.46066 2.48077 1.62598 2.42211 1 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.42500 2.97839 0.21467 2.92172 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.36886 1.39728 2.12473 0.61678 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 1.91094 2.52996 0.38323 2.39977 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.36917 1.39725 2.12484 0.61672 5 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.45980 2.48304 1.62618 2.42565 6 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.45984 2.48293 1.62617 2.42548 7 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.94601 0.31013 2.68950 1.92290 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 1.35691 0.97607 1.90159 1.53052 9 c - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 0.20354 2.99049 2.73935 2.66947 10 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.94349 0.31049 2.68841 1.92249 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.70656 1.71290 2.42540 0.40880 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.30081 0.58073 2.01564 1.57456 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.37988 2.38376 2.88652 0.27514 14 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.70455 1.71286 2.42462 0.40911 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.94809 0.30983 2.69041 1.92323 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.70780 1.71292 2.42587 0.40861 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.94893 0.30971 2.69077 1.92337 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.54557 0.27367 3.11503 2.14891 19 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.70681 1.71290 2.42550 0.40876 20 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.70738 1.71291 2.42572 0.40867 21 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.94837 0.30979 2.69053 1.92328 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.92132 0.31373 2.67874 1.91889 23 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.41996 2.97313 0.21606 2.91421 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.46041 2.48143 1.62604 2.42313 25 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.90041 2.33687 1.04526 1.92850 26 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 1.00606 1.96343 2.10584 0.98826 27 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 0.20354 2.99049 2.73935 2.66947 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 1.85968 1.07342 2.39699 0.88807 29 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 1.85968 1.07342 2.39699 0.88807 30 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.90041 2.33687 1.04526 1.92850 31 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 0.20354 2.99049 2.73935 2.66947 32 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.37988 2.38376 2.88652 0.27514 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 1.00606 1.96343 2.10584 0.98826 34 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.20354 2.99049 2.73935 2.66947 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.65520 1.89216 2.29758 0.38792 36 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 3.13768 0.25138 2.81140 2.13058 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.19841 2.85770 0.26813 2.70589 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.20354 2.99049 2.73935 2.66947 39 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.19620 2.85500 0.26896 2.70242 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.46563 2.60203 1.54962 2.45563 41 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.46639 2.59954 1.54957 2.45231 42 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.19899 2.85842 0.26791 2.70681 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.46437 2.60614 1.54970 2.46111 44 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.20052 2.86028 0.26734 2.70920 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 0.46388 2.60775 1.54974 2.46325 46 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.37988 2.38376 2.88652 0.27514 47 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 1.83612 1.30666 0.80887 2.08360 48 g - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 0.46419 2.60674 1.54972 2.46190 49 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.20143 2.86141 0.26700 2.71064 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.54557 0.27367 3.11503 2.14891 51 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 1.78076 2.06464 0.57913 1.93628 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.19714 2.85614 0.26861 2.70389 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 2.65482 1.89213 2.29746 0.38798 54 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.65539 1.89217 2.29764 0.38789 55 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 1.10550 2.28857 0.79770 2.14406 56 g - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 2.62978 0.69295 2.34275 1.10339 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 1.10549 2.28904 0.79742 2.14474 58 g - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 3.14386 0.25066 2.81394 2.13178 59 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 2.66104 1.89259 2.29950 0.38694 60 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 1.00606 1.96343 2.10584 0.98826 61 u - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 62 2.54557 0.27367 3.11503 2.14891 62 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 63 0.20354 2.99049 2.73935 2.66947 63 A - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //