INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-6715 ACC RF03221 DESC mir-6715 microRNA precursor family STATES 175 NODES 37 CLEN 57 W 73 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 2 12:07:29 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/RF03221/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.777344 CKSUM 620952787 NULL 0.000 0.000 0.000 0.000 GA 82.00 TC 82.00 NC 81.50 EFP7GF -5.2836 0.73047 ECMLC 0.62631 -5.50396 3.82613 1600000 413997 0.002899 ECMGC 0.45627 -15.85761 -2.78085 1600000 156052 0.002563 ECMLI 0.59095 -4.71399 4.72994 1600000 318379 0.003769 ECMGI 0.51889 -10.56460 0.05603 1600000 98951 0.004042 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 73 92 -6.806 -8.051 -0.084 -4.505 IL 1 1 2 1 4 1 8 74 94 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 10 75 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 57 - G - - MR 3 2 3 5 3 1 11 73 93 -8.300 -0.019 -6.617 -1.454 -2.654 1.693 -2.040 D 4 2 3 5 3 0 4 71 91 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 9 74 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 56 - G - - MR 6 5 3 8 5 1 11 72 92 -7.042 -0.040 -6.857 -7.070 -7.961 -1.454 -2.654 1.693 -2.040 D 7 5 3 8 5 0 3 71 90 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 7 72 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 1 55 A U - - MP 9 8 3 13 6 2 12 71 91 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -3.696 -2.753 -3.722 3.267 -4.013 -5.067 0.281 -3.770 -3.618 1.181 -4.160 -0.245 -0.137 -4.270 -1.661 -2.561 ML 10 8 3 13 6 1 5 69 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 5 69 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 1 67 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 6 71 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 7 70 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 54 C G - - MP 15 14 6 19 6 2 11 69 89 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.433 -4.329 -4.142 -0.571 -2.886 -4.569 3.513 -3.685 -4.188 -0.314 -4.461 -2.274 0.639 -4.510 -0.590 -3.032 ML 16 14 6 19 6 1 4 67 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 4 67 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 1 65 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 6 69 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 6 68 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 53 A U - - MP 21 20 6 25 6 2 11 67 87 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -3.696 -2.753 -3.722 3.267 -4.013 -5.067 0.281 -3.770 -3.618 1.181 -4.160 -0.245 -0.137 -4.270 -1.661 -2.561 ML 22 20 6 25 6 1 4 65 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 4 65 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 63 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 5 67 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 6 66 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 52 G C - - MP 27 26 6 31 6 2 10 65 85 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.630 -3.041 -4.720 0.274 -5.075 -4.650 -0.467 -4.954 -4.254 3.610 -4.599 -0.736 -0.856 -4.394 -2.499 -3.598 ML 28 26 6 31 6 1 4 63 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 4 63 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 61 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 5 65 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 5 64 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 51 G C - - MP 33 32 6 37 6 2 9 63 83 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.630 -3.041 -4.720 0.274 -5.075 -4.650 -0.467 -4.954 -4.254 3.610 -4.599 -0.736 -0.856 -4.394 -2.499 -3.598 ML 34 32 6 37 6 1 4 61 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 3 61 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 59 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 5 63 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 5 62 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 50 C G - - MP 39 38 6 43 6 2 8 61 81 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.433 -4.329 -4.142 -0.571 -2.886 -4.569 3.513 -3.685 -4.188 -0.314 -4.461 -2.274 0.639 -4.510 -0.590 -3.032 ML 40 38 6 43 6 1 3 60 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 3 59 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 57 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 4 61 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 4 60 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 49 A U - - MP 45 44 6 49 6 2 6 59 79 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -3.696 -2.753 -3.722 3.267 -4.013 -5.067 0.281 -3.770 -3.618 1.181 -4.160 -0.245 -0.137 -4.270 -1.661 -2.561 ML 46 44 6 49 6 1 3 58 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 2 58 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 56 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 3 59 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 3 58 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 48 C G - - MP 51 50 6 55 4 2 4 57 76 -6.884 -7.091 -0.056 -5.505 -4.433 -4.329 -4.142 -0.571 -2.886 -4.569 3.513 -3.685 -4.188 -0.314 -4.461 -2.274 0.639 -4.510 -0.590 -3.032 ML 52 50 6 55 4 1 2 57 77 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 4 1 1 57 77 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 54 50 6 55 4 0 0 56 76 -4.568 -4.250 -2.265 -0.520 IL 55 55 5 55 4 1 3 58 78 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 56 56 6 56 3 1 3 58 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 9 - a - - - ML 57 56 6 59 3 1 3 54 74 -8.300 -0.019 -6.617 0.611 0.236 -1.073 -0.287 D 58 56 6 59 3 0 0 53 73 -5.620 -0.734 -1.403 IL 59 59 3 59 3 1 2 55 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 47 - C - - MR 60 59 3 62 5 1 3 53 73 -7.042 -0.040 -6.857 -7.070 -7.961 -1.599 1.583 -2.418 -1.042 D 61 59 3 62 5 0 0 52 72 -5.352 -0.707 -2.978 -4.409 -2.404 IR 62 62 3 62 5 1 1 54 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 10 46 g u - - MP 63 62 3 67 6 2 4 52 72 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -2.593 -2.192 1.198 1.201 -2.862 -3.713 0.892 -2.986 -2.734 1.552 -3.281 1.633 0.639 -2.958 -0.821 -1.788 ML 64 62 3 67 6 1 1 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 3 67 6 1 1 51 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 3 67 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 52 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 52 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 11 45 C G - - MP 69 68 6 73 4 2 2 50 70 -6.884 -7.091 -0.056 -5.505 -4.433 -4.329 -4.142 -0.571 -2.886 -4.569 3.513 -3.685 -4.188 -0.314 -4.461 -2.274 0.639 -4.510 -0.590 -3.032 ML 70 68 6 73 4 1 1 51 71 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 4 1 1 50 70 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 72 68 6 73 4 0 0 49 69 -4.568 -4.250 -2.265 -0.520 IL 73 73 5 73 4 1 1 52 72 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 74 74 6 74 3 1 1 51 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 12 - a - - - ML 75 74 6 77 3 1 1 48 67 -8.300 -0.019 -6.617 0.611 0.236 -1.073 -0.287 D 76 74 6 77 3 0 0 47 66 -5.620 -0.734 -1.403 IL 77 77 3 77 3 1 1 49 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 44 - A - - MR 78 77 3 80 5 1 1 47 66 -7.042 -0.040 -6.857 -7.070 -7.961 1.692 -2.253 -1.897 -1.784 D 79 77 3 80 5 0 0 46 65 -5.352 -0.707 -2.978 -4.409 -2.404 IR 80 80 3 80 5 1 1 47 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 43 G C - - MP 81 80 3 85 6 2 2 46 65 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.630 -3.041 -4.720 0.274 -5.075 -4.650 -0.467 -4.954 -4.254 3.610 -4.599 -0.736 -0.856 -4.394 -2.499 -3.598 ML 82 80 3 85 6 1 1 44 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 3 85 6 1 1 44 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 3 85 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 45 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 42 G C - - MP 87 86 6 91 6 2 2 44 63 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.630 -3.041 -4.720 0.274 -5.075 -4.650 -0.467 -4.954 -4.254 3.610 -4.599 -0.736 -0.856 -4.394 -2.499 -3.598 ML 88 86 6 91 6 1 1 42 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 42 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 43 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 15 41 U A - - MP 93 92 6 97 6 2 2 42 61 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.069 -3.891 -3.921 -0.194 -2.889 -4.496 1.436 -3.576 -3.927 0.078 -4.306 -1.793 3.267 -4.225 -0.568 -2.763 ML 94 92 6 97 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 40 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 41 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 16 40 U A - - MP 99 98 6 103 6 2 2 40 59 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.069 -3.891 -3.921 -0.194 -2.889 -4.496 1.436 -3.576 -3.927 0.078 -4.306 -1.793 3.267 -4.225 -0.568 -2.763 ML 100 98 6 103 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 36 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 39 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 17 39 U A - - MP 105 104 6 109 6 2 2 38 57 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.069 -3.891 -3.921 -0.194 -2.889 -4.496 1.436 -3.576 -3.927 0.078 -4.306 -1.793 3.267 -4.225 -0.568 -2.763 ML 106 104 6 109 6 1 1 37 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 35 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 37 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 18 38 G C - - MP 111 110 6 115 4 2 2 36 55 -6.884 -7.091 -0.056 -5.505 -4.630 -3.041 -4.720 0.274 -5.075 -4.650 -0.467 -4.954 -4.254 3.610 -4.599 -0.736 -0.856 -4.394 -2.499 -3.598 ML 112 110 6 115 4 1 1 36 56 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 4 1 1 36 55 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 114 110 6 115 4 0 0 35 54 -4.568 -4.250 -2.265 -0.520 IL 115 115 5 115 4 1 1 38 57 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 116 116 6 116 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - A - - - ML 117 116 6 119 5 1 1 33 52 -7.042 -0.040 -6.857 -7.070 -7.961 1.692 -2.253 -1.897 -1.784 D 118 116 6 119 5 0 0 32 51 -4.959 -0.803 -4.221 -2.596 -2.508 IL 119 119 3 119 5 1 1 34 53 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 20 37 G C - - MP 120 119 3 124 6 2 2 32 51 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.630 -3.041 -4.720 0.274 -5.075 -4.650 -0.467 -4.954 -4.254 3.610 -4.599 -0.736 -0.856 -4.394 -2.499 -3.598 ML 121 119 3 124 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 3 124 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 3 124 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 21 36 C G - - MP 126 125 6 130 6 2 2 30 49 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.433 -4.329 -4.142 -0.571 -2.886 -4.569 3.513 -3.685 -4.188 -0.314 -4.461 -2.274 0.639 -4.510 -0.590 -3.032 ML 127 125 6 130 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 22 35 A U - - MP 132 131 6 136 4 2 2 28 47 -6.884 -7.091 -0.056 -5.505 -3.696 -2.753 -3.722 3.267 -4.013 -5.067 0.281 -3.770 -3.618 1.181 -4.160 -0.245 -0.137 -4.270 -1.661 -2.561 ML 133 131 6 136 4 1 1 29 48 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 4 1 1 29 48 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 135 131 6 136 4 0 0 28 47 -4.568 -4.250 -2.265 -0.520 IL 136 136 5 136 4 1 1 30 50 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 137 137 6 137 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 23 - U - - - ML 138 137 6 140 3 1 1 26 44 -8.300 -0.019 -6.617 -1.377 -1.393 -2.105 1.586 D 139 137 6 140 3 0 0 24 43 -5.620 -0.734 -1.403 IL 140 140 3 140 3 1 1 27 45 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 34 - U - - MR 141 140 3 143 5 1 1 25 43 -7.042 -0.040 -6.857 -7.070 -7.961 -1.377 -1.393 -2.105 1.586 D 142 140 3 143 5 0 0 23 42 -5.352 -0.707 -2.978 -4.409 -2.404 IR 143 143 3 143 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 24 33 U A - - MP 144 143 3 148 6 2 2 24 42 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.069 -3.891 -3.921 -0.194 -2.889 -4.496 1.436 -3.576 -3.927 0.078 -4.306 -1.793 3.267 -4.225 -0.568 -2.763 ML 145 143 3 148 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 3 148 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 3 148 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 25 32 U A - - MP 150 149 6 154 6 2 2 22 40 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.069 -3.891 -3.921 -0.194 -2.889 -4.496 1.436 -3.576 -3.927 0.078 -4.306 -1.793 3.267 -4.225 -0.568 -2.763 ML 151 149 6 154 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 26 31 u g - - MP 156 155 6 160 4 2 2 20 38 -6.884 -7.091 -0.056 -5.505 -3.972 -3.888 -3.701 -0.234 -2.497 -4.146 1.787 -3.258 -3.741 -0.021 -4.045 -1.893 0.955 -4.069 2.926 -2.618 ML 157 155 6 160 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 159 155 6 160 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 160 160 5 160 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 161 161 6 161 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 27 - u - - - ML 162 161 6 164 3 1 1 16 35 -7.905 -0.021 -6.559 -0.339 -0.909 0.316 0.517 D 163 161 6 164 3 0 0 16 34 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 28 - A - - - ML 165 164 3 167 3 1 1 15 33 -7.905 -0.021 -6.559 1.692 -2.253 -1.897 -1.784 D 166 164 3 167 3 0 0 15 33 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 29 - u - - - ML 168 167 3 170 3 1 1 13 32 -7.905 -0.021 -6.559 -0.659 0.439 -1.431 0.713 D 169 167 3 170 3 0 0 13 32 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 30 - U - - - ML 171 170 3 173 2 1 1 1 1 * 0.000 -1.377 -1.393 -2.105 1.586 D 172 170 3 173 2 0 0 0 0 * 0.000 IL 173 173 3 173 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 36 ] - - - - - - E 174 173 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-6715 ACC RF03221 DESC mir-6715 microRNA precursor family LENG 57 MAXL 143 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 2 12:07:29 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/RF03221/CM NSEQ 2 EFFN 1.777344 CKSUM 620952787 STATS LOCAL MSV -7.8351 0.73047 STATS LOCAL VITERBI -9.2010 0.73047 STATS LOCAL FORWARD -3.0428 0.73047 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.49618 1.39320 1.26657 1.40267 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 0.48423 2.43392 1.59319 2.37665 1 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.90143 0.32427 2.64081 1.89247 2 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.48322 2.43643 1.59335 2.38062 3 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.39956 2.93423 0.22327 2.87931 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.39965 2.93432 0.22325 2.87944 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.90549 0.32366 2.64253 1.89311 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.48316 2.43660 1.59336 2.38089 7 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.90480 0.32377 2.64224 1.89300 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 0.96305 1.22239 2.12981 1.58529 9 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 1.16724 1.98136 0.93969 1.83166 10 g - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.90607 0.32358 2.64278 1.89320 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.96305 1.22239 2.12981 1.58529 12 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.39851 2.93316 0.22357 2.87776 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.40028 2.93496 0.22307 2.88036 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.66630 1.68375 2.37857 0.42751 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.66624 1.68375 2.37855 0.42752 16 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.66587 1.68375 2.37842 0.42758 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.40017 2.93485 0.22310 2.88020 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.21345 2.94778 2.70095 2.62270 19 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.39963 2.93430 0.22325 2.87941 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.90675 0.32347 2.64307 1.89331 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.48299 2.43701 1.59339 2.38154 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.34104 2.35184 2.84555 0.28705 23 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.66241 1.68372 2.37712 0.42814 24 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.66519 1.68375 2.37816 0.42769 25 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.67382 1.44265 2.42620 0.50032 26 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 1.62093 2.01604 1.16711 1.02767 27 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 0.21345 2.94778 2.70095 2.62270 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 1.84290 1.08171 2.37805 0.89185 29 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.34104 2.35184 2.84555 0.28705 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 1.94670 2.59970 0.36464 2.42457 31 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 0.48596 2.55844 1.52046 2.42072 32 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.48571 2.55922 1.52047 2.42178 33 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.34104 2.35184 2.84555 0.28705 34 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.60814 1.85456 2.25078 0.40874 35 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.16407 2.80541 0.28158 2.65829 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 3.07235 0.26433 2.75618 2.10021 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 3.09512 0.26150 2.76546 2.10467 38 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.48644 2.55696 1.52046 2.41871 39 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.48630 2.55737 1.52046 2.41927 40 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.48614 2.55788 1.52046 2.41997 41 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 3.10306 0.26053 2.76867 2.10621 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 3.10639 0.26012 2.77001 2.10685 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.21345 2.94778 2.70095 2.62270 44 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.16990 2.81240 0.27930 2.66735 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.05982 1.56287 1.20266 1.01446 46 u - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.49445 0.28872 3.06201 2.10831 47 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.16677 2.80865 0.28052 2.66249 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 2.61064 1.85473 2.25157 0.40829 49 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.16725 2.80922 0.28033 2.66322 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 3.09465 0.26156 2.76527 2.10458 51 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 3.09597 0.26139 2.76580 2.10484 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.61335 1.85491 2.25244 0.40782 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 2.16903 2.81136 0.27964 2.66600 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.61585 1.85507 2.25323 0.40738 55 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 2.39440 3.22613 0.21284 2.80057 56 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 2.39440 3.22613 0.21284 2.80057 57 G - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //