INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-3015 ACC RF03218 DESC mir-3015 microRNA precursor family STATES 175 NODES 35 CLEN 57 W 71 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 10 23:53:53 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03218/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 3.183594 CKSUM 3332929853 NULL 0.000 0.000 0.000 0.000 GA 59.00 TC 59.00 NC 58.90 EFP7GF -8.6873 0.72262 ECMLC 0.66371 -4.74825 3.88090 1600000 368559 0.003256 ECMGC 0.46808 -13.70468 -0.64636 1600000 180555 0.002215 ECMLI 0.60283 -4.53564 4.59497 1600000 294865 0.004070 ECMGI 0.52832 -8.64000 1.94029 1600000 107075 0.003736 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 71 90 -7.273 -8.518 -0.060 -4.972 IL 1 1 2 1 4 1 3 73 92 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 4 73 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 58 - G - - MR 3 2 3 5 3 1 5 71 90 -8.743 -0.014 -7.061 0.056 -2.080 1.248 -1.517 D 4 2 3 5 3 0 0 70 89 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 3 72 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 57 - G - - MR 6 5 3 8 5 1 5 70 89 -7.459 -0.030 -7.275 -7.487 -8.378 -2.426 -3.758 1.859 -3.138 D 7 5 3 8 5 0 0 69 88 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 2 71 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 1 56 G C - - MP 9 8 3 13 6 2 6 69 88 -9.291 -9.231 -0.019 -8.007 -8.287 -8.682 -4.097 -2.877 -4.099 0.525 -4.595 -4.403 -0.166 -4.551 -4.082 3.369 -4.424 -0.637 -0.467 0.181 -2.101 -3.103 ML 10 8 3 13 6 1 1 68 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 1 68 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 0 65 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 2 69 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 2 69 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 55 U A - - MP 15 14 6 19 6 2 6 67 86 -9.291 -9.231 -0.019 -8.007 -8.287 -8.682 -5.261 -5.100 -4.973 -1.337 -3.714 -5.435 0.622 -4.475 -4.971 -1.204 -5.290 -2.969 3.669 -5.359 -1.366 -3.654 ML 16 14 6 19 6 1 1 66 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 1 66 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 63 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 2 67 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 2 67 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 54 U A - - MP 21 20 6 25 6 2 5 65 84 -9.291 -9.231 -0.019 -8.007 -8.287 -8.682 -5.261 -5.100 -4.973 -1.337 -3.714 -5.435 0.622 -4.475 -4.971 -1.204 -5.290 -2.969 3.669 -5.359 -1.366 -3.654 ML 22 20 6 25 6 1 1 64 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 1 64 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 61 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 1 65 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 1 65 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 53 C G - - MP 27 26 6 31 6 2 5 63 82 -9.291 -9.231 -0.019 -8.007 -8.287 -8.682 -5.468 -5.451 -4.994 -1.626 -3.542 -5.283 3.758 -4.444 -5.090 -1.485 -5.235 -3.427 -0.140 -5.473 -1.286 -3.904 ML 28 26 6 31 6 1 1 62 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 1 62 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 59 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 1 63 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 1 63 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 52 U A - - MP 33 32 6 37 6 2 5 61 80 -9.291 -9.231 -0.019 -8.007 -8.287 -8.682 -5.261 -5.100 -4.973 -1.337 -3.714 -5.435 0.622 -4.475 -4.971 -1.204 -5.290 -2.969 3.669 -5.359 -1.366 -3.654 ML 34 32 6 37 6 1 1 60 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 1 60 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 57 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 1 61 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 1 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 51 u a - - MP 39 38 6 43 6 2 4 59 78 -9.291 -9.231 -0.019 -8.007 -8.287 -8.682 -4.047 -4.045 -3.904 -0.335 -2.810 -4.449 1.514 -3.539 -3.921 -0.167 -4.299 -2.086 2.965 -4.186 1.398 -2.800 ML 40 38 6 43 6 1 1 58 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 1 58 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 55 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 1 59 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 1 59 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 50 A U - - MP 45 44 6 49 6 2 4 57 76 -9.291 -9.231 -0.019 -8.007 -8.287 -8.682 -4.582 -3.439 -4.511 3.673 -5.290 -6.456 -0.936 -4.498 -4.408 0.218 -4.992 -0.809 -1.347 -5.486 -2.872 -3.324 ML 46 44 6 49 6 1 1 56 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 1 56 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 53 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 1 57 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 1 57 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 49 C G - - MP 51 50 6 55 6 2 4 55 74 -9.291 -9.231 -0.019 -8.007 -8.287 -8.682 -5.468 -5.451 -4.994 -1.626 -3.542 -5.283 3.758 -4.444 -5.090 -1.485 -5.235 -3.427 -0.140 -5.473 -1.286 -3.904 ML 52 50 6 55 6 1 1 54 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 1 54 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 52 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 55 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 1 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 48 A U - - MP 57 56 6 61 6 2 4 53 72 -9.291 -9.231 -0.019 -8.007 -8.287 -8.682 -3.890 -2.780 -4.011 3.152 -4.958 -5.700 -0.656 -4.160 -3.796 1.018 -4.385 1.604 -0.854 -4.652 -2.537 -2.776 ML 58 56 6 61 6 1 1 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 53 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 10 47 A U - - MP 63 62 6 67 6 2 3 51 70 -9.291 -9.231 -0.019 -8.007 -8.287 -8.682 -4.582 -3.439 -4.511 3.673 -5.290 -6.456 -0.936 -4.498 -4.408 0.218 -4.992 -0.809 -1.347 -5.486 -2.872 -3.324 ML 64 62 6 67 6 1 1 51 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 51 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 49 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 51 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 11 46 u a - - MP 69 68 6 73 4 2 2 49 68 -7.387 -7.595 -0.302 -2.494 -3.158 -3.248 -3.200 0.181 0.751 -3.907 1.597 -3.122 -3.228 0.246 -3.706 -1.513 2.375 -3.404 1.286 -2.235 ML 70 68 6 73 4 1 1 50 69 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 4 1 1 50 69 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 72 68 6 73 4 0 0 49 68 -4.568 -4.250 -2.265 -0.520 IL 73 73 5 73 4 1 1 52 71 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 74 74 6 74 3 1 1 51 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 12 - u - - - ML 75 74 6 77 3 1 1 47 65 -8.516 -0.017 -6.834 -0.330 -0.052 -0.127 0.405 D 76 74 6 77 3 0 0 46 64 -6.723 -0.296 -2.506 IL 77 77 3 77 3 1 1 48 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 45 - C - - MR 78 77 3 80 5 1 1 46 64 -7.459 -0.250 -7.275 -2.799 -8.378 -1.290 1.171 -2.154 0.157 D 79 77 3 80 5 0 0 45 63 -5.352 -0.707 -2.978 -4.409 -2.404 IR 80 80 3 80 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 44 u a - - MP 81 80 3 85 6 2 2 45 63 -9.181 -9.120 -0.020 -7.897 -8.176 -8.571 -2.760 -2.772 -2.850 0.565 -2.390 -3.624 1.593 -2.896 0.858 0.698 -3.387 -0.999 2.439 -3.042 -0.270 -1.928 ML 82 80 3 85 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 3 85 6 1 1 43 61 -7.965 -6.694 -2.602 -6.672 -0.362 -4.885 1.368 -1.366 -1.094 -0.829 D 84 80 3 85 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 45 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 43 c g - - MP 87 86 6 91 6 2 2 43 61 -9.181 -9.120 -0.020 -7.897 -8.176 -8.571 -3.986 -3.982 -3.790 -0.247 -2.614 -4.283 2.992 -3.370 -3.814 -0.059 -4.160 -2.019 0.982 -4.092 1.664 -2.679 ML 88 86 6 91 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 41 59 -7.965 -6.694 -2.602 -6.672 -0.362 -4.885 -0.505 -1.516 1.271 -0.910 D 90 86 6 91 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 43 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 42 C G - - MP 93 92 6 97 6 2 2 41 59 -9.181 -9.120 -0.020 -7.897 -8.176 -8.571 -3.812 -3.872 -3.672 -0.261 1.308 -4.202 3.019 -3.341 -3.708 -0.132 -4.077 -2.027 0.925 -3.958 -0.337 -2.622 ML 94 92 6 97 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 39 58 -7.965 -6.694 -2.602 -6.672 -0.362 -4.885 -0.505 -1.516 1.271 -0.910 D 96 92 6 97 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 41 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 16 41 g c - - MP 99 98 6 103 6 2 2 39 57 -9.181 -9.120 -0.020 -7.897 -8.176 -8.571 -3.261 0.810 -3.396 1.059 -3.924 -4.023 0.271 -3.709 -3.322 2.653 -3.691 1.295 0.009 -3.433 -1.578 -2.334 ML 100 98 6 103 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 38 56 -7.965 -6.694 -0.607 -6.672 -1.806 -4.885 -0.595 -0.771 -1.260 1.223 D 102 98 6 103 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 39 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 17 40 G C - - MP 105 104 6 109 6 2 2 37 55 -9.291 -9.231 -0.019 -8.007 -8.287 -8.682 -5.541 -3.484 -5.762 -0.359 -6.344 -4.991 -1.510 -6.028 -4.810 3.783 -5.099 -1.226 -1.878 -4.980 -3.598 -4.628 ML 106 104 6 109 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 37 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 18 39 U A - - MP 111 110 6 115 6 2 2 35 53 -9.291 -9.231 -0.019 -8.007 -8.287 -8.682 -5.261 -5.100 -4.973 -1.337 -3.714 -5.435 0.622 -4.475 -4.971 -1.204 -5.290 -2.969 3.669 -5.359 -1.366 -3.654 ML 112 110 6 115 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 35 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 19 38 u a - - MP 117 116 6 121 6 2 2 33 51 -9.291 -9.231 -0.019 -8.007 -8.287 -8.682 -2.316 -2.438 -2.465 0.721 -2.200 -3.282 1.527 0.267 -2.511 0.738 -3.055 -0.871 2.166 -2.624 -0.212 0.439 ML 118 116 6 121 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 33 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 20 37 A U - - MP 123 122 6 127 6 2 2 31 49 -9.291 -9.231 -0.019 -8.007 -8.287 -8.682 -3.472 -2.790 -3.575 3.039 -3.835 -4.780 0.153 -3.735 -3.505 0.937 -4.064 -0.421 -0.157 -3.973 -1.662 1.058 ML 124 122 6 127 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 21 36 A U - - MP 129 128 6 133 6 2 2 29 47 -9.291 -9.231 -0.019 -8.007 -8.287 -8.682 -4.582 -3.439 -4.511 3.673 -5.290 -6.456 -0.936 -4.498 -4.408 0.218 -4.992 -0.809 -1.347 -5.486 -2.872 -3.324 ML 130 128 6 133 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 22 35 g u - - MP 135 134 6 139 4 2 2 27 45 -7.387 -1.611 -0.619 -6.009 -3.486 2.185 -4.147 0.809 -5.190 -4.235 -0.630 -3.906 -3.223 0.898 -3.405 2.546 -1.070 -4.258 -2.591 -2.623 ML 136 134 6 139 4 1 1 26 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 4 1 1 26 44 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 138 134 6 139 4 0 0 25 43 -4.568 -4.250 -2.265 -0.520 IL 139 139 5 139 4 1 1 27 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 140 140 6 140 3 1 1 25 44 -2.399 -1.755 -0.960 0.000 0.000 0.000 0.000 [ MATL 26 ] 23 - U - - - ML 141 140 6 143 5 1 1 24 43 -6.996 -0.042 -6.811 -7.023 -7.915 -1.281 -1.314 -2.003 1.554 D 142 140 6 143 5 0 0 23 42 -6.597 -0.213 -5.858 -4.233 -4.145 IL 143 143 3 143 5 1 1 25 43 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 24 33 G C - - MP 144 143 3 148 6 2 2 23 42 -9.291 -9.231 -0.019 -8.007 -8.287 -8.682 -4.485 0.445 -4.519 0.377 -5.298 -4.714 -0.675 -4.954 -4.315 3.460 -4.660 -0.697 -0.947 -4.282 -2.655 -3.447 ML 145 143 3 148 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 3 148 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 3 148 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 25 32 U A - - MP 150 149 6 154 6 2 2 21 40 -9.291 -9.231 -0.019 -8.007 -8.287 -8.682 -5.261 -5.100 -4.973 -1.337 -3.714 -5.435 0.622 -4.475 -4.971 -1.204 -5.290 -2.969 3.669 -5.359 -1.366 -3.654 ML 151 149 6 154 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 26 31 u g - - MP 156 155 6 160 4 2 2 19 38 -7.387 -7.595 -0.039 -6.009 -4.309 -4.446 -4.040 -0.892 2.291 -4.446 1.423 -3.605 -4.104 -0.823 -4.400 -2.730 0.568 -4.391 2.358 -3.008 ML 157 155 6 160 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 159 155 6 160 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 160 160 5 160 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 161 161 6 161 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 27 - A - - - ML 162 161 6 164 3 1 1 16 34 -8.377 -0.015 -7.031 1.273 -1.866 -0.127 -1.347 D 163 161 6 164 3 0 0 16 34 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 28 - A - - - ML 165 164 3 167 3 1 1 14 33 -8.377 -0.015 -7.031 1.287 -1.874 -0.157 -1.358 D 166 164 3 167 3 0 0 15 33 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 29 - u - - - ML 168 167 3 170 3 1 1 13 31 -8.377 -0.015 -7.031 -1.066 0.567 -1.882 0.823 D 169 167 3 170 3 0 0 13 32 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 30 - u - - - ML 171 170 3 173 2 1 1 1 1 * 0.000 -1.066 0.567 -1.882 0.823 D 172 170 3 173 2 0 0 0 0 * 0.000 IL 173 173 3 173 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 34 ] - - - - - - E 174 173 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-3015 ACC RF03218 DESC mir-3015 microRNA precursor family LENG 57 MAXL 135 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Jul 10 23:53:53 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03218/CM NSEQ 4 EFFN 3.980469 CKSUM 3332929853 STATS LOCAL MSV -8.0096 0.72262 STATS LOCAL VITERBI -8.4541 0.72262 STATS LOCAL FORWARD -2.7032 0.72262 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.32656 1.58606 1.45090 1.21902 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 0.00000 * 1 2.40617 2.99853 0.32183 2.00132 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 2 3.79008 2.55329 3.62360 0.13594 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 3 3.79005 2.55328 3.62358 0.13594 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 4 3.88775 0.12043 3.74012 2.67043 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 5 3.78720 2.55297 3.62203 0.13609 5 U - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 6 2.98347 1.76117 2.78280 0.33453 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 7 0.15579 3.60789 2.44381 3.49589 7 A - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 8 3.88115 0.12079 3.73643 2.66915 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 9 0.49026 3.38356 1.17111 3.13311 9 A - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 10 0.15594 3.60640 2.44343 3.49398 10 A - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 11 2.58476 1.19583 2.43462 0.62642 11 U - - < 1.38629 1.38629 1.38629 1.38629 0.20796 4.12713 1.76241 1.46634 0.26236 1.09861 0.40547 12 1.66806 1.40244 1.45231 1.10454 12 u - - - 1.38629 1.38629 1.38629 1.38629 0.03895 3.95812 3.95812 1.46634 0.26236 2.53695 0.08241 13 2.27015 1.62885 1.35658 0.81417 13 u - - < 1.38629 1.38629 1.38629 1.38629 0.03895 3.95812 3.95812 1.46634 0.26236 2.53695 0.08241 14 2.87369 0.61994 2.67100 1.08960 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.03895 3.95812 3.95812 1.46634 0.26236 2.53695 0.08241 15 2.88802 0.33292 2.71688 1.82384 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.03895 3.95812 3.95812 1.46634 0.26236 2.53695 0.08241 16 1.33595 2.58499 0.55545 2.43176 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.03895 3.95812 3.95812 1.46634 0.26236 0.17223 1.84380 17 3.00050 3.85191 0.09838 3.78567 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 18 3.75731 2.54963 3.60568 0.13768 18 U - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 19 2.11080 1.28166 1.99958 0.76381 19 u - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 20 0.54587 2.82643 1.91511 1.54125 20 A - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 21 0.15664 3.59964 2.44173 3.48530 21 A - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 22 0.85762 3.28228 0.69898 3.18936 22 g - - < 1.38629 1.38629 1.38629 1.38629 0.41777 4.12713 1.12283 1.46634 0.26236 1.09861 0.40547 23 2.47786 2.46454 2.98945 0.24755 23 U - - - 1.38629 1.38629 1.38629 1.38629 0.04782 3.75719 3.75719 1.46634 0.26236 0.09453 2.40569 24 1.76585 3.31655 0.28635 3.17765 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 25 3.76938 2.55099 3.61231 0.13703 25 U - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 26 3.40631 0.70574 3.28651 0.83078 26 c - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 27 0.46283 2.85807 1.45939 2.51648 27 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 28 0.45334 2.86352 1.48147 2.52417 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 29 2.27208 0.94866 2.85275 0.79417 29 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 30 2.27208 0.94866 2.85275 0.79417 30 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 31 0.85244 3.42233 0.69596 3.16072 31 g - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 32 0.15810 3.77495 2.37971 3.48284 32 A - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 33 3.32752 0.21138 3.10898 2.20723 33 C - - > 1.38629 1.38629 1.38629 1.38629 0.41777 1.12283 4.12713 0.09636 2.38749 1.09861 0.40547 34 3.34330 0.87799 3.08510 0.68650 35 U - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 35 3.67012 2.80392 3.39556 0.12734 36 U - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 36 2.89498 2.21139 2.62388 0.27098 37 U - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 37 1.07759 2.16773 1.46283 1.15974 38 a - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 38 0.16188 3.73133 2.37146 3.43726 39 A - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 39 3.70284 0.13169 3.57997 2.64708 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 40 2.59939 0.69429 2.40624 1.09036 41 c - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 41 1.26897 2.86879 0.52800 2.62655 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 42 2.05827 2.82305 0.30349 2.59476 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 43 0.57655 2.30711 1.54556 2.07604 44 A - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 44 2.45006 0.52003 3.06867 1.29929 45 C - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 45 0.72142 2.60202 1.05856 2.37664 46 a - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 46 3.70314 2.80995 3.41109 0.12540 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 47 3.32864 2.19669 3.16669 0.20968 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 48 2.94867 3.89919 0.10370 3.65611 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 49 3.70718 2.81068 3.41296 0.12517 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 50 0.61592 2.94842 1.06866 2.74942 51 A - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 51 0.15456 3.81778 2.38754 3.52769 52 A - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 52 2.95299 3.90628 0.10306 3.66393 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 53 0.15411 3.82327 2.38853 3.53344 54 A - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 54 0.15375 3.82782 2.38934 3.53821 55 A - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 55 3.13556 0.25028 2.82566 2.13138 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 56 3.33730 4.28762 0.07324 3.84673 57 G - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 57 1.36486 3.00017 0.47432 2.62419 58 G - - : 1.38629 1.38629 1.38629 1.38629 0.01653 4.11087 * 1.46634 0.26236 0.00000 * //