INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-3167 ACC RF03217 DESC mir-3167 microRNA precursor family STATES 181 NODES 36 CLEN 59 W 74 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 2 12:11:33 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/RF03217/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.675781 CKSUM 2813218463 NULL 0.000 0.000 0.000 0.000 GA 86.00 TC 86.40 NC 80.10 EFP7GF -6.0296 0.72797 ECMLC 0.57607 -6.13278 4.02745 1600000 417920 0.002871 ECMGC 0.42038 -16.75099 -0.48203 1600000 373472 0.001071 ECMLI 0.57259 -4.68659 5.03182 1600000 313241 0.003831 ECMGI 0.44675 -11.18266 2.41079 1600000 173571 0.002305 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 74 93 -6.766 -8.011 -0.087 -4.464 IL 1 1 2 1 4 1 1 75 94 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 1 76 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 59 - U - - MR 3 2 3 5 3 1 1 74 93 -8.262 -0.020 -6.579 -1.304 -1.332 -2.027 1.562 D 4 2 3 5 3 0 0 72 91 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 1 75 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 58 - G - - MR 6 5 3 8 5 1 1 73 92 -7.007 -0.041 -6.822 -7.034 -7.926 -1.367 -2.552 1.669 -1.938 D 7 5 3 8 5 0 0 71 91 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 1 73 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 1 57 C G - - MP 9 8 3 13 6 2 2 72 91 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -4.350 -4.238 -4.073 -0.489 -2.836 -4.511 3.484 -3.626 -4.116 -0.218 -4.398 -2.183 0.697 -4.432 -0.539 -2.963 ML 10 8 3 13 6 1 1 70 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 1 70 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 0 68 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 1 71 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 1 71 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 56 A U - - MP 15 14 6 19 6 2 2 70 89 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -3.631 -2.705 -3.660 3.216 -3.920 -4.968 0.370 -3.712 -3.559 1.252 -4.099 -0.208 -0.048 -4.182 -1.572 -2.504 ML 16 14 6 19 6 1 1 68 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 1 68 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 66 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 1 69 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 1 69 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 55 G C - - MP 21 20 6 25 6 2 2 68 87 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -4.550 -3.003 -4.634 0.326 -4.963 -4.618 -0.374 -4.861 -4.200 3.589 -4.551 -0.696 -0.765 -4.342 -2.402 -3.513 ML 22 20 6 25 6 1 1 66 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 1 66 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 64 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 1 67 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 1 67 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 54 U A - - MP 27 26 6 31 6 2 2 66 85 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -3.986 -3.804 -3.846 -0.114 -2.833 -4.429 1.490 -3.514 -3.853 0.172 -4.236 -1.709 3.221 -4.145 -0.514 -2.697 ML 28 26 6 31 6 1 1 64 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 1 64 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 62 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 1 65 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 1 65 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 53 A U - - MP 33 32 6 37 6 2 2 64 83 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -3.631 -2.705 -3.660 3.216 -3.920 -4.968 0.370 -3.712 -3.559 1.252 -4.099 -0.208 -0.048 -4.182 -1.572 -2.504 ML 34 32 6 37 6 1 1 62 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 1 62 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 60 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 1 63 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 1 63 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 52 U A - - MP 39 38 6 43 6 2 2 62 81 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -3.986 -3.804 -3.846 -0.114 -2.833 -4.429 1.490 -3.514 -3.853 0.172 -4.236 -1.709 3.221 -4.145 -0.514 -2.697 ML 40 38 6 43 6 1 1 60 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 1 60 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 58 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 1 61 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 1 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 51 U A - - MP 45 44 6 49 6 2 2 60 79 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -3.986 -3.804 -3.846 -0.114 -2.833 -4.429 1.490 -3.514 -3.853 0.172 -4.236 -1.709 3.221 -4.145 -0.514 -2.697 ML 46 44 6 49 6 1 1 58 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 1 58 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 56 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 1 59 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 1 59 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 50 U A - - MP 51 50 6 55 6 2 2 58 77 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -3.986 -3.804 -3.846 -0.114 -2.833 -4.429 1.490 -3.514 -3.853 0.172 -4.236 -1.709 3.221 -4.145 -0.514 -2.697 ML 52 50 6 55 6 1 1 56 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 1 56 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 54 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 57 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 1 57 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 49 C G - - MP 57 56 6 61 6 2 2 56 75 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -4.350 -4.238 -4.073 -0.489 -2.836 -4.511 3.484 -3.626 -4.116 -0.218 -4.398 -2.183 0.697 -4.432 -0.539 -2.963 ML 58 56 6 61 6 1 1 54 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 54 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 52 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 55 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 10 48 U A - - MP 63 62 6 67 6 2 2 54 73 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -3.986 -3.804 -3.846 -0.114 -2.833 -4.429 1.490 -3.514 -3.853 0.172 -4.236 -1.709 3.221 -4.145 -0.514 -2.697 ML 64 62 6 67 6 1 1 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 53 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 11 47 G C - - MP 69 68 6 73 6 2 2 52 71 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -4.550 -3.003 -4.634 0.326 -4.963 -4.618 -0.374 -4.861 -4.200 3.589 -4.551 -0.696 -0.765 -4.342 -2.402 -3.513 ML 70 68 6 73 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 51 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 12 46 A U - - MP 75 74 6 79 6 2 2 50 69 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -3.631 -2.705 -3.660 3.216 -3.920 -4.968 0.370 -3.712 -3.559 1.252 -4.099 -0.208 -0.048 -4.182 -1.572 -2.504 ML 76 74 6 79 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 49 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 13 45 A U - - MP 81 80 6 85 6 2 2 48 67 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -3.631 -2.705 -3.660 3.216 -3.920 -4.968 0.370 -3.712 -3.559 1.252 -4.099 -0.208 -0.048 -4.182 -1.572 -2.504 ML 82 80 6 85 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 47 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 14 44 A U - - MP 87 86 6 91 6 2 2 46 65 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -3.631 -2.705 -3.660 3.216 -3.920 -4.968 0.370 -3.712 -3.559 1.252 -4.099 -0.208 -0.048 -4.182 -1.572 -2.504 ML 88 86 6 91 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 15 43 U A - - MP 93 92 6 97 6 2 2 44 63 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -3.986 -3.804 -3.846 -0.114 -2.833 -4.429 1.490 -3.514 -3.853 0.172 -4.236 -1.709 3.221 -4.145 -0.514 -2.697 ML 94 92 6 97 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 43 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 16 42 u g - - MP 99 98 6 103 6 2 2 42 61 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -3.890 -3.802 -3.638 -0.157 -2.460 -4.097 1.821 -3.213 -3.676 0.071 -3.990 -1.810 1.001 -3.994 2.866 -2.558 ML 100 98 6 103 6 1 1 40 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 41 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 17 41 C G - - MP 105 104 6 109 6 2 2 40 59 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -4.350 -4.238 -4.073 -0.489 -2.836 -4.511 3.484 -3.626 -4.116 -0.218 -4.398 -2.183 0.697 -4.432 -0.539 -2.963 ML 106 104 6 109 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 39 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 18 40 U A - - MP 111 110 6 115 4 2 2 38 57 -6.840 -7.047 -0.057 -5.461 -3.986 -3.804 -3.846 -0.114 -2.833 -4.429 1.490 -3.514 -3.853 0.172 -4.236 -1.709 3.221 -4.145 -0.514 -2.697 ML 112 110 6 115 4 1 1 38 57 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 4 1 1 38 57 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 114 110 6 115 4 0 0 37 56 -4.568 -4.250 -2.265 -0.520 IL 115 115 5 115 4 1 1 40 59 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 116 116 6 116 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 19 - u - - - ML 117 116 6 119 3 1 1 35 54 -7.864 -0.022 -6.519 0.538 -0.800 -1.002 0.560 D 118 116 6 119 3 0 0 34 53 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 37 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 20 - U - - - ML 120 119 3 122 3 1 1 34 53 -7.864 -0.022 -6.519 -1.304 -1.332 -2.027 1.562 D 121 119 3 122 3 0 0 33 52 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 1 36 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 21 - U - - - ML 123 122 3 125 5 1 1 33 51 -7.007 -0.041 -6.822 -7.034 -7.926 -1.304 -1.332 -2.027 1.562 D 124 122 3 125 5 0 0 31 50 -4.959 -0.803 -4.221 -2.596 -2.508 IL 125 125 3 125 5 1 1 33 52 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 22 39 U A - - MP 126 125 3 130 6 2 2 32 50 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -3.986 -3.804 -3.846 -0.114 -2.833 -4.429 1.490 -3.514 -3.853 0.172 -4.236 -1.709 3.221 -4.145 -0.514 -2.697 ML 127 125 3 130 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 3 130 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 3 130 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 23 38 u g - - MP 132 131 6 136 6 2 2 30 48 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -3.890 -3.802 -3.638 -0.157 -2.460 -4.097 1.821 -3.213 -3.676 0.071 -3.990 -1.810 1.001 -3.994 2.866 -2.558 ML 133 131 6 136 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 24 37 C G - - MP 138 137 6 142 6 2 2 28 46 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -4.350 -4.238 -4.073 -0.489 -2.836 -4.511 3.484 -3.626 -4.116 -0.218 -4.398 -2.183 0.697 -4.432 -0.539 -2.963 ML 139 137 6 142 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 25 36 U A - - MP 144 143 6 148 6 2 2 26 44 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -3.986 -3.804 -3.846 -0.114 -2.833 -4.429 1.490 -3.514 -3.853 0.172 -4.236 -1.709 3.221 -4.145 -0.514 -2.697 ML 145 143 6 148 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 26 35 G C - - MP 150 149 6 154 6 2 2 24 42 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -4.550 -3.003 -4.634 0.326 -4.963 -4.618 -0.374 -4.861 -4.200 3.589 -4.551 -0.696 -0.765 -4.342 -2.402 -3.513 ML 151 149 6 154 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 27 34 A U - - MP 156 155 6 160 6 2 2 22 40 -9.067 -9.007 -0.022 -7.783 -8.063 -8.458 -3.631 -2.705 -3.660 3.216 -3.920 -4.968 0.370 -3.712 -3.559 1.252 -4.099 -0.208 -0.048 -4.182 -1.572 -2.504 ML 157 155 6 160 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 6 160 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 28 33 A U - - MP 162 161 6 166 4 2 2 20 38 -6.840 -7.047 -0.057 -5.461 -3.631 -2.705 -3.660 3.216 -3.920 -4.968 0.370 -3.712 -3.559 1.252 -4.099 -0.208 -0.048 -4.182 -1.572 -2.504 ML 163 161 6 166 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 165 161 6 166 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 166 166 5 166 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 167 167 6 167 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 29 - a - - - ML 168 167 6 170 3 1 1 16 35 -7.864 -0.022 -6.519 0.686 -1.311 0.466 -0.720 D 169 167 6 170 3 0 0 16 34 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 30 - U - - - ML 171 170 3 173 3 1 1 15 33 -7.864 -0.022 -6.519 -1.304 -1.332 -2.027 1.562 D 172 170 3 173 3 0 0 15 33 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 31 - U - - - ML 174 173 3 176 3 1 1 13 32 -7.864 -0.022 -6.519 -1.304 -1.332 -2.027 1.562 D 175 173 3 176 3 0 0 13 32 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 32 - C - - - ML 177 176 3 179 2 1 1 1 1 * 0.000 -1.501 1.553 -2.316 -0.965 D 178 176 3 179 2 0 0 0 0 * 0.000 IL 179 179 3 179 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 35 ] - - - - - - E 180 179 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-3167 ACC RF03217 DESC mir-3167 microRNA precursor family LENG 59 MAXL 145 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 2 12:11:33 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/RF03217/CM NSEQ 2 EFFN 1.964844 CKSUM 2813218463 STATS LOCAL MSV -8.4678 0.72797 STATS LOCAL VITERBI -9.5422 0.72797 STATS LOCAL FORWARD -3.0557 0.72797 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.42244 1.60680 1.45073 1.12717 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.99266 0.29372 2.74999 1.96305 1 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.42975 2.54705 1.67225 2.48663 2 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.46269 3.04116 0.20285 2.98344 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.76454 1.75447 2.49146 0.38389 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 0.42939 2.54808 1.67237 2.48820 5 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.76436 1.75446 2.49139 0.38392 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.76405 1.75445 2.49126 0.38396 7 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.76373 1.75445 2.49114 0.38401 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 3.00224 0.29241 2.75426 1.96463 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.76319 1.75443 2.49092 0.38409 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.46212 3.04053 0.20301 2.98255 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.42961 2.54746 1.67230 2.48725 12 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.42962 2.54740 1.67229 2.48717 13 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 0.42964 2.54736 1.67229 2.48710 14 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.76243 1.75441 2.49061 0.38420 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.76267 1.48718 2.53079 0.46002 16 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 3.00067 0.29263 2.75356 1.96437 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.76222 1.75441 2.49053 0.38423 18 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 1.00151 1.97708 2.12069 0.98282 19 u - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.43343 2.42787 2.94285 0.25965 20 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.43343 2.42787 2.94285 0.25965 21 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.76623 1.75451 2.49214 0.38364 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.76679 1.48702 2.53255 0.45944 23 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 3.00586 0.29192 2.75587 1.96522 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.76566 1.75450 2.49191 0.38373 25 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.46357 3.04210 0.20263 2.98478 26 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 0.42938 2.54810 1.67237 2.48822 27 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 0.42944 2.54794 1.67235 2.48799 28 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 0.89428 2.36207 1.03491 1.95466 29 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.43343 2.42787 2.94285 0.25965 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.43343 2.42787 2.94285 0.25965 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.61597 0.25441 3.18770 2.20491 32 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.71602 1.94466 2.36166 0.36160 33 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.71624 1.94468 2.36174 0.36156 34 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 3.19323 0.23855 2.87294 2.16581 35 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.43635 2.67134 1.59129 2.51597 36 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.23893 2.92063 0.25329 2.76016 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.00244 2.70369 0.33303 2.50979 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.43748 2.66734 1.59112 2.51077 39 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.43659 2.67049 1.59126 2.51486 40 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.23853 2.92012 0.25343 2.75951 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.00309 2.70455 0.33271 2.51085 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.43656 2.67060 1.59126 2.51500 43 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.71450 1.94453 2.36114 0.36184 44 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.71464 1.94454 2.36119 0.36182 45 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.71482 1.94456 2.36125 0.36179 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 3.19095 0.23880 2.87199 2.16537 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 0.43644 2.67100 1.59128 2.51553 48 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 2.23925 2.92103 0.25317 2.76066 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 0.43635 2.67132 1.59129 2.51594 50 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 0.43629 2.67154 1.59130 2.51622 51 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 0.43622 2.67180 1.59131 2.51656 52 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.71774 1.94481 2.36225 0.36132 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 0.43601 2.67253 1.59134 2.51752 54 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 3.19933 0.23788 2.87550 2.16699 55 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 2.72120 1.94511 2.36343 0.36078 56 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 2.24316 2.92595 0.25179 2.76687 57 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 2.50187 3.35075 0.18707 2.92580 58 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 2.43343 2.42787 2.94285 0.25965 59 U - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //