INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-5885 ACC RF03213 DESC mir-5885 microRNA precursor family STATES 199 NODES 44 CLEN 65 W 80 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 6 18:55:08 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/RELEASES/15.0/microrna/updates/RF03213/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 1.854492 CKSUM 2028145956 NULL 0.000 0.000 0.000 0.000 GA 64.00 TC 64.00 NC 62.10 EFP7GF -9.1046 0.71930 ECMLC 0.66046 -4.94790 3.28378 1600000 275626 0.004354 ECMGC 0.47622 -14.76338 -2.50501 1600000 137186 0.002916 ECMLI 0.66329 -3.49701 4.19094 1600000 196691 0.006101 ECMGI 0.52491 -10.17365 0.30192 1600000 97751 0.004092 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 80 100 -6.917 -7.124 -0.054 -5.538 IL 1 1 2 1 4 1 9 84 104 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 9 83 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - u - - - ML 3 2 3 5 3 1 9 80 100 -7.936 -0.021 -6.590 -0.716 0.076 -1.472 0.983 D 4 2 3 5 3 0 3 79 99 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 8 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - a - - - ML 6 5 3 8 3 1 8 79 99 -7.936 -0.021 -6.590 0.996 -1.374 0.066 -0.804 D 7 5 3 8 3 0 2 78 97 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 7 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - u - - - ML 9 8 3 11 3 1 7 78 98 -7.936 -0.021 -6.590 0.255 0.010 -1.014 0.384 D 10 8 3 11 3 0 2 77 96 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 6 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - C - - - ML 12 11 3 14 3 1 6 77 97 -7.936 -0.021 -6.590 -1.672 1.605 -2.493 -1.099 D 13 11 3 14 3 0 1 76 95 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 5 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 5 76 95 -8.328 -0.019 -6.646 1.706 -2.314 -1.951 -1.850 D 16 14 3 17 3 0 1 75 94 -5.620 -0.734 -1.403 IL 17 17 3 17 3 1 4 77 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 65 - g - - MR 18 17 3 20 3 1 5 75 94 -8.328 -0.019 -6.646 0.318 -1.495 0.897 -0.899 D 19 17 3 20 3 0 0 73 93 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 3 76 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 64 - u - - MR 21 20 3 23 3 1 4 74 93 -8.328 -0.019 -6.646 -0.258 -0.044 -0.181 0.391 D 22 20 3 23 3 0 0 72 92 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 3 75 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 63 - a - - MR 24 23 3 26 3 1 4 73 92 -8.328 -0.019 -6.646 0.320 -0.829 -0.024 0.270 D 25 23 3 26 3 0 0 71 91 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 2 74 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 62 - u - - MR 27 26 3 29 3 1 3 72 91 -8.328 -0.019 -6.646 -0.716 0.076 -1.472 0.983 D 28 26 3 29 3 0 0 70 90 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 2 73 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 61 - C - - MR 30 29 3 32 3 1 3 71 90 -8.328 -0.019 -6.646 -1.672 1.605 -2.493 -1.099 D 31 29 3 32 3 0 0 69 89 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 1 72 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 60 - G - - MR 33 32 3 35 5 1 2 70 89 -7.068 -0.040 -6.884 -7.096 -7.988 -1.519 -2.730 1.709 -2.116 D 34 32 3 35 5 0 0 69 88 -5.352 -0.707 -2.978 -4.409 -2.404 IR 35 35 3 35 5 1 1 70 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 6 59 G C - - MP 36 35 3 40 6 2 4 69 88 -9.096 -9.035 -0.021 -7.811 -8.091 -8.486 -4.689 -3.069 -4.784 0.235 -5.159 -4.673 -0.536 -5.023 -4.293 3.625 -4.634 -0.766 -0.923 -4.433 -2.571 -3.661 ML 37 35 3 40 6 1 1 68 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 3 40 6 1 1 67 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 3 40 6 0 0 65 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 1 69 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 1 68 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 7 58 g u - - MP 42 41 6 46 6 2 3 67 86 -9.096 -9.035 -0.021 -7.811 -8.091 -8.486 -3.359 -2.314 -3.494 2.127 -4.122 -4.773 0.157 -3.646 -3.307 1.596 -3.835 2.397 -0.107 -3.934 -1.746 -2.301 ML 43 41 6 46 6 1 1 66 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 1 65 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 0 63 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 1 67 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 1 66 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 8 57 G U - - MP 48 47 6 52 6 2 3 65 84 -9.096 -9.035 -0.021 -7.811 -8.091 -8.486 -3.581 -2.364 -3.745 1.155 -4.432 -5.156 -0.044 -3.773 -3.416 1.405 -3.935 3.045 -0.404 -4.372 -1.986 -2.453 ML 49 47 6 52 6 1 1 64 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 1 63 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 0 61 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 1 65 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 1 64 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 9 56 U A - - MP 54 53 6 58 6 2 3 63 82 -9.096 -9.035 -0.021 -7.811 -8.091 -8.486 -4.134 -3.957 -3.978 -0.256 -2.932 -4.548 1.395 -3.624 -3.983 0.006 -4.360 -1.858 3.300 -4.287 -0.610 -2.813 ML 55 53 6 58 6 1 1 62 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 1 61 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 0 59 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 1 63 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 1 62 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 10 55 a u - - MP 60 59 6 64 6 2 3 61 80 -9.096 -9.035 -0.021 -7.811 -8.091 -8.486 -3.294 -2.363 -3.400 2.650 -3.922 -4.653 0.297 -3.589 -3.288 1.636 -3.832 1.582 0.036 -3.792 -1.590 -2.257 ML 61 59 6 64 6 1 1 60 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 1 59 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 0 57 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 1 61 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 1 60 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 11 54 U A - - MP 66 65 6 70 6 2 2 59 78 -9.096 -9.035 -0.021 -7.811 -8.091 -8.486 -4.134 -3.957 -3.978 -0.256 -2.932 -4.548 1.395 -3.624 -3.983 0.006 -4.360 -1.858 3.300 -4.287 -0.610 -2.813 ML 67 65 6 70 6 1 1 58 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 1 57 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 0 55 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 1 59 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 1 58 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 12 53 a u - - MP 72 71 6 76 6 2 2 57 76 -9.096 -9.035 -0.021 -7.811 -8.091 -8.486 -3.294 -2.363 -3.400 2.650 -3.922 -4.653 0.297 -3.589 -3.288 1.636 -3.832 1.582 0.036 -3.792 -1.590 -2.257 ML 73 71 6 76 6 1 1 56 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 1 55 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 53 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 57 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 56 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 13 52 c g - - MP 78 77 6 82 6 2 2 55 74 -9.096 -9.035 -0.021 -7.811 -8.091 -8.486 -3.385 -2.996 -3.368 0.673 -2.716 -4.070 2.545 -3.251 -3.387 1.973 -3.830 -0.832 1.145 -3.532 -0.363 -2.261 ML 79 77 6 82 6 1 1 54 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 53 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 51 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 55 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 54 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 14 51 G C - - MP 84 83 6 88 6 2 2 53 72 -9.096 -9.035 -0.021 -7.811 -8.091 -8.486 -4.689 -3.069 -4.784 0.235 -5.159 -4.673 -0.536 -5.023 -4.293 3.625 -4.634 -0.766 -0.923 -4.433 -2.571 -3.661 ML 85 83 6 88 6 1 1 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 49 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 53 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 52 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 15 50 u g - - MP 90 89 6 94 6 2 2 51 70 -9.096 -9.035 -0.021 -7.811 -8.091 -8.486 -4.034 -3.952 -3.749 -0.292 -2.524 -4.183 1.761 -3.292 -3.789 -0.090 -4.087 -1.955 0.920 -4.125 2.969 -2.663 ML 91 89 6 94 6 1 1 50 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 48 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 51 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 50 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 16 49 G C - - MP 96 95 6 100 4 2 2 49 68 -6.917 -7.124 -0.054 -5.538 -4.689 -3.069 -4.784 0.235 -5.159 -4.673 -0.536 -5.023 -4.293 3.625 -4.634 -0.766 -0.923 -4.433 -2.571 -3.661 ML 97 95 6 100 4 1 1 50 69 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 1 49 68 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 48 67 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 1 51 70 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 50 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 17 - G - - - ML 102 101 6 104 5 1 1 47 66 -7.068 -0.040 -6.884 -7.096 -7.988 -1.519 -2.730 1.709 -2.116 D 103 101 6 104 5 0 0 45 64 -4.959 -0.803 -4.221 -2.596 -2.508 IL 104 104 3 104 5 1 1 47 66 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 18 48 U A - - MP 105 104 3 109 6 2 2 45 65 -9.096 -9.035 -0.021 -7.811 -8.091 -8.486 -4.134 -3.957 -3.978 -0.256 -2.932 -4.548 1.395 -3.624 -3.983 0.006 -4.360 -1.858 3.300 -4.287 -0.610 -2.813 ML 106 104 3 109 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 3 109 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 3 109 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 19 47 G C - - MP 111 110 6 115 6 2 2 43 63 -9.096 -9.035 -0.021 -7.811 -8.091 -8.486 -4.689 -3.069 -4.784 0.235 -5.159 -4.673 -0.536 -5.023 -4.293 3.625 -4.634 -0.766 -0.923 -4.433 -2.571 -3.661 ML 112 110 6 115 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 20 46 g u - - MP 117 116 6 121 6 2 2 41 61 -9.096 -9.035 -0.021 -7.811 -8.091 -8.486 -2.865 -2.063 -3.064 1.175 -3.283 -3.912 0.708 -3.219 -2.903 1.513 -3.355 2.159 0.402 -3.289 -1.107 0.923 ML 118 116 6 121 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 21 45 U A - - MP 123 122 6 127 6 2 2 39 59 -9.096 -9.035 -0.021 -7.811 -8.091 -8.486 -4.134 -3.957 -3.978 -0.256 -2.932 -4.548 1.395 -3.624 -3.983 0.006 -4.360 -1.858 3.300 -4.287 -0.610 -2.813 ML 124 122 6 127 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 22 44 C G - - MP 129 128 6 133 6 2 2 37 57 -9.096 -9.035 -0.021 -7.811 -8.091 -8.486 -4.496 -4.397 -4.195 -0.634 -2.924 -4.613 3.534 -3.729 -4.242 -0.386 -4.509 -2.343 0.595 -4.568 -0.629 -3.084 ML 130 128 6 133 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 23 43 U A - - MP 135 134 6 139 4 2 2 35 55 -6.917 -7.124 -0.054 -5.538 -4.134 -3.957 -3.978 -0.256 -2.932 -4.548 1.395 -3.624 -3.983 0.006 -4.360 -1.858 3.300 -4.287 -0.610 -2.813 ML 136 134 6 139 4 1 1 36 55 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 4 1 1 36 55 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 138 134 6 139 4 0 0 35 54 -4.568 -4.250 -2.265 -0.520 IL 139 139 5 139 4 1 1 37 57 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 140 140 6 140 3 1 1 36 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 24 - G - - - ML 141 140 6 143 3 1 1 33 52 -8.328 -0.019 -6.646 -1.519 -2.730 1.709 -2.116 D 142 140 6 143 3 0 0 32 50 -5.620 -0.734 -1.403 IL 143 143 3 143 3 1 1 34 52 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 42 - G - - MR 144 143 3 146 5 1 1 32 51 -7.068 -0.040 -6.884 -7.096 -7.988 -1.519 -2.730 1.709 -2.116 D 145 143 3 146 5 0 0 30 49 -5.352 -0.707 -2.978 -4.409 -2.404 IR 146 146 3 146 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 25 41 G U - - MP 147 146 3 151 6 2 2 31 50 -9.096 -9.035 -0.021 -7.811 -8.091 -8.486 -3.581 -2.364 -3.745 1.155 -4.432 -5.156 -0.044 -3.773 -3.416 1.405 -3.935 3.045 -0.404 -4.372 -1.986 -2.453 ML 148 146 3 151 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 3 151 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 3 151 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 26 40 U A - - MP 153 152 6 157 6 2 2 29 48 -9.096 -9.035 -0.021 -7.811 -8.091 -8.486 -4.134 -3.957 -3.978 -0.256 -2.932 -4.548 1.395 -3.624 -3.983 0.006 -4.360 -1.858 3.300 -4.287 -0.610 -2.813 ML 154 152 6 157 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 6 157 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 27 39 A U - - MP 159 158 6 163 6 2 2 27 46 -9.096 -9.035 -0.021 -7.811 -8.091 -8.486 -3.747 -2.790 -3.769 3.302 -4.085 -5.143 0.212 -3.814 -3.662 1.127 -4.208 -0.273 -0.205 -4.338 -1.729 -2.605 ML 160 158 6 163 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 6 163 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 28 38 A U - - MP 165 164 6 169 6 2 2 25 44 -9.096 -9.035 -0.021 -7.811 -8.091 -8.486 -3.747 -2.790 -3.769 3.302 -4.085 -5.143 0.212 -3.814 -3.662 1.127 -4.208 -0.273 -0.205 -4.338 -1.729 -2.605 ML 166 164 6 169 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 168 164 6 169 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 169 169 5 169 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 170 170 6 170 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 29 37 G C - - MP 171 170 6 175 6 2 2 23 42 -9.096 -9.035 -0.021 -7.811 -8.091 -8.486 -4.689 -3.069 -4.784 0.235 -5.159 -4.673 -0.536 -5.023 -4.293 3.625 -4.634 -0.766 -0.923 -4.433 -2.571 -3.661 ML 172 170 6 175 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 173 170 6 175 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 174 170 6 175 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 175 175 5 175 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 176 176 6 176 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 30 36 c g - - MP 177 176 6 181 4 2 2 21 40 -6.917 -7.124 -0.054 -5.538 -3.700 -3.674 -3.549 0.018 -2.456 -4.080 2.900 -3.186 -3.573 0.241 -3.941 -1.718 1.155 -3.827 1.495 -2.454 ML 178 176 6 181 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 179 176 6 181 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 180 176 6 181 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 181 181 5 181 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 182 182 6 182 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 31 - a - - - ML 183 182 6 185 3 1 1 18 36 -7.936 -0.021 -6.590 0.996 -1.374 0.066 -0.804 D 184 182 6 185 3 0 0 17 36 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 32 - U - - - ML 186 185 3 188 3 1 1 16 35 -7.936 -0.021 -6.590 -1.433 -1.438 -2.164 1.603 D 187 185 3 188 3 0 0 16 34 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 33 - G - - - ML 189 188 3 191 3 1 1 15 33 -7.936 -0.021 -6.590 -1.519 -2.730 1.709 -2.116 D 190 188 3 191 3 0 0 15 33 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 34 - a - - - ML 192 191 3 194 3 1 1 13 31 -7.936 -0.021 -6.590 0.874 -0.938 -1.054 0.219 D 193 191 3 194 3 0 0 13 32 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 35 - C - - - ML 195 194 3 197 2 1 1 1 1 * 0.000 -1.672 1.605 -2.493 -1.099 D 196 194 3 197 2 0 0 0 0 * 0.000 IL 197 197 3 197 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 43 ] - - - - - - E 198 197 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-5885 ACC RF03213 DESC mir-5885 microRNA precursor family LENG 65 MAXL 149 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 6 18:55:08 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/RELEASES/15.0/microrna/updates/RF03213/CM NSEQ 3 EFFN 2.762695 CKSUM 2028145956 STATS LOCAL MSV -8.2383 0.71930 STATS LOCAL VITERBI -8.9064 0.71930 STATS LOCAL FORWARD -3.8496 0.71930 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.53005 1.55146 1.20816 1.29905 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 2.07654 1.29933 2.61654 0.63702 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 0.62602 2.54697 1.30137 2.16450 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 1.20377 1.33797 2.18626 1.12323 3 u - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 3.08076 0.15975 3.65565 2.57871 4 C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 0.12580 3.43288 3.13837 3.15691 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 2.70992 3.43375 0.14289 3.37129 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 1.14102 2.96988 0.56819 2.77020 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 2.01036 3.09464 0.26346 2.94921 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 3.19552 2.07370 2.96960 0.24589 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 0.72200 2.84060 0.95428 2.64873 10 a - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 3.19357 2.07355 2.96867 0.24607 11 U - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 0.72209 2.83998 0.95440 2.64798 12 a - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 2.25327 0.86529 1.24321 1.68438 13 c - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 2.70814 3.43147 0.14324 3.36817 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 3.10865 1.67363 2.92537 0.33669 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.70758 3.43076 0.14335 3.36719 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 2.89665 3.79992 0.11859 3.37407 17 G - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 3.19793 2.07388 2.97074 0.24566 18 U - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 2.71109 3.43526 0.14267 3.37336 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 1.92974 2.58149 0.62927 1.40172 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 3.19408 2.07359 2.96892 0.24602 21 U - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 3.39305 0.19681 3.19268 2.26348 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 3.19224 2.07345 2.96804 0.24620 23 U - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 2.89665 3.79992 0.11859 3.37407 24 G - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 2.01011 3.09407 0.26359 2.94850 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 3.19664 2.07378 2.97013 0.24578 26 U - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 0.27017 3.01434 2.00555 2.93579 27 A - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 0.27024 3.01400 2.00547 2.93531 28 A - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 2.71004 3.43391 0.14287 3.37150 29 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.80489 0.63659 2.59047 1.09241 30 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 0.62602 2.54697 1.30137 2.16450 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 2.79309 2.72626 3.31723 0.17787 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 2.89665 3.79992 0.11859 3.37407 33 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 0.71850 2.15530 2.24496 1.23541 34 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 3.08076 0.15975 3.65565 2.57871 35 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 2.01780 2.75278 0.31932 2.56834 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 3.56550 0.17000 3.27334 2.40600 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 3.16110 2.32252 2.82444 0.22283 38 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 3.16384 2.32291 2.82556 0.22255 39 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 0.27811 3.16192 1.91100 2.94680 40 A - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 3.16820 2.06946 2.89480 0.25314 41 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 2.89665 3.79992 0.11859 3.37407 42 G - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 0.27927 3.15483 1.91003 2.93858 43 A - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 2.54107 3.35815 0.16994 3.15351 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 0.27930 3.15461 1.91000 2.93832 45 A - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 46 2.66509 1.89288 2.38474 0.37447 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 47 3.54850 0.17128 3.26549 2.40278 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 48 0.28052 3.14726 1.90898 2.92982 48 A - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 49 3.55608 0.17071 3.26900 2.40422 49 C - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 50 2.23531 3.10519 0.23535 2.84853 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 51 3.55797 0.17057 3.26987 2.40457 51 C - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 52 1.92818 1.33228 0.78468 2.00658 52 g - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 53 2.86009 1.81860 2.63597 0.34413 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 54 0.27900 3.15649 1.91025 2.94050 54 A - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 55 2.86210 1.81868 2.63686 0.34386 55 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 56 0.27868 3.15843 1.91052 2.94275 56 A - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 57 3.15912 2.06875 2.89076 0.25404 57 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 58 2.98361 1.88211 2.76589 0.30897 58 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 59 3.58704 0.16842 3.28318 2.41001 59 C - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 60 2.89665 3.79992 0.11859 3.37407 60 G - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 61 3.08076 0.15975 3.65565 2.57871 61 C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 62 2.07654 1.29933 2.61654 0.63702 62 U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 63 1.16030 2.04475 1.36991 1.19381 63 a - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 64 1.64869 1.38012 1.47708 1.11521 64 u - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 65 1.17045 2.64530 0.66766 2.24544 65 G - - : 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * //