INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-6790 ACC RF03196 DESC mir-6790 microRNA precursor family STATES 193 NODES 42 CLEN 63 W 79 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 8 13:33:52 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03196/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.386719 CKSUM 3460309742 NULL 0.000 0.000 0.000 0.000 GA 78.00 TC 78.30 NC 76.70 EFP7GF -7.0604 0.72515 ECMLC 0.65214 -5.28483 3.58481 1600000 390151 0.003076 ECMGC 0.40780 -16.96198 -2.30105 1600000 157986 0.002532 ECMLI 0.63107 -4.07157 4.77194 1600000 318375 0.003769 ECMGI 0.42961 -11.79572 0.78317 1600000 88922 0.004498 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 79 99 -6.644 -7.890 -0.095 -4.343 IL 1 1 2 1 4 1 12 80 100 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 14 81 101 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 63 - C - - MR 3 2 3 5 5 1 15 79 99 -6.901 -0.045 -6.716 -6.929 -7.820 -1.218 1.446 -2.017 -0.740 D 4 2 3 5 5 0 7 78 97 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 1 11 79 99 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 62 G C - - MP 6 5 3 10 6 2 16 78 98 -9.020 -8.959 -0.022 -7.736 -8.016 -8.411 -4.311 -2.891 -4.381 0.478 -4.626 -4.518 -0.094 -4.585 -4.032 3.515 -4.403 -0.579 -0.493 -4.182 -2.110 -3.264 ML 7 5 3 10 6 1 9 76 96 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 1 9 76 96 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 0 4 74 94 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 1 11 78 97 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 1 11 77 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 61 U A - - MP 12 11 6 16 6 2 15 76 96 -9.020 -8.959 -0.022 -7.736 -8.016 -8.411 -3.758 -3.563 -3.641 0.107 -2.682 -4.243 1.634 -3.345 -3.651 0.439 -4.045 -1.474 3.071 -3.922 -0.369 -2.514 ML 13 11 6 16 6 1 8 74 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 1 8 74 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 0 3 72 92 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 1 10 76 95 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 1 10 75 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 60 G C - - MP 18 17 6 22 6 2 14 74 94 -9.020 -8.959 -0.022 -7.736 -8.016 -8.411 -4.311 -2.891 -4.381 0.478 -4.626 -4.518 -0.094 -4.585 -4.032 3.515 -4.403 -0.579 -0.493 -4.182 -2.110 -3.264 ML 19 17 6 22 6 1 8 72 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 1 7 72 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 0 3 70 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 1 10 74 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 1 10 73 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 59 A U - - MP 24 23 6 28 6 2 13 72 92 -9.020 -8.959 -0.022 -7.736 -8.016 -8.411 -3.450 -2.575 -3.490 3.051 -3.662 -4.700 0.618 -3.551 -3.400 1.450 -3.930 -0.113 0.198 -3.942 -1.325 -2.347 ML 25 23 6 28 6 1 7 71 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 1 7 70 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 0 3 68 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 1 9 72 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 1 9 71 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 58 G C - - MP 30 29 6 34 6 2 11 70 90 -9.020 -8.959 -0.022 -7.736 -8.016 -8.411 -4.311 -2.891 -4.381 0.478 -4.626 -4.518 -0.094 -4.585 -4.032 3.515 -4.403 -0.579 -0.493 -4.182 -2.110 -3.264 ML 31 29 6 34 6 1 7 69 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 1 6 68 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 0 2 66 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 8 70 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 8 69 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 57 U A - - MP 36 35 6 40 6 2 9 68 88 -9.020 -8.959 -0.022 -7.736 -8.016 -8.411 -3.758 -3.563 -3.641 0.107 -2.682 -4.243 1.634 -3.345 -3.651 0.439 -4.045 -1.474 3.071 -3.922 -0.369 -2.514 ML 37 35 6 40 6 1 6 67 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 1 4 67 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 0 2 65 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 7 68 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 7 67 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 56 G C - - MP 42 41 6 46 4 2 8 66 86 -6.706 -6.913 -0.063 -5.328 -4.311 -2.891 -4.381 0.478 -4.626 -4.518 -0.094 -4.585 -4.032 3.515 -4.403 -0.579 -0.493 -4.182 -2.110 -3.264 ML 43 41 6 46 4 1 5 66 86 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 1 3 66 86 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 0 2 65 85 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 1 6 68 88 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 1 6 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - - - ML 48 47 6 50 3 1 6 64 83 -8.148 -0.022 -6.465 -1.087 -1.156 -1.796 1.482 D 49 47 6 50 3 0 1 62 82 -5.620 -0.734 -1.403 IL 50 50 3 50 3 1 5 64 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 55 - U - - MR 51 50 3 53 5 1 6 63 82 -6.901 -0.045 -6.716 -6.929 -7.820 -1.087 -1.156 -1.796 1.482 D 52 50 3 53 5 0 0 61 81 -5.352 -0.707 -2.978 -4.409 -2.404 IR 53 53 3 53 5 1 3 63 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 54 G C - - MP 54 53 3 58 6 2 6 62 81 -9.020 -8.959 -0.022 -7.736 -8.016 -8.411 -4.311 -2.891 -4.381 0.478 -4.626 -4.518 -0.094 -4.585 -4.032 3.515 -4.403 -0.579 -0.493 -4.182 -2.110 -3.264 ML 55 53 3 58 6 1 2 60 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 3 58 6 1 2 60 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 3 58 6 0 0 58 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 3 61 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 3 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 10 53 G C - - MP 60 59 6 64 6 2 5 60 79 -9.020 -8.959 -0.022 -7.736 -8.016 -8.411 -4.311 -2.891 -4.381 0.478 -4.626 -4.518 -0.094 -4.585 -4.032 3.515 -4.403 -0.579 -0.493 -4.182 -2.110 -3.264 ML 61 59 6 64 6 1 2 59 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 2 59 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 0 57 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 2 59 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 2 59 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 11 52 a u - - MP 66 65 6 70 4 2 3 58 77 -6.706 -6.913 -0.063 -5.328 -2.747 1.044 -2.883 2.100 -3.117 -3.828 0.813 -3.123 -2.843 1.859 -3.351 0.112 0.549 -3.100 -0.971 -1.876 ML 67 65 6 70 4 1 1 58 78 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 4 1 1 57 77 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 69 65 6 70 4 0 0 56 76 -4.568 -4.250 -2.265 -0.520 IL 70 70 5 70 4 1 2 59 79 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 71 71 6 71 3 1 2 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 12 - U - - - ML 72 71 6 74 3 1 2 55 74 -8.148 -0.022 -6.465 -1.087 -1.156 -1.796 1.482 D 73 71 6 74 3 0 0 54 73 -5.620 -0.734 -1.403 IL 74 74 3 74 3 1 1 56 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 51 - C - - MR 75 74 3 77 5 1 1 54 73 -6.901 -0.045 -6.716 -6.929 -7.820 -1.218 1.446 -2.017 -0.740 D 76 74 3 77 5 0 0 53 72 -5.352 -0.707 -2.978 -4.409 -2.404 IR 77 77 3 77 5 1 1 54 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 50 U A - - MP 78 77 3 82 6 2 3 53 72 -9.020 -8.959 -0.022 -7.736 -8.016 -8.411 -3.758 -3.563 -3.641 0.107 -2.682 -4.243 1.634 -3.345 -3.651 0.439 -4.045 -1.474 3.071 -3.922 -0.369 -2.514 ML 79 77 3 82 6 1 1 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 3 82 6 1 1 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 3 82 6 0 0 49 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 53 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 52 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 49 u a - - MP 84 83 6 88 6 2 2 51 70 -9.020 -8.959 -0.022 -7.736 -8.016 -8.411 -3.220 -3.176 -3.174 0.412 -2.316 -3.807 1.944 -2.968 -3.202 0.685 -3.628 -1.257 2.199 -3.401 1.567 -2.130 ML 85 83 6 88 6 1 1 50 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 48 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 51 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 50 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 48 G C - - MP 90 89 6 94 4 2 2 49 68 -6.706 -6.913 -0.063 -5.328 -4.311 -2.891 -4.381 0.478 -4.626 -4.518 -0.094 -4.585 -4.032 3.515 -4.403 -0.579 -0.493 -4.182 -2.110 -3.264 ML 91 89 6 94 4 1 1 49 69 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 4 1 1 49 68 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 93 89 6 94 4 0 0 48 67 -4.568 -4.250 -2.265 -0.520 IL 94 94 5 94 4 1 1 51 70 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 95 95 6 95 3 1 1 50 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 16 - G - - - ML 96 95 6 98 3 1 1 46 66 -8.148 -0.022 -6.465 -1.106 -2.245 1.585 -1.629 D 97 95 6 98 3 0 0 45 64 -5.620 -0.734 -1.403 IL 98 98 3 98 3 1 1 47 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 47 - G - - MR 99 98 3 101 5 1 1 45 65 -6.901 -0.045 -6.716 -6.929 -7.820 -1.106 -2.245 1.585 -1.629 D 100 98 3 101 5 0 0 44 63 -5.352 -0.707 -2.978 -4.409 -2.404 IR 101 101 3 101 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 17 46 C G - - MP 102 101 3 106 6 2 2 44 63 -9.020 -8.959 -0.022 -7.736 -8.016 -8.411 -4.112 -3.973 -3.872 -0.251 -2.695 -4.340 3.388 -3.460 -3.910 0.064 -4.215 -1.917 0.858 -4.208 -0.395 -2.766 ML 103 101 3 106 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 3 106 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 3 106 6 0 0 40 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 18 45 G C - - MP 108 107 6 112 6 2 2 42 61 -9.020 -8.959 -0.022 -7.736 -8.016 -8.411 -4.311 -2.891 -4.381 0.478 -4.626 -4.518 -0.094 -4.585 -4.032 3.515 -4.403 -0.579 -0.493 -4.182 -2.110 -3.264 ML 109 107 6 112 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 38 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 19 44 g u - - MP 114 113 6 118 6 2 2 40 59 -9.020 -8.959 -0.022 -7.736 -8.016 -8.411 -3.346 -2.231 -3.487 1.284 -3.980 -4.721 0.357 -3.551 -3.231 1.720 -3.740 2.726 -0.004 -3.976 -1.581 -2.252 ML 115 113 6 118 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 36 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 20 43 G C - - MP 120 119 6 124 6 2 2 38 57 -9.020 -8.959 -0.022 -7.736 -8.016 -8.411 -4.311 -2.891 -4.381 0.478 -4.626 -4.518 -0.094 -4.585 -4.032 3.515 -4.403 -0.579 -0.493 -4.182 -2.110 -3.264 ML 121 119 6 124 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 34 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 21 42 G C - - MP 126 125 6 130 6 2 2 36 55 -9.020 -8.959 -0.022 -7.736 -8.016 -8.411 -4.311 -2.891 -4.381 0.478 -4.626 -4.518 -0.094 -4.585 -4.032 3.515 -4.403 -0.579 -0.493 -4.182 -2.110 -3.264 ML 127 125 6 130 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 22 41 U A - - MP 132 131 6 136 6 2 2 34 53 -9.020 -8.959 -0.022 -7.736 -8.016 -8.411 -3.758 -3.563 -3.641 0.107 -2.682 -4.243 1.634 -3.345 -3.651 0.439 -4.045 -1.474 3.071 -3.922 -0.369 -2.514 ML 133 131 6 136 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 23 40 u g - - MP 138 137 6 142 4 2 2 32 51 -6.644 -7.890 -0.095 -4.343 -3.655 -3.555 -3.455 0.066 -2.359 -3.954 1.913 -3.086 -3.492 0.338 -3.830 -1.569 1.132 -3.779 2.664 -2.386 ML 139 137 6 142 4 1 1 32 51 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 4 1 1 31 51 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 141 137 6 142 4 0 0 30 49 -12.737 -14.007 -2.036 -0.404 IL 142 142 5 142 4 1 1 32 51 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 143 143 6 143 3 1 1 32 51 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 39 - C - - MR 144 143 6 146 5 1 1 30 49 -6.901 -0.045 -6.716 -6.929 -7.820 -1.218 1.446 -2.017 -0.740 D 145 143 6 146 5 0 0 29 48 -5.352 -0.707 -2.978 -4.409 -2.404 IR 146 146 3 146 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 24 38 C G - - MP 147 146 3 151 6 2 2 29 48 -9.020 -8.959 -0.022 -7.736 -8.016 -8.411 -4.112 -3.973 -3.872 -0.251 -2.695 -4.340 3.388 -3.460 -3.910 0.064 -4.215 -1.917 0.858 -4.208 -0.395 -2.766 ML 148 146 3 151 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 3 151 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 3 151 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 25 37 c g - - MP 153 152 6 157 6 2 2 27 46 -9.020 -8.959 -0.022 -7.736 -8.016 -8.411 -2.739 -2.621 -2.815 0.615 -2.289 -3.483 2.491 -2.817 -2.827 0.911 0.839 -0.850 1.194 -2.988 -0.145 -1.876 ML 154 152 6 157 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 6 157 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 26 36 G C - - MP 159 158 6 163 4 2 2 25 44 -6.706 -6.913 -0.063 -5.328 -4.311 -2.891 -4.381 0.478 -4.626 -4.518 -0.094 -4.585 -4.032 3.515 -4.403 -0.579 -0.493 -4.182 -2.110 -3.264 ML 160 158 6 163 4 1 1 26 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 4 1 1 26 45 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 162 158 6 163 4 0 0 24 44 -4.568 -4.250 -2.265 -0.520 IL 163 163 5 163 4 1 1 27 47 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 164 164 6 164 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 27 - G - - - ML 165 164 6 167 3 1 1 23 41 -7.742 -0.024 -6.396 -1.106 -2.245 1.585 -1.629 D 166 164 6 167 3 0 0 21 40 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 28 - G - - - ML 168 167 3 170 3 1 1 21 40 -7.742 -0.024 -6.396 -1.106 -2.245 1.585 -1.629 D 169 167 3 170 3 0 0 20 39 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 29 - G - - - ML 171 170 3 173 3 1 1 20 39 -7.742 -0.024 -6.396 -1.106 -2.245 1.585 -1.629 D 172 170 3 173 3 0 0 19 38 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 30 - U - - - ML 174 173 3 176 3 1 1 19 38 -7.742 -0.024 -6.396 -1.087 -1.156 -1.796 1.482 D 175 173 3 176 3 0 0 18 37 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 31 - u - - - ML 177 176 3 179 3 1 1 18 36 -7.742 -0.024 -6.396 -0.533 0.374 -1.289 0.682 D 178 176 3 179 3 0 0 17 36 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 32 - C - - - ML 180 179 3 182 3 1 1 16 35 -7.742 -0.024 -6.396 -1.218 1.446 -2.017 -0.740 D 181 179 3 182 3 0 0 16 34 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 33 - C - - - ML 183 182 3 185 3 1 1 15 33 -7.742 -0.024 -6.396 -1.218 1.446 -2.017 -0.740 D 184 182 3 185 3 0 0 15 33 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 34 - G - - - ML 186 185 3 188 3 1 1 13 32 -7.742 -0.024 -6.396 -1.106 -2.245 1.585 -1.629 D 187 185 3 188 3 0 0 13 32 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 35 - A - - - ML 189 188 3 191 2 1 1 1 1 * 0.000 1.603 -1.929 -1.605 -1.431 D 190 188 3 191 2 0 0 0 0 * 0.000 IL 191 191 3 191 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 41 ] - - - - - - E 192 191 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-6790 ACC RF03196 DESC mir-6790 microRNA precursor family LENG 63 MAXL 151 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 8 13:33:52 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03196/CM NSEQ 2 EFFN 1.683594 CKSUM 3460309742 STATS LOCAL MSV -8.1615 0.72515 STATS LOCAL VITERBI -9.3165 0.72515 STATS LOCAL FORWARD -2.9334 0.72515 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.84156 1.23825 1.09958 1.52083 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.35894 2.87019 0.23727 2.81322 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.61053 1.64945 2.31961 0.45250 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.36565 2.87680 0.23527 2.82282 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 0.51300 2.38126 1.55430 2.32759 4 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.36672 2.87786 0.23495 2.82436 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.61489 1.64945 2.32119 0.45175 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.36662 2.87776 0.23498 2.82421 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.29380 2.31310 2.79557 0.30234 8 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.36495 2.87611 0.23548 2.82181 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.36711 2.87824 0.23483 2.82491 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.77159 2.15916 1.24369 2.01005 11 a - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.29380 2.31310 2.79557 0.30234 12 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.61315 1.64945 2.32056 0.45205 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.32075 1.37141 2.06790 0.65085 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.36804 2.87915 0.23456 2.82624 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.33855 3.16095 0.22783 2.73506 16 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.85298 0.34151 2.58390 1.85691 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.36743 2.87856 0.23474 2.82537 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 1.77844 2.54650 0.40694 2.44121 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.36807 2.87918 0.23455 2.82628 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.36786 2.87897 0.23462 2.82598 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.61607 1.64944 2.32162 0.45155 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.62544 1.42081 2.37134 0.52303 23 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.83006 0.34521 2.57435 1.85334 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.15467 0.95590 1.26244 1.52956 25 c - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.36359 2.87477 0.23588 2.81987 26 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.33855 3.16095 0.22783 2.73506 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.33855 3.16095 0.22783 2.73506 28 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.33855 3.16095 0.22783 2.73506 29 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.29380 2.31310 2.79557 0.30234 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 1.82253 1.09199 2.35503 0.89662 31 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.43226 0.30836 2.99720 2.05899 32 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.43226 0.30836 2.99720 2.05899 33 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.33855 3.16095 0.22783 2.73506 34 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.22629 2.89556 2.65398 2.56559 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 3.04013 0.27491 2.70787 2.07262 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 1.78147 2.06496 0.57845 1.93780 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.13122 2.75174 0.29541 2.61364 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.43226 0.30836 2.99720 2.05899 39 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 1.91587 2.54278 0.38380 2.37652 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.51412 2.49890 1.48607 2.36939 41 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 3.04353 0.27447 2.70922 2.07329 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 3.04511 0.27427 2.70984 2.07359 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.66262 1.62413 2.35328 0.44927 44 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 3.04940 0.27371 2.71154 2.07442 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.13435 2.75539 0.29413 2.61846 46 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.33855 3.16095 0.22783 2.73506 47 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 3.04703 0.27402 2.71060 2.07396 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 1.12540 2.23192 0.80888 2.09721 49 g - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 0.51332 2.50121 1.48602 2.37260 50 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.43226 0.30836 2.99720 2.05899 51 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.23493 0.98242 1.96391 0.97210 52 u - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 3.04902 0.27376 2.71139 2.07435 53 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 3.05181 0.27340 2.71249 2.07489 54 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.29380 2.31310 2.79557 0.30234 55 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 3.03951 0.27500 2.70762 2.07250 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 0.51428 2.49843 1.48608 2.36873 57 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 3.04105 0.27479 2.70823 2.07280 58 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 2.55930 1.81023 2.19727 0.43399 59 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 3.04333 0.27450 2.70914 2.07325 60 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 0.51391 2.49950 1.48606 2.37022 61 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 62 3.04663 0.27407 2.71045 2.07389 62 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 63 2.43226 0.30836 2.99720 2.05899 63 C - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //