INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-3193 ACC RF03185 DESC mir-3193 microRNA precursor family STATES 169 NODES 35 CLEN 55 W 71 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 03:57:48 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03185/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.597656 CKSUM 702379683 NULL 0.000 0.000 0.000 0.000 GA 55.00 TC 55.20 NC 50.90 EFP7GF -6.2288 0.72816 ECMLC 0.64164 -5.12115 3.93758 1600000 401330 0.002990 ECMGC 0.43043 -16.55519 -2.48333 1600000 170826 0.002342 ECMLI 0.62810 -3.94153 4.94486 1600000 318587 0.003767 ECMGI 0.45720 -12.12464 0.16894 1600000 110430 0.003622 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 71 90 -9.055 -8.994 -0.022 -7.770 -8.050 -8.445 IL 1 1 2 1 6 1 8 72 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 9 72 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 55 U A - - MP 3 2 3 7 6 2 13 71 90 -9.055 -8.994 -0.022 -7.770 -8.050 -8.445 -3.923 -3.738 -3.789 -0.053 -2.791 -4.378 1.530 -3.467 -3.797 0.245 -4.184 -1.645 3.183 -4.083 -0.474 -2.647 ML 4 2 3 7 6 1 6 69 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 6 69 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 2 67 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 8 70 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 8 70 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 54 C G - - MP 9 8 6 13 6 2 12 69 88 -9.055 -8.994 -0.022 -7.770 -8.050 -8.445 -4.286 -4.167 -4.019 -0.425 -2.798 -4.465 3.460 -3.581 -4.061 -0.143 -4.349 -2.111 0.741 -4.372 -0.499 -2.910 ML 10 8 6 13 6 1 6 67 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 5 67 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 1 65 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 7 68 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 8 68 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 53 C G - - MP 15 14 6 19 6 2 11 67 86 -9.055 -8.994 -0.022 -7.770 -8.050 -8.445 -4.286 -4.167 -4.019 -0.425 -2.798 -4.465 3.460 -3.581 -4.061 -0.143 -4.349 -2.111 0.741 -4.372 -0.499 -2.910 ML 16 14 6 19 6 1 5 65 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 5 65 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 1 63 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 7 66 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 7 66 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 52 U A - - MP 21 20 6 25 6 2 9 65 84 -9.055 -8.994 -0.022 -7.770 -8.050 -8.445 -3.923 -3.738 -3.789 -0.053 -2.791 -4.378 1.530 -3.467 -3.797 0.245 -4.184 -1.645 3.183 -4.083 -0.474 -2.647 ML 22 20 6 25 6 1 5 63 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 4 63 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 1 61 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 6 64 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 6 64 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 51 G C - - MP 27 26 6 31 6 2 8 63 82 -9.055 -8.994 -0.022 -7.770 -8.050 -8.445 -4.487 -2.974 -4.566 0.367 -4.874 -4.592 -0.301 -4.788 -4.157 3.571 -4.513 -0.665 -0.694 -4.300 -2.325 -3.447 ML 28 26 6 31 6 1 4 62 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 3 62 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 1 60 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 5 62 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 5 62 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 50 C G - - MP 33 32 6 37 4 2 6 61 80 -6.805 -7.012 -0.059 -5.426 -4.286 -4.167 -4.019 -0.425 -2.798 -4.465 3.460 -3.581 -4.061 -0.143 -4.349 -2.111 0.741 -4.372 -0.499 -2.910 ML 34 32 6 37 4 1 3 61 81 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 4 1 2 60 80 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 36 32 6 37 4 0 0 59 79 -4.568 -4.250 -2.265 -0.520 IL 37 37 5 37 4 1 4 62 82 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 38 38 6 38 3 1 4 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 39 38 6 41 3 1 4 58 77 -8.232 -0.020 -6.549 -1.298 -2.472 1.649 -1.857 D 40 38 6 41 3 0 0 57 76 -5.620 -0.734 -1.403 IL 41 41 3 41 3 1 3 59 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 49 - A - - MR 42 41 3 44 5 1 4 57 76 -6.979 -0.042 -6.794 -7.006 -7.898 1.655 -2.107 -1.766 -1.625 D 43 41 3 44 5 0 0 56 75 -5.352 -0.707 -2.978 -4.409 -2.404 IR 44 44 3 44 5 1 2 57 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 8 48 u g - - MP 45 44 3 49 6 2 5 56 75 -9.055 -8.994 -0.022 -7.770 -8.050 -8.445 -3.826 -3.735 -3.589 -0.097 -2.432 -4.058 1.846 -3.179 -3.627 0.143 -3.947 -1.745 1.037 -3.936 2.816 -2.512 ML 46 44 3 49 6 1 1 55 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 3 49 6 1 1 55 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 3 49 6 0 0 52 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 2 56 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 2 55 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 9 47 A U - - MP 51 50 6 55 6 2 5 54 73 -9.055 -8.994 -0.022 -7.770 -8.050 -8.445 -3.581 -2.668 -3.613 3.175 -3.848 -4.894 0.438 -3.668 -3.515 1.307 -4.052 -0.181 0.020 -4.116 -1.504 -2.461 ML 52 50 6 55 6 1 1 53 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 1 53 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 50 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 54 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 1 53 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 10 46 G C - - MP 57 56 6 61 6 2 5 52 71 -9.055 -8.994 -0.022 -7.770 -8.050 -8.445 -4.487 -2.974 -4.566 0.367 -4.874 -4.592 -0.301 -4.788 -4.157 3.571 -4.513 -0.665 -0.694 -4.300 -2.325 -3.447 ML 58 56 6 61 6 1 1 51 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 51 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 49 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 52 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 51 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 11 45 G C - - MP 63 62 6 67 6 2 4 50 69 -9.055 -8.994 -0.022 -7.770 -8.050 -8.445 -4.487 -2.974 -4.566 0.367 -4.874 -4.592 -0.301 -4.788 -4.157 3.571 -4.513 -0.665 -0.694 -4.300 -2.325 -3.447 ML 64 62 6 67 6 1 1 49 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 49 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 47 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 50 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 50 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 12 44 A U - - MP 69 68 6 73 4 2 2 48 67 -6.805 -7.012 -0.059 -5.426 -3.581 -2.668 -3.613 3.175 -3.848 -4.894 0.438 -3.668 -3.515 1.307 -4.052 -0.181 0.020 -4.116 -1.504 -2.461 ML 70 68 6 73 4 1 1 49 68 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 4 1 1 48 68 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 72 68 6 73 4 0 0 47 67 -4.568 -4.250 -2.265 -0.520 IL 73 73 5 73 4 1 1 50 69 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 74 74 6 74 3 1 1 49 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 13 - U - - - ML 75 74 6 77 3 1 1 46 65 -8.232 -0.020 -6.549 -1.246 -1.285 -1.966 1.542 D 76 74 6 77 3 0 0 44 63 -5.620 -0.734 -1.403 IL 77 77 3 77 3 1 1 46 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 43 - C - - MR 78 77 3 80 5 1 1 45 64 -6.979 -0.042 -6.794 -7.006 -7.898 -1.426 1.527 -2.237 -0.905 D 79 77 3 80 5 0 0 43 62 -5.352 -0.707 -2.978 -4.409 -2.404 IR 80 80 3 80 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 14 42 C G - - MP 81 80 3 85 6 2 2 44 63 -9.055 -8.994 -0.022 -7.770 -8.050 -8.445 -4.286 -4.167 -4.019 -0.425 -2.798 -4.465 3.460 -3.581 -4.061 -0.143 -4.349 -2.111 0.741 -4.372 -0.499 -2.910 ML 82 80 3 85 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 3 85 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 3 85 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 15 41 U A - - MP 87 86 6 91 6 2 2 42 61 -9.055 -8.994 -0.022 -7.770 -8.050 -8.445 -3.923 -3.738 -3.789 -0.053 -2.791 -4.378 1.530 -3.467 -3.797 0.245 -4.184 -1.645 3.183 -4.083 -0.474 -2.647 ML 88 86 6 91 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 16 40 G C - - MP 93 92 6 97 4 2 2 40 59 -6.805 -7.012 -0.059 -5.426 -4.487 -2.974 -4.566 0.367 -4.874 -4.592 -0.301 -4.788 -4.157 3.571 -4.513 -0.665 -0.694 -4.300 -2.325 -3.447 ML 94 92 6 97 4 1 1 40 59 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 4 1 1 40 59 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 96 92 6 97 4 0 0 39 58 -4.568 -4.250 -2.265 -0.520 IL 97 97 5 97 4 1 1 42 61 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 98 98 6 98 3 1 1 40 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 17 - A - - - ML 99 98 6 101 5 1 1 37 56 -6.979 -0.042 -6.794 -7.006 -7.898 1.655 -2.107 -1.766 -1.625 D 100 98 6 101 5 0 0 36 54 -4.959 -0.803 -4.221 -2.596 -2.508 IL 101 101 3 101 5 1 1 37 56 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 18 39 G C - - MP 102 101 3 106 6 2 2 36 55 -9.055 -8.994 -0.022 -7.770 -8.050 -8.445 -4.487 -2.974 -4.566 0.367 -4.874 -4.592 -0.301 -4.788 -4.157 3.571 -4.513 -0.665 -0.694 -4.300 -2.325 -3.447 ML 103 101 3 106 6 1 1 35 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 3 106 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 3 106 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 36 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 19 38 G C - - MP 108 107 6 112 4 2 2 34 53 -6.734 -7.979 -0.089 -4.433 -4.487 -2.974 -4.566 0.367 -4.874 -4.592 -0.301 -4.788 -4.157 3.571 -4.513 -0.665 -0.694 -4.300 -2.325 -3.447 ML 109 107 6 112 4 1 1 33 52 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 4 1 1 33 52 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 111 107 6 112 4 0 0 31 50 -12.737 -14.007 -2.036 -0.404 IL 112 112 5 112 4 1 1 33 52 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 113 113 6 113 3 1 1 34 52 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 37 - A - - MR 114 113 6 116 5 1 1 32 51 -6.979 -0.042 -6.794 -7.006 -7.898 1.655 -2.107 -1.766 -1.625 D 115 113 6 116 5 0 0 30 49 -5.352 -0.707 -2.978 -4.409 -2.404 IR 116 116 3 116 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 20 36 A U - - MP 117 116 3 121 6 2 2 31 50 -9.055 -8.994 -0.022 -7.770 -8.050 -8.445 -3.581 -2.668 -3.613 3.175 -3.848 -4.894 0.438 -3.668 -3.515 1.307 -4.052 -0.181 0.020 -4.116 -1.504 -2.461 ML 118 116 3 121 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 3 121 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 3 121 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 21 35 g u - - MP 123 122 6 127 6 2 2 29 48 -9.055 -8.994 -0.022 -7.770 -8.050 -8.445 -3.453 -2.288 -3.605 1.229 -4.186 -4.916 0.175 -3.652 -3.314 1.578 -3.827 2.887 -0.186 -4.155 -1.765 -2.342 ML 124 122 6 127 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 22 34 U A - - MP 129 128 6 133 6 2 2 27 46 -9.055 -8.994 -0.022 -7.770 -8.050 -8.445 -3.923 -3.738 -3.789 -0.053 -2.791 -4.378 1.530 -3.467 -3.797 0.245 -4.184 -1.645 3.183 -4.083 -0.474 -2.647 ML 130 128 6 133 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 23 33 G C - - MP 135 134 6 139 4 2 2 25 44 -6.734 -7.979 -0.089 -4.433 -4.487 -2.974 -4.566 0.367 -4.874 -4.592 -0.301 -4.788 -4.157 3.571 -4.513 -0.665 -0.694 -4.300 -2.325 -3.447 ML 136 134 6 139 4 1 1 24 43 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 4 1 1 24 43 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 138 134 6 139 4 0 0 22 41 -12.737 -14.007 -2.036 -0.404 IL 139 139 5 139 4 1 1 24 43 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 140 140 6 140 3 1 1 25 43 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 32 - U - - MR 141 140 6 143 5 1 1 23 41 -6.979 -0.042 -6.794 -7.006 -7.898 -1.246 -1.285 -1.966 1.542 D 142 140 6 143 5 0 0 22 40 -5.352 -0.707 -2.978 -4.409 -2.404 IR 143 143 3 143 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 24 31 G C - - MP 144 143 3 148 6 2 2 22 40 -9.055 -8.994 -0.022 -7.770 -8.050 -8.445 -4.487 -2.974 -4.566 0.367 -4.874 -4.592 -0.301 -4.788 -4.157 3.571 -4.513 -0.665 -0.694 -4.300 -2.325 -3.447 ML 145 143 3 148 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 3 148 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 3 148 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 25 30 A U - - MP 150 149 6 154 4 2 2 20 38 -6.805 -7.012 -0.059 -5.426 -3.581 -2.668 -3.613 3.175 -3.848 -4.894 0.438 -3.668 -3.515 1.307 -4.052 -0.181 0.020 -4.116 -1.504 -2.461 ML 151 149 6 154 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 153 149 6 154 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 154 154 5 154 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 155 155 6 155 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 26 - C - - - ML 156 155 6 158 3 1 1 16 35 -7.832 -0.023 -6.486 -1.426 1.527 -2.237 -0.905 D 157 155 6 158 3 0 0 16 34 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 27 - G - - - ML 159 158 3 161 3 1 1 15 33 -7.832 -0.023 -6.486 -1.298 -2.472 1.649 -1.857 D 160 158 3 161 3 0 0 15 33 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 28 - A - - - ML 162 161 3 164 3 1 1 13 32 -7.832 -0.023 -6.486 1.655 -2.107 -1.766 -1.625 D 163 161 3 164 3 0 0 13 32 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 29 - G - - - ML 165 164 3 167 2 1 1 1 1 * 0.000 -1.298 -2.472 1.649 -1.857 D 166 164 3 167 2 0 0 0 0 * 0.000 IL 167 167 3 167 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 34 ] - - - - - - E 168 167 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-3193 ACC RF03185 DESC mir-3193 microRNA precursor family LENG 55 MAXL 140 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 03:57:48 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03185/CM NSEQ 2 EFFN 1.730469 CKSUM 702379683 STATS LOCAL MSV -8.0139 0.72816 STATS LOCAL VITERBI -8.9036 0.72816 STATS LOCAL FORWARD -3.1032 0.72816 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.54391 1.34636 1.18551 1.51103 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.66466 1.66659 2.35867 0.43550 1 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.90167 0.32902 2.62264 1.87845 2 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.89445 0.33011 2.61965 1.87734 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.64676 1.66652 2.35215 0.43842 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.38675 2.90980 0.22796 2.85716 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.88523 0.33152 2.61581 1.87592 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.36665 3.19377 0.22014 2.76805 7 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.64672 1.43186 2.39768 0.51195 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 0.49766 2.40926 1.57380 2.35480 9 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.38443 2.90747 0.22863 2.85379 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.38444 2.90748 0.22863 2.85380 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.49759 2.40943 1.57381 2.35507 12 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.31751 2.33252 2.82067 0.29455 13 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.87765 0.33268 2.61263 1.87474 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.64038 1.66650 2.34980 0.43948 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.38436 2.90740 0.22865 2.85369 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.21973 2.92180 2.67758 2.59428 17 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.38366 2.90670 0.22886 2.85267 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.38419 2.90723 0.22871 2.85343 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.50017 2.40325 1.57350 2.34519 20 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 1.78538 2.56874 0.40017 2.46005 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.63556 1.66648 2.34803 0.44029 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.38169 2.90472 0.22943 2.84981 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.36934 2.89236 0.23305 2.83197 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.49905 2.40592 1.57363 2.34946 25 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.46346 0.29831 3.02976 2.08373 26 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.36665 3.19377 0.22014 2.76805 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 0.21973 2.92180 2.67758 2.59428 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.36665 3.19377 0.22014 2.76805 29 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.58486 1.83243 2.22435 0.42094 30 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 3.06844 0.26799 2.73711 2.08883 31 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.31751 2.33252 2.82067 0.29455 32 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 3.06654 0.26823 2.73635 2.08846 33 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.50025 2.52739 1.50318 2.39328 34 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.68373 1.64521 2.37816 0.43696 35 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.58600 1.83250 2.22471 0.42073 36 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.21973 2.92180 2.67758 2.59428 37 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 3.05859 0.26924 2.73315 2.08691 38 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 3.04917 0.27045 2.72934 2.08506 39 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 3.07372 0.26732 2.73923 2.08986 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.49956 2.52946 1.50315 2.39612 41 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.15259 2.78459 0.28640 2.64371 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.46346 0.29831 3.02976 2.08373 43 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.58635 1.83252 2.22482 0.42067 44 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 3.07182 0.26756 2.73846 2.08949 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 3.07384 0.26731 2.73927 2.08988 46 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.58974 1.83273 2.22588 0.42006 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 1.93305 2.57348 0.37308 2.40340 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 0.21973 2.92180 2.67758 2.59428 49 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.15100 2.78270 0.28703 2.64124 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 3.07694 0.26692 2.74051 2.09048 51 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 0.49916 2.53065 1.50314 2.39776 52 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.15506 2.78750 0.28542 2.64753 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 2.15787 2.79083 0.28430 2.65189 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 0.49678 2.53783 1.50306 2.40766 55 A - - > 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //