INFERNAL1/a [1.1.4 | Dec 2020] NAME twister-P1 ACC RF03160 DESC type-P1 twister ribozyme STATES 210 NODES 56 CLEN 67 W 246 ALPH RNA RF no CONS yes MAP yes DATE Fri Jul 31 10:59:57 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmcalibrate --cpu 8 /nfs/production/xfam/users/rfamprod/rfam-14.3/zasha/Type-P1/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1613 EFFN 27.316717 CKSUM 989086891 NULL 0.000 0.000 0.000 0.000 GA 67.20 TC 67.20 NC 67.10 EFP7GF -17.2023 0.72353 ECMLC 0.73647 -4.12621 3.67744 1600000 375946 0.003192 ECMGC 0.39971 -17.79542 -4.93828 1600000 68231 0.005862 ECMLI 0.67679 -3.44765 4.75910 1600000 310004 0.003871 ECMGI 0.42721 -12.77467 -1.25423 1600000 54890 0.007287 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 0 1 246 444 -11.015 -10.954 -0.010 -9.303 -8.144 -10.405 IL 1 1 2 1 6 3 25 248 446 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 3 26 248 446 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 189 u a - - MP 3 2 3 7 6 6 29 247 445 -11.010 -10.950 -0.006 -9.726 -10.006 -10.401 -1.583 -2.204 -0.657 1.374 -1.554 -3.047 1.657 -2.961 -1.689 1.296 -1.790 -1.084 1.787 -2.757 0.056 -1.670 ML 4 2 3 7 6 2 24 244 443 -6.279 -6.625 -1.339 -0.976 -6.475 -4.004 0.462 -0.451 -0.188 0.019 MR 5 2 3 7 6 2 23 244 442 -7.140 -5.869 -1.352 -5.847 -0.981 -4.060 0.343 -0.605 0.205 -0.119 D 6 2 3 7 6 0 20 240 439 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 3 25 246 444 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 3 25 246 444 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 188 u a - - MP 9 8 6 13 6 5 27 245 443 -11.014 -10.953 -0.017 -7.624 -10.010 -7.793 -1.495 -2.498 -1.185 0.856 -2.113 -3.588 1.991 -3.024 -2.570 0.699 -2.047 -0.978 2.059 -2.819 0.708 -1.631 ML 10 8 6 13 6 2 23 243 441 -6.279 -6.625 -1.269 -1.034 -6.475 -4.004 0.326 -0.374 -0.239 0.172 MR 11 8 6 13 6 2 22 242 440 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 19 239 438 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 3 24 244 442 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 3 24 244 442 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 187 u a - - MP 15 14 6 19 6 4 26 243 441 -11.004 -10.943 -0.030 -7.380 -9.721 -6.312 -2.423 -2.785 -2.369 1.354 -1.029 -2.434 1.550 -2.772 -1.943 0.699 -3.238 -0.534 2.324 -2.915 -0.711 -0.435 ML 16 14 6 19 6 2 22 241 439 -6.506 -6.852 -1.512 -0.819 -6.702 -4.231 0.157 -0.372 -0.362 0.415 MR 17 14 6 19 6 2 21 240 439 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 19 239 437 -9.359 -8.057 -1.930 -4.536 -4.553 -0.629 IL 19 19 5 19 6 2 23 242 440 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 2 23 242 440 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 186 u a - - MP 21 20 6 25 4 4 26 241 439 -4.447 -3.662 -0.197 -8.399 -2.477 -2.644 -2.568 1.017 -1.667 -3.564 1.264 -1.542 -0.601 1.425 -2.086 -0.032 1.759 -2.854 0.571 -0.399 ML 22 20 6 25 4 1 21 240 438 -4.148 -4.331 -0.370 -3.060 0.077 -0.386 -0.189 0.382 MR 23 20 6 25 4 1 19 238 437 -4.824 -3.853 -1.721 -0.756 0.346 -0.379 -0.216 0.135 D 24 20 6 25 4 0 18 238 436 -5.332 -5.013 -0.907 -1.284 IL 25 25 5 25 4 2 24 240 438 -3.048 -3.732 -0.339 -6.217 0.000 0.000 0.000 0.000 IR 26 26 6 26 3 2 24 240 438 -1.278 -0.810 -5.847 0.000 0.000 0.000 0.000 [ MATL 5 ] 6 - U - - - ML 27 26 6 29 3 3 24 239 437 -10.907 -0.003 -9.561 -2.880 -2.636 -3.518 1.854 D 28 26 6 29 3 0 17 236 434 -6.242 -1.547 -0.633 IL 29 29 3 29 3 1 21 239 437 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 7 - A - - - ML 30 29 3 32 3 3 23 238 436 -10.908 -0.003 -9.459 1.975 -5.682 -5.411 -5.231 D 31 29 3 32 3 0 16 235 434 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 21 238 436 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 8 - A - - - ML 33 32 3 35 3 2 22 237 435 -7.073 -0.013 -9.184 1.968 -5.436 -4.934 -4.924 D 34 32 3 35 3 0 15 235 433 -5.626 -0.729 -1.409 IL 35 35 3 35 3 1 20 237 435 -2.147 -0.461 -4.385 0.000 0.000 0.000 0.000 [ MATR 8 ] - 181 - G - - MR 36 35 3 38 3 2 21 236 434 -11.213 -0.003 -9.531 -0.484 -1.409 1.454 -2.560 D 37 35 3 38 3 0 14 233 431 -6.422 -1.507 -0.652 IR 38 38 3 38 3 1 19 236 434 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 180 - G - - MR 39 38 3 41 3 2 21 235 433 -11.214 -0.003 -9.532 -0.554 -1.599 1.124 -0.307 D 40 38 3 41 3 0 13 232 430 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 18 235 433 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 179 - G - - MR 42 41 3 44 3 2 20 234 432 -11.214 -0.003 -9.418 -0.978 -3.104 1.629 -1.822 D 43 41 3 44 3 0 12 231 429 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 17 234 432 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 178 - A - - MR 45 44 3 47 3 2 19 233 431 -11.214 -0.003 -9.532 1.978 -5.889 -5.179 -6.041 D 46 44 3 47 3 0 12 230 428 -6.400 -1.549 -0.630 IR 47 47 3 47 3 1 16 233 431 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 177 - G - - MR 48 47 3 50 5 1 18 232 430 -7.089 -0.019 -9.683 -8.057 -10.787 -4.257 -6.150 1.967 -5.330 D 49 47 3 50 5 0 11 230 428 -5.352 -0.707 -2.978 -4.409 -2.404 IR 50 50 3 50 5 1 15 232 430 -2.573 -0.434 -6.084 -4.251 -5.357 0.000 0.000 0.000 0.000 [ MATP 13 ] 10 175 u a - - MP 51 50 3 55 6 2 17 231 429 -11.011 -10.951 -0.006 -9.254 -10.007 -10.402 -5.229 -3.844 -5.093 0.993 -3.510 -5.501 2.282 -4.856 -4.674 -0.664 -5.658 -2.471 2.919 -5.044 -1.532 -3.905 ML 52 50 3 55 6 1 13 228 426 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 3 55 6 1 13 228 427 -7.126 -5.855 -1.373 -5.833 -0.967 -4.047 0.672 -0.593 -0.298 -0.104 D 54 50 3 55 6 0 9 226 424 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 14 230 428 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 14 230 428 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 11 174 G C - - MP 57 56 6 61 6 2 15 229 427 -11.014 -10.953 -0.006 -9.730 -9.667 -10.405 -5.042 -4.098 -5.110 0.193 -4.358 -5.546 1.118 -5.289 -5.318 3.018 -5.681 -1.644 1.887 -5.074 -2.264 -3.804 ML 58 56 6 61 6 1 12 226 424 -6.282 -6.629 -1.343 -0.973 -6.478 -4.008 0.321 -0.373 -0.244 0.181 MR 59 56 6 61 6 1 12 226 425 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 9 226 424 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 13 228 426 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 13 228 426 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 12 173 C G - - MP 63 62 6 67 6 2 14 227 425 -11.014 -10.953 -0.045 -9.730 -7.061 -5.561 -6.245 -6.039 -5.751 -0.280 -4.315 -5.511 3.625 -5.385 -6.015 -1.522 -5.506 -3.694 0.948 -6.358 -1.974 -4.755 ML 64 62 6 67 6 1 11 224 422 -6.282 -6.629 -1.264 -1.037 -6.478 -4.008 0.395 -0.487 -0.005 -0.037 MR 65 62 6 67 6 1 11 225 423 -7.004 -5.733 -1.592 -5.711 -0.845 -3.925 0.341 -0.377 -0.222 0.146 D 66 62 6 67 6 0 9 226 424 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 12 226 424 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 12 226 424 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 172 a u - - MP 69 68 6 73 4 2 12 225 423 -9.938 -1.837 -0.481 -8.559 -2.578 -2.709 -2.745 2.064 -2.248 -3.589 2.057 -3.053 -2.013 1.604 -2.243 -1.294 0.926 -2.640 -0.892 -1.901 ML 70 68 6 73 4 1 10 220 418 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 4 1 9 223 421 -5.216 -2.102 -1.753 -1.173 0.214 -0.230 -0.538 0.377 D 72 68 6 73 4 0 9 226 424 -5.714 -0.806 -3.411 -1.666 IL 73 73 5 73 4 1 11 224 422 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 74 74 6 74 3 1 12 230 429 -0.192 -3.018 -9.719 0.000 0.000 0.000 0.000 [ MATL 17 ] 14 - G - - - ML 75 74 6 77 3 1 10 217 415 -10.908 -0.003 -9.562 -0.557 -3.906 1.634 -2.748 D 76 74 6 77 3 0 7 215 413 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 10 218 416 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 15 - C - - - ML 78 77 3 80 3 1 9 216 414 -11.214 -0.342 -2.246 -4.791 1.911 -2.881 -3.872 D 79 77 3 80 3 0 7 215 413 -5.620 -0.734 -1.403 IL 80 80 3 80 3 1 9 217 415 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 147 - A - - MR 81 80 3 83 3 1 9 215 413 -10.875 -0.003 -9.193 1.670 -1.308 -2.381 -2.174 D 82 80 3 83 3 0 6 214 412 -10.162 -0.221 -2.826 IR 83 83 3 83 3 1 8 215 414 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 146 - A - - MR 84 83 3 86 3 1 8 214 412 -11.183 -0.003 -9.501 1.707 -2.481 -1.812 -1.883 D 85 83 3 86 3 0 5 212 410 -7.577 -1.277 -0.781 IR 86 86 3 86 3 1 7 214 413 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 145 - A - - MR 87 86 3 89 3 1 7 213 411 -11.198 -0.003 -9.516 1.569 -1.497 -1.669 -1.459 D 88 86 3 89 3 0 4 210 408 -7.134 -0.727 -1.364 IR 89 89 3 89 3 1 6 213 411 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 144 - u - - MR 90 89 3 92 3 1 6 212 410 -11.214 -0.003 -9.532 0.177 -1.519 -0.897 0.988 D 91 89 3 92 3 0 4 205 402 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 6 212 410 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 143 - A - - MR 93 92 3 95 2 1 5 211 409 -2.641 -0.252 1.010 -2.652 0.358 -0.874 D 94 92 3 95 2 0 4 200 395 -4.432 -0.068 IR 95 95 3 95 2 1 6 229 428 -0.135 -3.489 0.000 0.000 0.000 0.000 [ BIF 24 ] - - - - - - B 96 95 3 97 159 0 3 188 365 [ BEGL 25 ] - - - - - - S 97 96 1 98 4 0 0 172 349 -0.306 -9.048 -7.146 -2.455 [ MATP 26 ] 16 109 C G - - MP 98 97 1 102 6 2 2 174 351 -10.741 -10.680 -0.096 -9.457 -5.348 -4.748 -6.418 -6.297 -6.144 -1.874 -4.376 -5.748 3.631 -4.673 -6.111 -1.145 -6.446 -4.044 1.221 -6.470 -1.852 -4.865 ML 99 97 1 102 6 1 1 171 348 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 100 97 1 102 6 1 1 171 348 -7.215 -5.944 -1.803 -5.922 -0.696 -4.136 0.783 -0.674 -0.393 -0.166 D 101 97 1 102 6 0 0 159 336 -12.600 -11.298 -7.096 -7.778 -7.795 -0.025 IL 102 102 5 102 6 1 1 173 350 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 103 103 6 103 5 1 1 173 350 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 17 108 a u - - MP 104 103 6 108 6 2 2 172 349 -10.653 -10.592 -0.022 -9.369 -9.214 -6.569 -0.798 -2.121 -2.569 1.900 -2.448 -3.420 0.974 -2.828 -2.636 0.736 -3.209 -0.792 1.252 -2.219 -0.345 1.592 ML 105 103 6 108 6 1 1 170 347 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 106 103 6 108 6 1 1 170 347 -7.986 -6.715 -1.761 -6.693 -0.625 -4.907 -0.012 0.233 -0.287 0.019 D 107 103 6 108 6 0 0 158 335 -12.818 -11.516 -7.313 -7.995 -8.013 -0.021 IL 108 108 5 108 6 1 1 171 348 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 109 109 6 109 5 1 1 171 348 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 18 107 g c - - MP 110 109 6 114 6 2 2 170 347 -10.650 -10.589 -0.021 -9.365 -9.645 -6.600 -4.193 -2.533 -3.992 1.257 -4.232 -3.357 1.462 -4.621 -4.160 2.846 -4.592 -1.078 1.144 -3.954 -2.110 -3.229 ML 111 109 6 114 6 1 1 168 345 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 112 109 6 114 6 1 1 168 345 -7.792 -6.521 -0.706 -6.500 -1.633 -4.713 0.864 -0.496 -0.743 -0.195 D 113 109 6 114 6 0 0 158 335 -12.867 -11.565 -7.362 -8.045 -8.062 -0.020 IL 114 114 5 114 6 1 1 169 346 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 115 115 6 115 5 1 1 169 346 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 19 106 u a - - MP 116 115 6 120 6 2 2 168 345 -10.668 -10.607 -0.123 -6.186 -9.664 -3.936 -3.148 -2.718 -3.572 1.311 -2.740 -4.419 1.662 -3.710 -3.460 1.319 -4.153 -1.397 2.550 -3.374 -0.741 -2.640 ML 117 115 6 120 6 1 1 167 344 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 118 115 6 120 6 1 1 166 343 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 119 115 6 120 6 0 0 158 335 -12.914 -11.612 -7.409 -8.091 -8.108 -0.020 IL 120 120 5 120 6 1 1 168 345 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 121 121 6 121 5 1 1 167 344 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 20 105 a u - - MP 122 121 6 126 6 2 2 167 344 -10.553 -10.492 -0.124 -6.690 -6.364 -4.076 -2.405 -2.329 -2.561 2.275 -2.432 -3.351 1.484 -2.932 -2.702 1.426 -2.598 -0.350 0.725 -2.603 0.515 -1.492 ML 123 121 6 126 6 1 1 165 342 -6.816 -7.162 -0.820 -1.446 -7.012 -4.541 0.915 -0.785 -0.620 -0.178 MR 124 121 6 126 6 1 1 164 341 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 125 121 6 126 6 0 0 157 334 -13.201 -11.900 -7.697 -8.379 -8.396 -0.016 IL 126 126 5 126 6 1 1 166 343 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 127 127 6 127 5 1 1 166 343 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 21 104 u a - - MP 128 127 6 132 4 2 2 165 342 -9.285 -9.492 -0.129 -3.598 -2.264 -2.228 -2.563 0.933 -2.523 -3.413 1.543 -2.818 -1.713 1.255 -3.144 1.055 1.945 -2.453 -0.129 -1.529 ML 129 127 6 132 4 1 1 164 341 -4.081 -4.264 -0.390 -2.993 0.204 -0.328 -0.308 0.314 MR 130 127 6 132 4 1 1 162 339 -5.286 -4.315 -0.995 -1.243 0.319 -0.447 -0.384 0.325 D 131 127 6 132 4 0 0 157 334 -8.831 -8.513 -6.528 -0.023 IL 132 132 5 132 4 1 1 165 342 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 133 133 6 133 3 1 1 165 342 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 22 - c - - - ML 134 133 6 136 3 1 1 163 340 -10.143 -0.118 -3.688 0.236 0.375 -0.552 -0.245 D 135 133 6 136 3 0 0 157 334 -11.094 -6.081 -0.022 IL 136 136 3 136 3 1 1 164 341 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 23 - u - - - ML 137 136 3 139 3 1 1 163 340 -0.266 -2.589 -8.689 -0.069 -0.984 -0.458 0.858 D 138 136 3 139 3 0 0 157 334 -3.819 -0.138 -5.623 IL 139 139 3 139 3 1 1 162 339 -0.351 -2.224 -9.056 0.000 0.000 0.000 0.000 [ MATL 34 ] 42 - c - - - ML 140 139 3 142 3 1 1 157 334 -10.906 -0.003 -9.560 -0.160 0.323 -0.535 0.219 D 141 139 3 142 3 0 0 154 330 -6.308 -1.821 -0.506 IL 142 142 3 142 3 1 1 157 334 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 43 - a - - - ML 143 142 3 145 3 1 1 156 333 -10.906 -0.003 -9.560 0.428 -0.458 -0.729 0.404 D 144 142 3 145 3 0 0 152 329 -6.308 -1.821 -0.506 IL 145 145 3 145 3 1 1 156 333 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 44 - u - - - ML 146 145 3 148 3 1 1 155 332 -10.906 -0.021 -6.153 0.300 -0.192 -1.152 0.530 D 147 145 3 148 3 0 0 151 328 -6.308 -1.821 -0.506 IL 148 148 3 148 3 1 1 155 332 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 45 - u - - - ML 149 148 3 151 3 1 1 154 331 -10.888 -0.482 -1.819 0.176 -0.537 -0.263 0.430 D 150 148 3 151 3 0 0 150 327 -7.175 -2.688 -0.255 IL 151 151 3 151 3 1 1 155 332 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 46 - a - - - ML 152 151 3 154 3 1 1 154 331 -0.517 -3.462 -2.248 0.723 -1.006 0.018 -0.254 D 153 151 3 154 3 0 0 149 326 -1.023 -5.186 -1.057 IL 154 154 3 154 3 1 1 156 333 -0.150 -3.747 -5.359 0.000 0.000 0.000 0.000 [ MATL 39 ] 103 - g - - - ML 155 154 3 157 2 1 1 1 1 * 0.000 -0.051 -1.256 0.879 -0.365 D 156 154 3 157 2 0 0 0 0 * 0.000 IL 157 157 3 157 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 40 ] - - - - - - E 158 157 3 -1 0 0 0 0 0 [ BEGR 41 ] - - - - - - S 159 96 1 160 5 0 0 28 46 -9.868 -0.083 -4.227 -9.895 -10.787 IL 160 160 2 160 5 1 1 30 48 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 110 126 c g - - MP 161 160 2 165 6 2 2 28 47 -10.949 -10.888 -0.006 -9.664 -9.944 -10.339 -2.972 -3.237 -3.087 1.781 -2.462 -4.036 2.541 -3.188 -3.283 1.310 -3.979 -1.352 1.131 -3.551 -0.978 -2.198 ML 162 160 2 165 6 1 1 27 46 -7.944 -8.290 -0.294 -2.699 -8.140 -5.669 1.289 -1.173 -0.972 -0.727 MR 163 160 2 165 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 164 160 2 165 6 0 0 26 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 165 165 5 165 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 166 166 6 166 5 1 1 28 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 111 125 C G - - MP 167 166 6 171 6 2 2 26 44 -11.015 -10.954 -0.006 -9.731 -10.010 -10.405 -5.386 -5.104 -5.049 0.792 -3.237 -6.228 3.198 -4.820 -5.259 1.105 -5.771 -2.600 1.063 -5.572 -1.633 -3.992 ML 168 166 6 171 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 169 166 6 171 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 170 166 6 171 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 171 171 5 171 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 172 172 6 172 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 112 124 G C - - MP 173 172 6 177 4 2 2 24 42 -9.985 -10.192 -0.006 -8.607 -5.156 -3.221 -4.978 1.528 -6.049 -5.576 0.443 -5.648 -5.221 3.226 -5.373 -1.280 0.579 -4.626 -3.145 -3.940 ML 174 172 6 177 4 1 1 27 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 175 172 6 177 4 1 1 26 45 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 176 172 6 177 4 0 0 25 44 -4.568 -4.250 -2.265 -0.520 IL 177 177 5 177 4 1 1 28 47 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 178 178 6 178 3 1 1 27 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 113 - G - - - ML 179 178 6 181 3 1 1 22 40 -10.908 -0.003 -9.562 -4.319 -7.005 1.970 -5.416 D 180 178 6 181 3 0 0 22 40 -6.174 -1.687 -0.566 IL 181 181 3 181 3 1 1 26 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 114 - U - - - ML 182 181 3 184 3 1 1 20 39 -10.908 -0.003 -9.562 -4.265 -3.834 -4.592 1.940 D 183 181 3 184 3 0 0 21 39 -6.174 -1.687 -0.566 IL 184 184 3 184 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 115 - C - - - ML 185 184 3 187 3 1 1 19 37 -10.908 -0.003 -9.562 -2.469 1.405 -1.550 -0.269 D 186 184 3 187 3 0 0 20 38 -6.174 -1.687 -0.566 IL 187 187 3 187 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 116 - C - - - ML 188 187 3 190 3 1 1 18 36 -10.908 -0.003 -9.562 -0.292 1.074 -1.597 -0.421 D 189 187 3 190 3 0 0 19 37 -6.174 -1.687 -0.566 IL 190 190 3 190 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 117 - C - - - ML 191 190 3 193 3 1 1 17 35 -10.908 -0.003 -9.562 -1.785 1.600 -3.295 -0.794 D 192 190 3 193 3 0 0 18 36 -6.174 -1.687 -0.566 IL 193 193 3 193 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 118 - A - - - ML 194 193 3 196 3 1 1 16 34 -10.908 -0.003 -9.562 1.934 -3.342 -4.512 -4.826 D 195 193 3 196 3 0 0 17 35 -6.174 -1.687 -0.566 IL 196 196 3 196 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 119 - A - - - ML 197 196 3 199 3 1 1 15 32 -10.908 -0.003 -9.562 1.973 -6.216 -4.721 -5.468 D 198 196 3 199 3 0 0 16 34 -6.174 -1.687 -0.566 IL 199 199 3 199 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 120 - G - - - ML 200 199 3 202 3 1 1 14 31 -10.908 -0.003 -9.562 -3.884 -2.778 1.906 -4.696 D 201 199 3 202 3 0 0 14 33 -6.174 -1.687 -0.566 IL 202 202 3 202 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 121 - C - - - ML 203 202 3 205 3 1 1 13 29 -7.068 -0.013 -9.462 -3.411 1.664 -2.368 -0.881 D 204 202 3 205 3 0 0 12 29 -6.174 -1.687 -0.566 IL 205 205 3 205 3 1 1 16 32 -1.610 -0.685 -4.310 0.000 0.000 0.000 0.000 [ MATL 54 ] 123 - C - - - ML 206 205 3 208 2 1 1 1 1 * 0.000 -5.037 1.961 -5.269 -4.351 D 207 205 3 208 2 0 0 0 0 * 0.000 IL 208 208 3 208 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 55 ] - - - - - - E 209 208 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME twister-P1 ACC RF03160 DESC type-P1 twister ribozyme LENG 67 MAXL 270 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Jul 31 10:59:57 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED NSEQ 1613 EFFN 906.700256 CKSUM 989086891 STATS LOCAL MSV -8.0062 0.72353 STATS LOCAL VITERBI -9.0103 0.72353 STATS LOCAL FORWARD -3.7133 0.72353 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.29637 1.43114 1.31010 1.52488 1.38629 1.38629 1.38629 1.38629 0.00012 9.68655 9.68655 1.46634 0.26236 0.00000 * 1 1.41670 1.47354 1.53168 1.16411 1 u - - ( 1.38629 1.38629 1.38629 1.38629 0.00012 9.68655 9.68655 1.46634 0.26236 1.09861 0.40547 2 1.97282 1.20946 2.17231 0.80149 2 u - - ( 1.38629 1.38629 1.38629 1.38629 0.00491 9.68980 5.33231 1.46634 0.26236 1.09861 0.40547 3 1.77494 1.47538 2.05795 0.74634 3 u - - ( 1.38629 1.38629 1.38629 1.38629 0.01545 9.68502 4.18204 1.46634 0.26236 0.02530 3.68964 4 2.19341 1.79958 1.12703 0.91854 4 u - - ( 1.38629 1.38629 1.38629 1.38629 0.04869 3.05762 7.54609 0.00267 5.92592 0.02545 3.68381 5 3.83307 3.59903 4.22881 0.06567 6 U - - - 1.38629 1.38629 1.38629 1.38629 0.00012 9.68908 9.68908 1.46634 0.26236 0.14712 1.98917 6 0.00765 6.17610 6.36355 5.56741 7 A - - - 1.38629 1.38629 1.38629 1.38629 0.00023 9.68980 8.70072 1.46634 0.26236 1.09861 0.40547 7 0.01103 6.14452 5.55049 5.31097 8 A - - - 1.38629 1.38629 1.38629 1.38629 0.01066 4.87922 5.80820 0.01621 4.13028 0.55609 0.85202 8 2.05321 1.19461 5.14464 0.57443 10 U - - ( 1.38629 1.38629 1.38629 1.38629 0.00012 9.68685 9.68685 1.46634 0.26236 0.04041 3.22876 9 3.25718 2.11967 0.55977 1.30900 11 G - - ( 1.38629 1.38629 1.38629 1.38629 0.00045 9.68980 7.84740 1.46634 0.26236 1.09861 0.40547 10 3.16839 0.16583 5.32635 2.24547 12 C - - ( 1.38629 1.38629 1.38629 1.38629 0.03484 9.68947 3.37611 1.46634 0.26236 0.27526 1.42451 11 1.09311 1.15742 1.37094 2.33651 13 a - - ( 1.38629 1.38629 1.38629 1.38629 0.00013 9.65510 9.65510 1.46634 0.26236 0.00362 5.62383 12 1.76596 5.93641 0.21794 3.80944 14 G - - , 1.38629 1.38629 1.38629 1.38629 0.00012 9.68980 9.68980 1.46634 0.26236 1.09861 0.40547 13 6.02316 0.05099 3.25750 4.73245 15 C - - , 1.38629 1.38629 1.38629 1.38629 0.24688 9.68980 1.52005 1.46634 0.26236 1.09861 0.40547 14 5.38718 0.17239 4.17289 1.97785 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.08354 9.44308 2.52488 1.46634 0.26236 6.32792 0.00179 15 1.03142 2.73737 2.37984 0.72115 17 u - - < 1.38629 1.38629 1.38629 1.38629 0.01400 9.36017 4.28224 1.46634 0.26236 3.58358 0.02817 16 1.93234 1.60086 0.69931 1.85445 18 g - - < 1.38629 1.38629 1.38629 1.38629 0.01308 9.35721 4.34973 1.46634 0.26236 2.56058 0.08041 17 1.75602 1.78345 1.75904 0.71949 19 u - - < 1.38629 1.38629 1.38629 1.38629 0.09210 9.37465 2.43154 1.46634 0.26236 8.38235 0.00023 18 0.79207 1.80732 1.49688 1.83777 20 a - - < 1.38629 1.38629 1.38629 1.38629 0.10045 9.28273 2.34885 1.46634 0.26236 8.59494 0.00019 19 2.36225 1.78727 0.97056 1.02303 21 g - - < 1.38629 1.38629 1.38629 1.38629 0.08874 9.18248 2.46732 1.46634 0.26236 3.68525 0.02541 20 1.22817 0.95669 1.79373 1.85361 22 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02210 9.11182 3.82834 1.46634 0.26236 5.33646 0.00482 21 1.58463 2.42238 1.69983 0.64712 23 U - - _ 1.38629 1.38629 1.38629 1.38629 2.84900 0.05977 9.09368 1.56490 0.23459 0.00028 8.19645 22 1.60162 1.06742 1.76736 1.25965 42 c - - _ 1.38629 1.38629 1.38629 1.38629 0.00158 9.68980 6.48791 1.46634 0.26236 1.09861 0.40547 23 1.06243 1.72377 1.96954 1.08924 43 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00012 9.68834 9.68834 1.46634 0.26236 3.28012 0.03835 24 1.17242 1.49348 2.40464 0.97951 44 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01379 9.68834 4.29490 1.46634 0.26236 3.28012 0.03835 25 1.29251 1.79700 1.53647 1.06571 45 u - - _ 1.38629 1.38629 1.38629 1.38629 0.15771 9.67467 1.92523 1.46634 0.26236 0.70456 0.68186 26 0.78992 2.32001 1.28081 1.77177 46 a - - _ 1.38629 1.38629 1.38629 1.38629 2.52681 0.30874 1.68355 2.41021 0.09409 3.54233 0.02937 27 1.47575 2.56769 0.63820 1.79312 103 G - - _ 1.38629 1.38629 1.38629 1.38629 0.19778 9.32680 1.71837 1.46634 0.26236 2.23295 0.11341 28 1.12369 1.81239 1.57208 1.19058 104 a - - > 1.38629 1.38629 1.38629 1.38629 0.01867 9.18476 3.99589 1.46634 0.26236 1.87169 0.16707 29 3.11405 1.69375 1.27974 0.70595 105 u - - > 1.38629 1.38629 1.38629 1.38629 0.00019 9.26427 9.26427 1.46634 0.26236 1.51374 0.24857 30 0.74400 1.77284 1.71440 1.74372 106 a - - > 1.38629 1.38629 1.38629 1.38629 0.00017 9.37465 9.37465 1.46634 0.26236 3.37487 0.03482 31 1.74603 0.70319 1.65168 1.97468 107 c - - > 1.38629 1.38629 1.38629 1.38629 0.00017 9.38717 9.38717 1.46634 0.26236 3.31420 0.03704 32 1.77636 2.23841 2.33507 0.46630 108 U - - > 1.38629 1.38629 1.38629 1.38629 0.00017 9.39987 9.39987 1.46634 0.26236 1.88896 0.16397 33 1.97870 4.13752 0.17464 5.11133 109 G - - > 1.38629 1.38629 1.38629 1.38629 0.00016 9.44944 9.44944 1.46634 0.26236 0.00058 7.45414 34 1.22641 0.86339 1.78604 2.14297 110 c - - < 1.38629 1.38629 1.38629 1.38629 0.00012 9.68980 9.68980 1.46634 0.26236 1.09861 0.40547 35 2.26182 0.40922 2.02214 2.30962 111 C - - < 1.38629 1.38629 1.38629 1.38629 0.00012 9.68980 9.68980 1.46634 0.26236 1.09861 0.40547 36 1.69962 2.51401 0.45281 2.29796 112 G - - < 1.38629 1.38629 1.38629 1.38629 0.00012 9.68980 9.68980 1.46634 0.26236 1.09861 0.40547 37 4.76311 9.79865 0.01175 5.78214 113 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00012 9.68980 9.68980 1.46634 0.26236 1.09861 0.40547 38 7.85613 5.56167 5.75575 0.00742 114 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00012 9.68980 9.68980 1.46634 0.26236 1.09861 0.40547 39 3.92151 0.35502 2.42513 1.65778 115 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00012 9.68980 9.68980 1.46634 0.26236 1.09861 0.40547 40 1.62610 0.54694 2.65988 1.86670 116 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00012 9.68980 9.68980 1.46634 0.26236 1.09861 0.40547 41 2.81456 0.22011 4.08515 2.11345 117 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00012 9.68980 9.68980 1.46634 0.26236 1.09861 0.40547 42 0.02936 3.69621 5.54073 8.54721 118 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00012 9.68980 9.68980 1.46634 0.26236 1.09861 0.40547 43 0.00986 9.36127 4.95781 5.91426 119 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00012 9.68980 9.68980 1.46634 0.26236 1.09861 0.40547 44 5.15610 3.23133 0.04832 6.26400 120 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00012 9.68980 9.68980 1.46634 0.26236 1.09861 0.40547 45 5.32480 0.19787 3.01367 2.07511 121 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00765 4.89837 8.72098 0.01652 4.11148 1.09861 0.40547 46 6.33419 0.00825 6.23424 5.40748 123 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00012 9.68970 9.68970 1.46634 0.26236 0.56478 0.84045 47 2.30403 0.45541 2.50604 1.69084 124 C - - > 1.38629 1.38629 1.38629 1.38629 0.00012 9.68980 9.68980 1.46634 0.26236 1.09861 0.40547 48 2.29424 2.03184 0.41105 2.25271 125 G - - > 1.38629 1.38629 1.38629 1.38629 0.05851 9.68980 2.86869 1.46634 0.26236 1.09861 0.40547 49 2.13924 1.80920 0.80701 1.30092 126 g - - > 1.38629 1.38629 1.38629 1.38629 0.19499 1.73107 9.63142 2.53955 0.08219 0.00218 6.13014 50 0.63016 4.33240 1.08271 2.15692 143 A - - , 1.38629 1.38629 1.38629 1.38629 0.00012 9.68980 9.68980 1.46634 0.26236 1.09861 0.40547 51 1.27751 2.87883 2.11796 0.60735 144 U - - , 1.38629 1.38629 1.38629 1.38629 0.01220 9.68980 4.41720 1.46634 0.26236 1.09861 0.40547 52 0.25423 2.52559 2.64581 2.61007 145 A - - , 1.38629 1.38629 1.38629 1.38629 0.01104 9.67772 4.51789 1.46634 0.26236 5.28281 0.00509 53 0.16710 3.46024 2.71180 2.88159 146 A - - , 1.38629 1.38629 1.38629 1.38629 0.16416 9.66681 1.88830 1.46634 0.26236 5.91366 0.00271 54 0.18728 2.30761 3.32355 3.34480 147 A - - , 1.38629 1.38629 1.38629 1.38629 0.48250 0.96054 9.50280 2.14437 0.12459 0.00073 7.22903 55 2.27736 1.47772 1.12461 1.06564 172 u - - ) 1.38629 1.38629 1.38629 1.38629 0.00070 9.68980 7.35481 1.46634 0.26236 1.09861 0.40547 56 2.27961 5.35950 0.16175 3.16253 173 G - - ) 1.38629 1.38629 1.38629 1.38629 0.00012 9.68922 9.68922 1.46634 0.26236 2.51198 0.08459 57 1.31234 0.56540 2.11873 3.15837 174 C - - ) 1.38629 1.38629 1.38629 1.38629 0.00012 9.68922 9.68922 1.46634 0.26236 0.17699 1.81884 58 0.57472 4.91056 1.19391 2.06565 175 A - - ) 1.38629 1.38629 1.38629 1.38629 0.00697 4.97867 9.68980 0.01789 4.03227 1.09861 0.40547 59 4.78230 6.43181 0.01301 5.82846 177 G - - - 1.38629 1.38629 1.38629 1.38629 0.00024 9.68980 8.61439 1.46634 0.26236 1.09861 0.40547 60 0.00590 6.18651 5.59896 8.99194 178 A - - - 1.38629 1.38629 1.38629 1.38629 0.00012 9.68968 9.68968 1.46634 0.26236 0.52017 0.90243 61 2.14908 4.24497 0.21096 2.82577 179 G - - - 1.38629 1.38629 1.38629 1.38629 0.00012 9.68980 9.68980 1.46634 0.26236 1.09861 0.40547 62 1.88694 2.70345 0.54202 1.60985 180 G - - - 1.38629 1.38629 1.38629 1.38629 0.00052 9.68980 7.68844 1.46634 0.26236 1.09861 0.40547 63 1.72399 2.35182 0.34836 3.88205 181 G - - - 1.38629 1.38629 1.38629 1.38629 0.11224 2.51774 3.66804 0.56443 0.84091 0.23926 1.54747 64 1.16979 1.65264 1.39796 1.38260 186 a - - ) 1.38629 1.38629 1.38629 1.38629 0.00544 9.66401 5.22868 1.46634 0.26236 0.20036 1.70613 65 0.78398 2.41673 1.60900 1.36997 187 a - - ) 1.38629 1.38629 1.38629 1.38629 0.00013 9.67954 9.67954 1.46634 0.26236 0.01261 4.37937 66 1.05140 2.48516 0.78663 2.19045 188 g - - ) 1.38629 1.38629 1.38629 1.38629 0.00012 9.68929 9.68929 1.46634 0.26236 1.09861 0.40547 67 1.20811 1.72621 1.09355 1.66996 189 g - - ) 1.38629 1.38629 1.38629 1.38629 0.00006 9.68922 * 1.46634 0.26236 0.00000 * //