INFERNAL1/a [1.1.4 | Dec 2020] NAME L31-Firmicutes ACC RF03156 DESC L31-Firmicutes ribosomal protein leader STATES 94 NODES 24 CLEN 30 W 97 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 9 10:18:02 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmcalibrate --cpu 8 CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1083 EFFN 1083.000000 CKSUM 3760353181 NULL 0.000 0.000 0.000 0.000 GA 33.30 TC 33.30 NC 33.20 EFP7GF -13.3541 0.73866 ECMLC 0.58404 -10.47311 1.10820 1600000 1039257 0.001155 ECMGC 0.39417 -21.47769 -5.20041 1600000 244609 0.001635 ECMLI 0.54028 -10.15967 1.92393 1600000 821267 0.001461 ECMGI 0.38949 -19.20645 -3.40968 1600000 187999 0.002128 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 97 165 -15.009 -16.255 -0.000 -12.708 IL 1 1 2 1 4 1 5 98 166 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 6 98 166 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 75 - G - - MR 3 2 3 5 3 1 10 97 165 -16.418 -0.000 -14.735 -3.910 -12.220 1.957 -4.336 D 4 2 3 5 3 0 3 95 163 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 5 97 165 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 74 - A - - MR 6 5 3 8 3 1 9 96 164 -16.418 -0.000 -14.735 1.982 -11.980 -4.350 -11.368 D 7 5 3 8 3 0 3 94 162 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 5 96 164 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 73 - G - - MR 9 8 3 11 3 1 8 95 163 -16.418 -0.000 -14.735 -10.649 -12.407 2.000 -11.397 D 10 8 3 11 3 0 3 93 161 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 5 95 163 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 72 - G - - MR 12 11 3 14 3 1 7 94 162 -16.418 -0.001 -10.045 0.051 -10.625 1.553 -5.097 D 13 11 3 14 3 0 3 92 160 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 4 94 162 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 71 - A - - MR 15 14 3 17 3 1 6 93 161 -16.416 -0.000 -14.734 1.969 -5.531 -3.976 -10.886 D 16 14 3 17 3 0 3 91 159 -7.988 -3.166 -0.177 IR 17 17 3 17 3 1 4 93 161 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 70 - A - - MR 18 17 3 20 3 1 5 92 160 -16.416 -0.000 -14.734 1.959 -11.848 -3.149 -11.315 D 19 17 3 20 3 0 3 91 158 -7.988 -0.943 -1.071 IR 20 20 3 20 3 1 4 92 160 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 69 - G - - MR 21 20 3 23 3 1 4 91 159 -16.417 -0.280 -2.504 0.596 -4.076 1.224 -3.419 D 22 20 3 23 3 0 2 90 158 -7.230 -0.667 -1.460 IR 23 23 3 23 3 1 4 92 159 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 68 - G - - MR 24 23 3 26 3 1 4 90 158 -2.205 -0.353 -14.456 -0.153 -2.304 1.468 -2.919 D 25 23 3 26 3 0 1 89 157 -15.011 -0.002 -9.241 IR 26 26 3 26 3 1 4 90 158 -2.702 -0.241 -11.697 0.000 0.000 0.000 0.000 [ MATR 9 ] - 65 - C - - MR 27 26 3 29 5 1 4 89 157 -6.172 -0.020 -14.873 -15.085 -15.977 -4.561 1.984 -11.158 -10.167 D 28 26 3 29 5 0 0 87 155 -5.352 -0.707 -2.978 -4.409 -2.404 IR 29 29 3 29 5 1 1 89 157 -5.827 -0.040 -9.338 -7.506 -8.612 0.000 0.000 0.000 0.000 [ MATP 10 ] 1 63 C G - - MP 30 29 3 34 6 2 5 88 156 -15.992 -15.931 -0.000 -14.708 -14.988 -15.383 -13.044 -13.325 -12.361 -9.562 -10.712 -12.506 3.970 -11.627 -12.465 -9.534 -12.585 -11.729 -7.444 -12.878 -1.652 -11.267 ML 31 29 3 34 6 1 1 86 154 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 3 34 6 1 1 85 153 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 3 34 6 0 0 81 149 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 1 87 155 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 1 87 155 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 2 62 U G - - MP 36 35 6 40 6 2 5 86 154 -15.992 -15.931 -0.000 -14.708 -14.988 -15.383 -13.043 -13.320 -12.361 -9.557 -10.713 -12.507 -2.159 -11.628 -12.464 -9.530 -12.585 -11.716 -7.445 -12.878 3.979 -11.267 ML 37 35 6 40 6 1 1 84 151 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 1 1 83 151 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 0 0 79 147 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 1 85 153 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 1 85 153 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 3 61 C G - - MP 42 41 6 46 6 2 4 84 152 -15.992 -15.931 -0.000 -14.708 -14.988 -15.383 -11.624 -11.454 -11.411 1.513 -10.067 -11.959 3.347 -10.832 -11.353 -2.898 -11.726 -9.148 0.692 -11.708 0.123 -3.007 ML 43 41 6 46 6 1 1 82 149 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 1 81 149 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 0 76 144 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 1 83 151 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 1 83 151 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 4 60 U A - - MP 48 47 6 52 6 2 2 82 150 -15.992 -15.931 -0.030 -5.634 -14.988 -11.060 -3.013 -13.316 -12.361 -9.554 -10.714 -12.507 -2.215 -11.628 -12.464 -9.528 -12.585 -11.707 3.968 -12.879 -8.416 -11.266 ML 49 47 6 52 6 1 1 80 147 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 1 78 146 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 0 73 141 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 1 81 149 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 1 81 149 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 5 59 G C - - MP 54 53 6 58 6 2 2 80 148 -1.160 -3.838 -1.060 -14.678 -14.958 -8.523 -13.742 -7.333 -15.475 -0.197 -15.252 -1.706 -9.651 -15.349 -11.859 3.831 -12.050 -2.532 -1.831 -2.990 -12.047 -14.550 ML 55 53 6 58 6 1 1 77 145 -11.276 -0.355 -2.322 -6.031 -11.472 -9.001 -5.959 1.979 -6.414 -5.066 MR 56 53 6 58 6 1 1 73 141 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 0 66 134 -9.967 -8.666 -4.463 -5.145 -5.162 -0.160 IL 58 58 5 58 6 1 2 80 148 -0.644 -1.617 -4.881 -14.963 -15.740 -15.400 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 1 77 144 -0.806 -1.228 -15.554 -13.722 -10.077 0.000 0.000 0.000 0.000 [ MATP 15 ] 13 51 u a - - MP 60 59 6 64 6 2 2 74 141 -15.986 -15.925 -0.043 -5.580 -14.982 -6.865 -6.938 -8.888 -4.880 1.917 -8.755 -9.963 0.933 -9.213 -6.622 1.500 -3.324 1.066 2.200 -9.263 -0.928 -3.180 ML 61 59 6 64 6 1 1 73 140 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 1 71 138 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 0 62 130 -12.248 -10.946 -6.743 -7.425 -7.443 -0.032 IL 64 64 5 64 6 1 1 73 140 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 1 73 140 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 14 50 c g - - MP 66 65 6 70 6 2 2 72 139 -15.943 -15.882 -0.331 -6.039 -14.939 -2.399 -10.228 -4.588 -10.230 0.924 -6.859 -11.074 2.955 -9.755 -10.090 0.443 -10.604 -1.683 1.519 -1.720 0.522 -5.736 ML 67 65 6 70 6 1 1 72 140 -11.322 -11.668 -6.383 -0.022 -11.518 -9.048 -6.006 1.980 -6.460 -5.112 MR 68 65 6 70 6 1 1 68 136 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 0 62 129 -13.762 -12.460 -8.257 -8.939 -8.957 -0.011 IL 70 70 5 70 6 1 1 71 139 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 1 71 139 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 15 49 u a - - MP 72 71 6 76 4 2 2 70 138 -0.777 -2.562 -2.018 -13.454 -8.887 -8.861 -4.007 1.282 -3.473 -9.846 1.784 -8.907 -5.692 -0.471 -3.673 0.900 2.468 -9.157 0.740 -3.750 ML 73 71 6 76 4 1 1 71 139 -0.032 -9.349 -5.915 -8.079 -2.507 -0.873 1.197 -0.021 MR 74 71 6 76 4 1 1 60 128 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 75 71 6 76 4 0 0 61 129 -4.523 -1.897 -0.544 -9.041 IL 76 76 5 76 4 1 1 70 138 -0.511 -1.746 -12.237 -15.975 0.000 0.000 0.000 0.000 IR 77 77 6 77 3 1 1 64 132 -0.393 -2.070 -15.022 0.000 0.000 0.000 0.000 [ MATL 18 ] 26 - g - - - ML 78 77 6 80 3 1 1 12 30 -16.124 -0.000 -14.778 0.472 -1.690 0.600 -0.344 D 79 77 6 80 3 0 0 16 35 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 27 - a - - - ML 81 80 3 83 3 1 1 10 29 -16.124 -0.000 -14.778 0.485 -0.368 0.213 -0.586 D 82 80 3 83 3 0 0 15 34 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 28 - A - - - ML 84 83 3 86 3 1 1 9 27 -16.124 -0.338 -2.260 1.192 -1.633 -0.958 -0.188 D 85 83 3 86 3 0 0 14 32 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 29 - a - - - ML 87 86 3 89 3 1 1 8 26 -15.787 -0.578 -1.599 0.783 -1.924 -0.299 0.267 D 88 86 3 89 3 0 0 7 25 -15.285 -10.798 -0.001 IL 89 89 3 89 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 30 - A - - - ML 90 89 3 92 2 1 1 1 1 * 0.000 1.123 -0.456 -1.630 -0.377 D 91 89 3 92 2 0 0 0 0 * 0.000 IL 92 92 3 92 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 23 ] - - - - - - E 93 92 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME L31-Firmicutes ACC RF03156 DESC L31-Firmicutes ribosomal protein leader LENG 30 MAXL 99 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 9 10:18:02 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED NSEQ 1083 EFFN 293.278076 CKSUM 3760353181 STATS LOCAL MSV -6.8940 0.73866 STATS LOCAL VITERBI -8.0353 0.73866 STATS LOCAL FORWARD -2.8527 0.73866 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.26546 1.62998 1.11007 1.64807 1.38629 1.38629 1.38629 1.38629 0.00018 9.29210 9.29210 1.46634 0.26236 0.00000 * 1 7.56762 0.02315 7.52955 3.82440 1 C - - < 1.38629 1.38629 1.38629 1.38629 0.00018 9.29210 9.29210 1.46634 0.26236 1.09861 0.40547 2 7.57054 4.12349 7.52851 0.01739 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.00018 9.29210 9.29210 1.46634 0.26236 1.09861 0.40547 3 1.72765 0.45960 4.47186 1.71847 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.00018 9.29210 9.29210 1.46634 0.26236 1.09861 0.40547 4 4.80167 4.15676 7.52415 0.02472 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.00063 9.29210 7.52555 1.46634 0.26236 1.09861 0.40547 5 2.91464 3.27183 0.12518 3.66899 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.58610 0.81925 5.89806 1.02172 0.44625 2.06060 0.13625 6 1.43741 2.08334 1.16449 1.12128 13 u - - < 1.38629 1.38629 1.38629 1.38629 0.00983 9.28900 4.63622 1.46634 0.26236 3.60069 0.02768 7 2.12437 0.70995 2.25788 1.25790 14 c - - < 1.38629 1.38629 1.38629 1.38629 0.20666 9.27935 1.67874 1.46634 0.26236 0.40296 1.10364 8 1.85865 1.51349 1.69191 0.82141 15 u - - < 1.38629 1.38629 1.38629 1.38629 0.90547 0.51830 9.08353 1.22234 0.34891 0.00098 6.93051 9 1.06235 2.52933 0.97963 1.61348 26 g - - _ 1.38629 1.38629 1.38629 1.38629 0.00018 9.29210 9.29210 1.46634 0.26236 1.09861 0.40547 10 1.05252 1.64197 1.24622 1.77340 27 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00018 9.29210 9.29210 1.46634 0.26236 1.09861 0.40547 11 0.56831 2.49142 2.04235 1.50959 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.23419 9.29210 1.56689 1.46634 0.26236 1.09861 0.40547 12 0.85127 2.66919 1.59573 1.20045 29 a - - _ 1.38629 1.38629 1.38629 1.38629 0.18620 9.05815 1.77326 1.46634 0.26236 0.31791 1.30073 13 0.62300 1.70173 2.46976 1.62611 30 A - - _ 1.38629 1.38629 1.38629 1.38629 1.38328 0.36342 2.91972 1.47493 0.25980 0.65521 0.73258 14 1.05539 2.96507 1.11292 1.30273 49 a - - > 1.38629 1.38629 1.38629 1.38629 0.03549 9.14674 3.35921 1.46634 0.26236 0.02818 3.58333 15 1.70473 2.22632 0.56252 1.96268 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.00019 9.25798 9.25798 1.46634 0.26236 0.10208 2.33258 16 1.24935 1.72441 1.79687 0.99637 51 u - - > 1.38629 1.38629 1.38629 1.38629 0.67358 0.72133 5.51786 0.83459 0.56926 0.20709 1.67635 17 4.03190 0.08799 7.24572 2.72148 59 C - - > 1.38629 1.38629 1.38629 1.38629 0.00019 9.28774 9.28774 1.46634 0.26236 0.04059 3.22447 18 0.01744 7.65271 4.12445 7.35235 60 A - - > 1.38629 1.38629 1.38629 1.38629 0.00018 9.29210 9.29210 1.46634 0.26236 1.09861 0.40547 19 2.26604 4.52537 0.35755 1.68171 61 G - - > 1.38629 1.38629 1.38629 1.38629 0.00018 9.29210 9.29210 1.46634 0.26236 1.09861 0.40547 20 6.41090 7.64810 0.00277 7.34956 62 G - - > 1.38629 1.38629 1.38629 1.38629 0.00018 9.29210 9.29210 1.46634 0.26236 1.09861 0.40547 21 6.40332 7.63964 0.00279 7.34285 63 G - - > 1.38629 1.38629 1.38629 1.38629 0.01412 4.27347 9.29210 0.01317 4.33602 1.09861 0.40547 22 4.52334 0.01228 7.65507 7.03670 65 C - - : 1.38629 1.38629 1.38629 1.38629 0.43858 1.72181 1.73552 0.16695 1.87238 1.09861 0.40547 23 1.49742 2.96771 0.37112 3.35505 68 G - - : 1.38629 1.38629 1.38629 1.38629 0.00065 9.09826 7.51946 1.46634 0.26236 0.00104 6.86448 24 0.97936 4.13914 0.53831 3.69781 69 G - - : 1.38629 1.38629 1.38629 1.38629 0.00074 9.29175 7.34235 1.46634 0.26236 1.92412 0.15783 25 0.02856 8.23814 3.59284 7.90444 70 A - - : 1.38629 1.38629 1.38629 1.38629 0.00018 9.29119 9.29119 1.46634 0.26236 2.55518 0.08086 26 0.02229 5.19507 4.14030 7.45805 71 A - - : 1.38629 1.38629 1.38629 1.38629 0.00018 9.29119 9.29119 1.46634 0.26236 0.16884 1.86203 27 1.35241 7.15098 0.31119 4.82555 72 G - - : 1.38629 1.38629 1.38629 1.38629 0.00018 9.29210 9.29210 1.46634 0.26236 1.09861 0.40547 28 7.47374 8.70063 0.00107 7.99887 73 G - - : 1.38629 1.38629 1.38629 1.38629 0.00018 9.29210 9.29210 1.46634 0.26236 1.09861 0.40547 29 0.01270 8.36836 4.41937 7.97033 74 A - - : 1.38629 1.38629 1.38629 1.38629 0.00018 9.29210 9.29210 1.46634 0.26236 1.09861 0.40547 30 4.08494 8.42306 0.02993 4.38668 75 G - - : 1.38629 1.38629 1.38629 1.38629 0.00009 9.29201 * 1.46634 0.26236 0.00000 * //