INFERNAL1/a [1.1.4 | Dec 2020] NAME S15-Halobacteria ACC RF03143 DESC S15-Halobacteria ribosomal protein leader STATES 205 NODES 49 CLEN 67 W 254 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 13 13:24:40 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmcalibrate --cpu 8 CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 237 EFFN 3.323410 CKSUM 1027755345 NULL 0.000 0.000 0.000 0.000 GA 49.00 TC 49.80 NC 37.00 EFP7GF -10.3118 0.71907 ECMLC 0.63747 -6.38742 2.67999 1600000 388598 0.003088 ECMGC 0.41014 -16.73686 -3.69505 1600000 84161 0.004753 ECMLI 0.61824 -4.61215 3.83495 1600000 222445 0.005395 ECMGI 0.46715 -10.41472 0.39006 1600000 62252 0.006425 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 254 465 -7.429 -7.636 -0.076 -4.621 IL 1 1 2 1 4 1 21 257 468 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 20 256 467 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - a - - - ML 3 2 3 5 3 1 20 255 466 -8.381 -0.015 -7.035 0.279 -0.755 0.196 0.068 D 4 2 3 5 3 0 14 252 463 -6.560 -2.073 -0.412 IL 5 5 3 5 3 1 20 255 466 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - u - - - ML 6 5 3 8 3 1 20 254 465 -8.381 -0.015 -7.035 -0.158 -0.152 -0.925 0.746 D 7 5 3 8 3 0 14 251 463 -6.560 -1.159 -0.885 IL 8 8 3 8 3 1 18 254 465 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 1 19 253 464 -8.412 -0.015 -7.066 -0.671 -1.447 1.268 -0.746 D 10 8 3 11 3 0 12 250 461 -6.219 -1.732 -0.545 IL 11 11 3 11 3 1 18 253 464 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - G - - - ML 12 11 3 14 3 1 18 252 463 -8.412 -0.015 -7.066 -1.716 -3.303 1.784 -2.726 D 13 11 3 14 3 0 11 249 460 -6.219 -1.732 -0.545 IL 14 14 3 14 3 1 17 252 463 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - G - - - ML 15 14 3 17 3 1 17 251 462 -8.412 -0.015 -7.066 -1.617 -3.231 1.769 -2.658 D 16 14 3 17 3 0 10 248 459 -6.219 -1.732 -0.545 IL 17 17 3 17 3 1 16 251 462 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 17 250 461 -8.412 -0.015 -7.066 1.325 -1.669 -0.555 -1.003 D 19 17 3 20 3 0 9 247 458 -6.219 -1.732 -0.545 IL 20 20 3 20 3 1 15 250 461 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - A - - - ML 21 20 3 23 3 1 16 249 460 -8.412 -0.015 -7.066 1.706 -1.980 -2.149 -1.946 D 22 20 3 23 3 0 8 246 457 -6.219 -1.592 -0.611 IL 23 23 3 23 3 1 14 249 460 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - c - - - ML 24 23 3 26 3 1 15 248 459 -8.416 -0.015 -7.070 -0.205 0.797 -0.768 -0.309 D 25 23 3 26 3 0 7 245 456 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 13 248 459 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - a - - - ML 27 26 3 29 5 1 14 247 458 -7.495 -0.029 -7.310 -7.522 -8.414 0.770 0.020 -0.873 -0.445 D 28 26 3 29 5 0 6 244 456 -4.959 -0.803 -4.221 -2.596 -2.508 IL 29 29 3 29 5 1 11 247 458 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 10 158 G C - - MP 30 29 3 34 6 2 14 246 457 -9.310 -9.250 -0.018 -8.026 -8.306 -8.701 -3.075 -2.537 -3.643 1.498 -4.446 -4.349 0.169 -4.155 -3.874 3.069 -4.230 0.626 -0.098 -3.612 -1.794 -2.595 ML 31 29 3 34 6 1 8 244 455 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 3 34 6 1 7 243 454 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 3 34 6 0 3 239 450 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 10 245 456 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 10 245 456 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 11 157 C G - - MP 36 35 6 40 6 2 13 244 455 -9.310 -9.250 -0.018 -8.026 -8.306 -8.701 -5.320 -5.350 -4.865 -1.509 -3.410 -5.161 3.718 -4.301 -4.951 -1.354 -5.122 -3.370 0.026 -5.312 -0.818 -3.762 ML 37 35 6 40 6 1 7 242 453 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 1 6 241 453 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 0 3 238 449 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 9 243 454 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 9 243 454 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 12 156 A U - - MP 42 41 6 46 6 2 11 242 453 -9.310 -9.250 -0.018 -8.026 -8.306 -8.701 -4.418 -3.253 -4.424 3.620 -5.577 -6.480 -1.214 -4.492 -4.275 0.429 -4.883 -0.074 -1.430 -5.338 -3.119 -3.215 ML 43 41 6 46 6 1 6 240 451 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 5 240 451 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 3 237 449 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 8 241 452 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 8 241 452 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 13 155 C G - - MP 48 47 6 52 4 2 9 240 451 -7.429 -7.636 -0.038 -6.050 -5.415 -5.442 -4.944 -1.604 -3.480 -5.228 3.741 -4.382 -5.038 -1.453 -5.193 -3.460 -0.062 -5.404 -1.013 -3.848 ML 49 47 6 52 4 1 6 239 450 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 4 1 4 238 449 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 51 47 6 52 4 0 2 237 448 -4.568 -4.250 -2.265 -0.520 IL 52 52 5 52 4 1 7 240 451 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 53 53 6 53 3 1 7 239 451 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - G - - - ML 54 53 6 56 3 1 8 238 449 -8.781 -0.014 -7.098 -0.092 -2.204 1.337 -1.647 D 55 53 6 56 3 0 2 236 447 -5.620 -0.734 -1.403 IL 56 56 3 56 3 1 5 238 449 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 154 - A - - MR 57 56 3 59 5 1 7 237 448 -7.495 -0.029 -7.310 -7.522 -8.414 1.155 -0.618 -1.033 -0.659 D 58 56 3 59 5 0 1 234 446 -5.352 -0.707 -2.978 -4.409 -2.404 IR 59 59 3 59 5 1 4 237 448 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 15 153 g c - - MP 60 59 3 64 6 2 8 236 447 -9.310 -9.250 -0.018 -8.026 -8.306 -8.701 -0.928 -1.264 -1.777 1.156 -2.017 -2.707 1.238 -2.312 0.274 1.501 -2.481 0.778 1.082 -2.084 -0.220 -1.208 ML 61 59 3 64 6 1 3 233 445 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 3 64 6 1 2 233 444 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 3 64 6 0 0 228 439 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 3 235 446 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 4 235 446 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 16 152 C G - - MP 66 65 6 70 6 2 8 234 445 -9.310 -9.250 -0.018 -8.026 -8.306 -8.701 -4.546 -4.533 -4.256 -0.675 -2.930 -4.682 3.411 -3.732 -4.278 -0.493 -4.580 -2.496 1.158 -4.600 -0.020 -3.098 ML 67 65 6 70 6 1 2 232 443 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 2 231 442 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 0 226 437 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 3 233 444 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 3 233 444 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 17 151 C G - - MP 72 71 6 76 6 2 7 232 443 -9.310 -9.250 -0.018 -8.026 -8.306 -8.701 -4.678 -4.671 -4.345 -0.811 -2.978 -4.737 3.469 -3.795 -4.377 -0.632 -4.654 -2.641 1.182 -4.712 -0.556 -3.192 ML 73 71 6 76 6 1 2 230 441 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 2 229 440 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 225 436 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 3 231 442 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 3 231 442 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 18 150 G C - - MP 78 77 6 82 6 2 7 230 441 -9.310 -9.250 -0.018 -8.026 -8.306 -8.701 -4.771 -3.129 -4.815 0.350 -5.741 -4.867 -0.931 -5.244 -4.491 3.584 -4.822 0.243 -1.204 -4.504 -2.962 -3.703 ML 79 77 6 82 6 1 2 228 439 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 2 227 439 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 223 435 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 3 229 440 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 3 229 440 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 19 149 C G - - MP 84 83 6 88 6 2 6 228 439 -9.310 -9.250 -0.018 -8.026 -8.306 -8.701 -4.629 -4.640 -4.305 -0.800 -2.948 -4.700 3.447 -3.763 -4.337 -0.631 -4.619 -2.636 0.668 -4.668 0.597 -3.159 ML 85 83 6 88 6 1 2 226 437 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 2 226 437 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 222 433 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 2 227 438 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 3 227 438 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 20 148 A U - - MP 90 89 6 94 6 2 5 226 437 -9.310 -9.250 -0.018 -8.026 -8.306 -8.701 -4.142 -3.306 -4.081 3.426 -4.270 -5.274 0.025 -4.150 -4.127 0.922 -4.636 -0.873 -0.404 -4.537 -1.233 -3.005 ML 91 89 6 94 6 1 1 224 436 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 224 435 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 221 433 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 2 225 436 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 2 225 436 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 21 147 a u - - MP 96 95 6 100 4 2 3 224 435 -7.429 -7.636 -0.038 -6.050 -2.371 -2.378 -2.511 2.599 -1.909 -3.360 1.176 -2.785 -1.213 1.227 -3.143 -0.709 0.926 -2.656 -0.420 -1.695 ML 97 95 6 100 4 1 1 223 434 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 1 222 433 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 221 432 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 2 224 435 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 224 435 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 22 - A - - - ML 102 101 6 104 3 1 2 222 433 -8.416 -0.015 -7.070 1.416 -1.096 -1.276 -1.149 D 103 101 6 104 3 0 0 220 431 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 223 434 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 23 - U - - - ML 105 104 3 107 3 1 2 221 432 -8.781 -0.014 -7.098 -2.346 -2.198 -3.111 1.795 D 106 104 3 107 3 0 0 219 431 -5.620 -0.734 -1.403 IL 107 107 3 107 3 1 1 221 433 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 146 - A - - MR 108 107 3 110 5 1 1 220 431 -7.495 -0.029 -7.310 -7.522 -8.414 1.858 -3.281 -2.827 -2.917 D 109 107 3 110 5 0 0 218 429 -5.352 -0.707 -2.978 -4.409 -2.404 IR 110 110 3 110 5 1 1 220 431 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 24 145 C G - - MP 111 110 3 115 6 2 2 219 430 -9.310 -9.250 -0.018 -8.026 -8.306 -8.701 -5.557 -5.547 -5.066 -1.719 -3.600 -5.343 3.772 -4.512 -5.168 -1.586 -5.301 -3.529 -0.212 -5.555 -1.351 -3.981 ML 112 110 3 115 6 1 1 217 429 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 3 115 6 1 1 217 428 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 3 115 6 0 0 214 425 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 218 430 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 218 429 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 25 144 c g - - MP 117 116 6 121 4 2 2 217 428 -7.429 -7.636 -0.038 -6.050 -3.909 -3.915 -3.807 -0.193 -2.083 -4.393 2.745 -3.470 -3.814 -0.046 -4.217 -1.952 1.316 -4.069 1.921 -2.703 ML 118 116 6 121 4 1 1 216 427 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 4 1 1 215 426 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 120 116 6 121 4 0 0 214 425 -4.568 -4.250 -2.265 -0.520 IL 121 121 5 121 4 1 1 217 428 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 122 122 6 122 3 1 1 217 428 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 26 - G - - - ML 123 122 6 125 3 1 1 215 426 -8.416 -0.015 -7.070 -2.501 -3.841 1.866 -3.219 D 124 122 6 125 3 0 0 213 424 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 216 427 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 27 - A - - - ML 126 125 3 128 3 1 1 214 425 -8.416 -0.015 -7.070 1.858 -3.281 -2.827 -2.917 D 127 125 3 128 3 0 0 212 423 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 215 426 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 28 - C - - - ML 129 128 3 131 3 1 1 213 424 -8.416 -0.015 -7.070 -2.837 1.823 -3.653 -2.044 D 130 128 3 131 3 0 0 211 422 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 214 425 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 29 - u - - - ML 132 131 3 134 3 1 1 212 423 -8.416 -0.015 -7.070 -0.280 -0.709 -0.531 0.906 D 133 131 3 134 3 0 0 210 421 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 213 424 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 30 - C - - - ML 135 134 3 137 3 1 1 211 422 -3.482 -0.147 -7.098 -0.820 1.128 -1.257 -0.270 D 136 134 3 137 3 0 0 209 420 -5.620 -0.734 -1.403 IL 137 137 3 137 3 1 1 211 422 -2.393 -0.379 -4.631 0.000 0.000 0.000 0.000 [ MATR 33 ] - 143 - G - - MR 138 137 3 140 3 1 1 210 421 -6.248 -0.030 -7.098 -2.501 -3.841 1.866 -3.219 D 139 137 3 140 3 0 0 207 419 -6.390 -1.568 -0.620 IR 140 140 3 140 3 1 1 210 422 -1.993 -0.524 -4.231 0.000 0.000 0.000 0.000 [ MATR 34 ] - 141 - U - - MR 141 140 3 143 3 1 1 209 420 -3.134 -0.186 -7.098 -0.891 -0.359 -1.705 1.248 D 142 140 3 143 3 0 0 206 418 -6.390 -1.568 -0.620 IR 143 143 3 143 3 1 1 209 420 -2.500 -0.348 -4.739 0.000 0.000 0.000 0.000 [ MATR 35 ] - 139 - U - - MR 144 143 3 146 5 1 1 208 419 -6.398 -0.039 -7.310 -7.522 -8.414 -2.346 -2.198 -3.111 1.795 D 145 143 3 146 5 0 0 205 416 -5.352 -0.707 -2.978 -4.409 -2.404 IR 146 146 3 146 5 1 1 208 419 -2.442 -0.483 -5.953 -4.121 -5.227 0.000 0.000 0.000 0.000 [ MATP 36 ] 32 137 G C - - MP 147 146 3 151 6 2 2 207 418 -9.310 -9.250 -0.018 -8.026 -8.306 -8.701 -5.615 -3.521 -5.853 -0.413 -6.445 -5.018 -1.593 -6.117 -4.852 3.792 -5.136 -1.268 -1.960 -5.026 -3.687 -4.718 ML 148 146 3 151 6 1 1 204 415 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 3 151 6 1 1 204 415 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 3 151 6 0 0 197 408 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 206 417 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 206 417 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 33 136 C G - - MP 153 152 6 157 6 2 2 205 416 -9.310 -9.250 -0.018 -8.026 -8.306 -8.701 -4.139 -4.088 -3.983 -0.243 -2.818 -4.534 3.031 -3.556 -3.977 -0.053 -4.357 -2.014 1.983 -4.263 0.086 -2.817 ML 154 152 6 157 6 1 1 202 413 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 6 1 1 202 413 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 6 157 6 0 0 195 406 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 204 415 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 204 415 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 34 135 C G - - MP 159 158 6 163 6 2 2 203 414 -9.310 -9.250 -0.023 -8.026 -8.306 -7.480 -3.706 -3.629 -3.694 0.149 -2.640 -4.397 3.149 -2.716 -3.674 0.445 -4.133 -1.564 1.305 -3.906 -0.342 -1.933 ML 160 158 6 163 6 1 1 200 412 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 6 1 1 201 412 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 6 163 6 0 0 192 403 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 202 413 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 202 413 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 35 134 g c - - MP 165 164 6 169 6 2 2 201 412 -9.306 -9.245 -0.087 -6.678 -5.351 -5.558 -3.367 -2.512 -3.333 1.644 -3.576 -4.034 1.184 -3.705 -3.559 2.721 -3.952 -0.124 0.594 -3.313 -0.890 -2.318 ML 166 164 6 169 6 1 1 198 410 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 6 1 1 199 410 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 168 164 6 169 6 0 0 189 400 -9.136 -7.834 -3.631 -4.314 -4.331 -0.298 IL 169 169 5 169 6 1 1 200 411 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 170 170 6 170 5 1 1 200 411 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 36 133 c g - - MP 171 170 6 175 6 2 2 199 411 -9.238 -9.177 -0.103 -5.524 -5.962 -5.168 -2.103 -2.406 -2.523 0.950 -2.225 -3.356 2.350 -2.669 -2.186 1.205 -2.777 -0.405 1.545 -2.662 0.104 -1.617 ML 172 170 6 175 6 1 1 196 408 -6.375 -6.721 -1.144 -1.130 -6.571 -4.100 0.214 -0.006 -0.447 0.151 MR 173 170 6 175 6 1 1 198 410 -7.347 -6.076 -1.080 -6.054 -1.188 -4.268 0.656 -0.714 -0.106 -0.175 D 174 170 6 175 6 0 0 185 396 -9.563 -8.261 -4.058 -4.740 -4.758 -0.216 IL 175 175 5 175 6 1 1 199 410 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 176 176 6 176 5 1 1 199 410 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 37 132 g c - - MP 177 176 6 181 6 2 2 198 409 -9.198 -9.137 -0.141 -7.370 -4.195 -5.121 -2.853 -2.554 -2.932 1.052 -2.124 -3.719 1.915 -3.077 -2.740 2.283 -3.506 -0.502 1.171 -3.023 -0.242 -1.944 ML 178 176 6 181 6 1 1 194 405 -6.581 -6.927 -1.207 -1.033 -6.777 -4.306 0.160 -0.478 -0.018 0.236 MR 179 176 6 181 6 1 1 198 409 -7.203 -5.932 -1.711 -5.910 -0.743 -4.124 0.218 0.040 -0.524 0.155 D 180 176 6 181 6 0 0 182 392 -9.972 -8.671 -4.468 -5.150 -5.167 -0.159 IL 181 181 5 181 6 1 1 197 408 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 182 182 6 182 5 1 1 197 408 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 38 131 c g - - MP 183 182 6 187 4 2 2 196 407 -1.659 -7.131 -0.611 -5.545 -2.823 -2.637 -2.919 0.938 -2.470 -3.717 2.336 -2.946 -2.938 1.634 -3.140 -0.424 1.395 -3.044 0.138 -1.888 ML 184 182 6 187 4 1 1 189 400 -2.616 -4.086 -0.653 -2.816 0.140 -0.249 -0.486 0.425 MR 185 182 6 187 4 1 1 199 410 -1.042 -4.746 -2.613 -1.674 0.048 0.464 -0.864 0.053 D 186 182 6 187 4 0 0 178 388 -5.756 -5.438 -0.616 -1.708 IL 187 187 5 187 4 1 1 205 417 -0.135 -7.383 -3.599 -9.868 0.000 0.000 0.000 0.000 IR 188 188 6 188 3 1 1 178 387 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 73 - u - - - ML 189 188 6 191 3 1 1 176 385 -8.416 -0.015 -7.070 0.082 -0.198 -0.181 0.248 D 190 188 6 191 3 0 0 175 383 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 177 386 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 74 - u - - - ML 192 191 3 194 3 1 1 176 384 -8.416 -0.015 -7.070 0.134 0.144 -0.796 0.289 D 193 191 3 194 3 0 0 174 383 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 176 385 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 75 - u - - - ML 195 194 3 197 3 1 1 174 383 -8.416 -0.271 -2.569 -0.227 0.132 -0.897 0.597 D 196 194 3 197 3 0 0 174 383 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 175 384 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 76 - u - - - ML 198 197 3 200 3 1 1 173 382 -1.474 -1.249 -2.190 -0.459 -0.104 -0.866 0.843 D 199 197 3 200 3 0 0 174 383 -1.239 -3.067 -1.130 IL 200 200 3 200 3 1 1 184 393 -0.127 -3.827 -6.154 0.000 0.000 0.000 0.000 [ MATL 47 ] 130 - u - - - ML 201 200 3 203 2 1 1 1 1 * 0.000 -0.386 -0.188 -0.764 0.822 D 202 200 3 203 2 0 0 0 0 * 0.000 IL 203 203 3 203 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 48 ] - - - - - - E 204 203 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME S15-Halobacteria ACC RF03143 DESC S15-Halobacteria ribosomal protein leader LENG 67 MAXL 336 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 13 13:24:40 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED NSEQ 237 EFFN 6.426224 CKSUM 1027755345 STATS LOCAL MSV -7.8863 0.71907 STATS LOCAL VITERBI -8.9205 0.71907 STATS LOCAL FORWARD -3.7533 0.71907 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.53204 1.34601 1.17708 1.53502 1.38629 1.38629 1.38629 1.38629 0.04708 4.50314 3.35488 1.46634 0.26236 0.00000 * 1 1.19627 2.00954 1.17215 1.37071 1 g - - : 1.38629 1.38629 1.38629 1.38629 0.02295 4.47901 4.47901 1.46634 0.26236 1.63952 0.21576 2 1.56270 1.47429 2.11385 0.81935 2 u - - : 1.38629 1.38629 1.38629 1.38629 0.02295 4.47901 4.47901 1.46634 0.26236 0.49126 0.94638 3 2.14232 2.64007 0.36926 2.12015 3 G - - : 1.38629 1.38629 1.38629 1.38629 0.02235 4.50510 4.50510 1.46634 0.26236 1.09861 0.40547 4 2.99596 4.37850 0.08485 3.97284 4 G - - : 1.38629 1.38629 1.38629 1.38629 0.02235 4.50510 4.50510 1.46634 0.26236 1.09861 0.40547 5 2.89668 4.31288 0.09270 3.91538 5 G - - : 1.38629 1.38629 1.38629 1.38629 0.02235 4.50510 4.50510 1.46634 0.26236 1.09861 0.40547 6 0.35773 2.98687 1.81089 2.44432 6 A - - : 1.38629 1.38629 1.38629 1.38629 0.02235 4.50510 4.50510 1.46634 0.26236 1.09861 0.40547 7 0.11981 3.04560 3.47097 3.37383 7 A - - : 1.38629 1.38629 1.38629 1.38629 0.02235 4.50510 4.50510 1.46634 0.26236 1.09861 0.40547 8 1.65350 0.67701 1.98464 1.81364 8 C - - : 1.38629 1.38629 1.38629 1.38629 0.02229 4.50807 4.50807 1.46634 0.26236 1.09861 0.40547 9 0.76365 1.28805 2.14094 1.96124 9 a - - : 1.38629 1.38629 1.38629 1.38629 0.02229 4.50807 4.50807 1.46634 0.26236 1.09861 0.40547 10 1.63298 2.84258 0.38845 2.68427 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.02229 4.50807 4.50807 1.46634 0.26236 1.09861 0.40547 11 4.34547 0.09046 4.23071 2.83052 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.02229 4.50807 4.50807 1.46634 0.26236 1.09861 0.40547 12 0.11951 4.46734 2.46134 4.14500 12 A - - < 1.38629 1.38629 1.38629 1.38629 0.02229 4.50807 4.50807 1.46634 0.26236 1.09861 0.40547 13 4.43215 0.07753 4.33670 3.00307 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.02229 4.50807 4.50807 1.46634 0.26236 1.09861 0.40547 14 1.51245 3.46987 0.34986 3.12985 14 G - - - 1.38629 1.38629 1.38629 1.38629 0.02229 4.50807 4.50807 1.46634 0.26236 1.09861 0.40547 15 1.54979 1.90146 0.78773 1.69565 15 g - - < 1.38629 1.38629 1.38629 1.38629 0.02229 4.50807 4.50807 1.46634 0.26236 1.09861 0.40547 16 3.63156 0.26860 3.44448 1.73075 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.02229 4.50807 4.50807 1.46634 0.26236 1.09861 0.40547 17 3.73291 0.23720 3.56255 1.83963 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.02229 4.50807 4.50807 1.46634 0.26236 1.09861 0.40547 18 2.78524 3.87987 0.11207 3.74454 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.02229 4.50807 4.50807 1.46634 0.26236 1.09861 0.40547 19 3.77172 0.24585 3.61536 1.78355 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.02229 4.50807 4.50807 1.46634 0.26236 1.09861 0.40547 20 0.16552 3.60941 2.47871 3.17902 20 A - - < 1.38629 1.38629 1.38629 1.38629 0.02229 4.50807 4.50807 1.46634 0.26236 1.09861 0.40547 21 0.71884 1.92502 1.57473 1.83418 21 a - - < 1.38629 1.38629 1.38629 1.38629 0.02229 4.50807 4.50807 1.46634 0.26236 1.09861 0.40547 22 0.28864 2.25448 2.55564 2.68604 22 A - - - 1.38629 1.38629 1.38629 1.38629 0.02229 4.50807 4.50807 1.46634 0.26236 1.09861 0.40547 23 3.83681 3.62070 4.38330 0.06274 23 U - - - 1.38629 1.38629 1.38629 1.38629 0.02229 4.50807 4.50807 1.46634 0.26236 1.09861 0.40547 24 4.60806 0.05950 4.51550 3.30088 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.02229 4.50807 4.50807 1.46634 0.26236 1.09861 0.40547 25 3.30525 0.73893 3.10131 0.81940 25 c - - < 1.38629 1.38629 1.38629 1.38629 0.02229 4.50807 4.50807 1.46634 0.26236 1.09861 0.40547 26 3.88743 4.89193 0.04112 4.40000 26 G - - - 1.38629 1.38629 1.38629 1.38629 0.02229 4.50807 4.50807 1.46634 0.26236 1.09861 0.40547 27 0.04135 4.50450 4.13551 4.30883 27 A - - - 1.38629 1.38629 1.38629 1.38629 0.02229 4.50807 4.50807 1.46634 0.26236 1.09861 0.40547 28 4.26352 0.05099 4.72283 3.62126 28 C - - - 1.38629 1.38629 1.38629 1.38629 0.02229 4.50807 4.50807 1.46634 0.26236 1.09861 0.40547 29 1.69643 2.01218 1.74769 0.67572 29 U - - - 1.38629 1.38629 1.38629 1.38629 0.02229 4.50807 4.50807 1.46634 0.26236 1.09861 0.40547 30 2.29666 0.44933 2.42346 1.75601 30 C - - - 1.38629 1.38629 1.38629 1.38629 0.13978 2.12504 4.50807 0.17531 1.82758 1.09861 0.40547 31 3.44441 4.43404 0.05771 4.39941 32 G - - < 1.38629 1.38629 1.38629 1.38629 0.02229 4.50807 4.50807 1.46634 0.26236 1.09861 0.40547 32 3.25545 0.52959 3.03111 1.12600 33 C - - < 1.38629 1.38629 1.38629 1.38629 0.02229 4.50807 4.50807 1.46634 0.26236 1.09861 0.40547 33 2.75123 0.43485 2.40839 1.61530 34 C - - < 1.38629 1.38629 1.38629 1.38629 0.03023 4.50807 3.97591 1.46634 0.26236 1.09861 0.40547 34 1.45624 2.01493 0.65202 2.18421 35 G - - < 1.38629 1.38629 1.38629 1.38629 0.12770 4.50030 2.21845 1.46634 0.26236 1.30904 0.31482 35 1.91462 0.95571 1.61626 1.31148 36 c - - < 1.38629 1.38629 1.38629 1.38629 0.13048 4.39752 2.20713 1.46634 0.26236 0.78995 0.60489 36 1.92420 1.32887 0.93047 1.63547 37 g - - < 1.38629 1.38629 1.38629 1.38629 0.09846 4.35649 2.51399 1.46634 0.26236 1.46110 0.26394 37 2.02154 0.97483 1.42938 1.38296 38 c - - < 1.38629 1.38629 1.38629 1.38629 0.72119 0.69204 4.32184 2.61742 0.07579 0.11494 2.22025 38 1.36852 1.49604 1.47145 1.23132 73 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02229 4.50807 4.50807 1.46634 0.26236 1.09861 0.40547 39 1.30962 1.21235 2.01392 1.20693 74 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02229 4.50807 4.50807 1.46634 0.26236 1.09861 0.40547 40 1.64422 1.22123 2.09108 0.94568 75 u - - _ 1.38629 1.38629 1.38629 1.38629 0.09814 4.50807 2.49549 1.46634 0.26236 1.09861 0.40547 41 1.91192 1.42335 2.06797 0.72390 76 u - - _ 1.38629 1.38629 1.38629 1.38629 1.36817 0.67555 1.44160 2.81562 0.06173 1.88486 0.16470 42 1.84920 1.50618 1.98957 0.72541 130 u - - _ 1.38629 1.38629 1.38629 1.38629 0.10964 4.18618 2.42318 1.46634 0.26236 0.74113 0.64736 43 1.69448 1.48916 0.88647 1.72240 131 g - - > 1.38629 1.38629 1.38629 1.38629 0.05657 4.29420 3.18567 1.46634 0.26236 1.11724 0.39628 44 1.85267 1.01030 1.21073 1.70874 132 c - - > 1.38629 1.38629 1.38629 1.38629 0.04378 4.34305 3.51188 1.46634 0.26236 0.52113 0.90103 45 1.49247 1.87860 0.82601 1.68964 133 g - - > 1.38629 1.38629 1.38629 1.38629 0.02392 4.43823 4.43823 1.46634 0.26236 0.35140 1.21639 46 2.49381 0.74023 1.83997 1.26735 134 c - - > 1.38629 1.38629 1.38629 1.38629 0.02246 4.50030 4.50030 1.46634 0.26236 0.77688 0.61589 47 1.86751 2.56943 0.39456 2.35459 135 G - - > 1.38629 1.38629 1.38629 1.38629 0.02229 4.50807 4.50807 1.46634 0.26236 1.09861 0.40547 48 1.31586 3.20194 0.44308 3.01557 136 G - - > 1.38629 1.38629 1.38629 1.38629 0.02229 4.50807 4.50807 1.46634 0.26236 1.09861 0.40547 49 4.54692 0.07001 4.33092 3.12667 137 C - - > 1.38629 1.38629 1.38629 1.38629 0.03076 3.94893 4.50807 0.90923 0.51556 1.09861 0.40547 50 3.83681 3.62070 4.38330 0.06274 139 U - - - 1.38629 1.38629 1.38629 1.38629 0.17532 1.89851 4.50807 0.14115 2.02769 1.09861 0.40547 51 2.37446 1.68013 2.99516 0.39965 141 U - - - 1.38629 1.38629 1.38629 1.38629 0.03622 3.70715 4.50807 0.73924 0.64909 1.09861 0.40547 52 3.88743 4.89193 0.04112 4.40000 143 G - - - 1.38629 1.38629 1.38629 1.38629 0.02229 4.50807 4.50807 1.46634 0.26236 1.09861 0.40547 53 1.92533 3.26962 0.26178 3.06891 144 G - - > 1.38629 1.38629 1.38629 1.38629 0.02229 4.50807 4.50807 1.46634 0.26236 1.09861 0.40547 54 3.59329 4.69279 0.04986 4.42520 145 G - - > 1.38629 1.38629 1.38629 1.38629 0.02229 4.50807 4.50807 1.46634 0.26236 1.09861 0.40547 55 0.04135 4.50450 4.13551 4.30883 146 A - - - 1.38629 1.38629 1.38629 1.38629 0.02229 4.50807 4.50807 1.46634 0.26236 1.09861 0.40547 56 1.80223 1.88258 1.77530 0.66662 147 U - - > 1.38629 1.38629 1.38629 1.38629 0.02229 4.50807 4.50807 1.46634 0.26236 1.09861 0.40547 57 3.79161 2.72257 3.08472 0.14388 148 U - - > 1.38629 1.38629 1.38629 1.38629 0.02229 4.50807 4.50807 1.46634 0.26236 1.09861 0.40547 58 2.64868 3.76626 0.13151 3.52847 149 G - - > 1.38629 1.38629 1.38629 1.38629 0.02229 4.50807 4.50807 1.46634 0.26236 1.09861 0.40547 59 3.94277 0.19782 3.71329 1.99740 150 C - - > 1.38629 1.38629 1.38629 1.38629 0.02229 4.50807 4.50807 1.46634 0.26236 1.09861 0.40547 60 2.01884 3.71852 0.20776 3.48944 151 G - - > 1.38629 1.38629 1.38629 1.38629 0.02229 4.50807 4.50807 1.46634 0.26236 1.09861 0.40547 61 2.07513 3.60527 0.20637 3.38888 152 G - - > 1.38629 1.38629 1.38629 1.38629 0.02229 4.50807 4.50807 1.46634 0.26236 1.09861 0.40547 62 1.27353 1.46064 1.66953 1.20485 153 u - - > 1.38629 1.38629 1.38629 1.38629 0.02229 4.50807 4.50807 1.46634 0.26236 1.09861 0.40547 63 0.46454 1.84200 2.32379 2.16128 154 A - - - 1.38629 1.38629 1.38629 1.38629 0.02229 4.50807 4.50807 1.46634 0.26236 1.09861 0.40547 64 3.37508 4.47916 0.06211 4.22250 155 G - - > 1.38629 1.38629 1.38629 1.38629 0.02229 4.50807 4.50807 1.46634 0.26236 1.09861 0.40547 65 4.31920 3.16072 4.24120 0.07267 156 U - - > 1.38629 1.38629 1.38629 1.38629 0.02229 4.50807 4.50807 1.46634 0.26236 1.09861 0.40547 66 3.26143 4.36767 0.06974 4.11354 157 G - - > 1.38629 1.38629 1.38629 1.38629 0.02229 4.50807 4.50807 1.46634 0.26236 1.09861 0.40547 67 2.87481 0.54147 2.64671 1.23512 158 C - - > 1.38629 1.38629 1.38629 1.38629 0.01121 4.49699 * 1.46634 0.26236 0.00000 * //