INFERNAL1/a [1.1.4 | Dec 2020] NAME L2-Alphaproteobacteria ACC RF03142 DESC L2-Alphaproteobacteria ribosomal protein leader STATES 216 NODES 60 CLEN 69 W 311 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 13 13:21:57 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmcalibrate --cpu 8 CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 452 EFFN 6.941803 CKSUM 829956238 NULL 0.000 0.000 0.000 0.000 GA 37.80 TC 37.80 NC 37.60 EFP7GF -13.4172 0.71887 ECMLC 0.76634 -8.14975 0.34291 1600000 804790 0.001491 ECMGC 0.41867 -19.26406 -6.66947 1600000 77998 0.005128 ECMLI 0.67763 -8.15632 0.96090 1600000 578466 0.002074 ECMGI 0.42343 -12.89420 -1.20444 1600000 56457 0.007085 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 311 588 -8.071 -9.316 -0.035 -5.726 IL 1 1 2 1 4 1 25 313 590 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 26 313 590 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 256 - A - - MR 3 2 3 5 3 1 25 312 589 -9.514 -0.057 -4.748 1.946 -4.638 -4.100 -4.357 D 4 2 3 5 3 0 21 309 587 -6.405 -1.582 -0.612 IR 5 5 3 5 3 1 25 312 589 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 255 - A - - MR 6 5 3 8 3 2 25 311 588 -6.499 -0.023 -7.784 1.657 -2.305 -1.344 -1.996 D 7 5 3 8 3 0 20 309 586 -7.087 -0.774 -1.294 IR 8 8 3 8 3 1 24 311 588 -2.020 -0.512 -4.259 0.000 0.000 0.000 0.000 [ MATR 3 ] - 253 - A - - MR 9 8 3 11 3 2 24 310 587 -9.514 -0.008 -7.832 1.606 -1.828 -1.870 -1.320 D 10 8 3 11 3 0 19 307 584 -6.405 -1.582 -0.612 IR 11 11 3 11 3 1 23 310 587 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 252 - G - - MR 12 11 3 14 3 2 23 309 586 -9.514 -0.008 -7.832 -3.082 -3.774 1.898 -3.627 D 13 11 3 14 3 0 18 306 583 -6.405 -1.582 -0.612 IR 14 14 3 14 3 1 22 309 586 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 251 - A - - MR 15 14 3 17 3 1 22 308 585 -9.514 -0.022 -6.204 1.930 -4.368 -3.571 -4.132 D 16 14 3 17 3 0 18 305 582 -6.405 -1.582 -0.612 IR 17 17 3 17 3 1 22 308 585 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 250 - C - - MR 18 17 3 20 3 1 22 307 584 -9.501 -0.008 -7.819 -3.291 1.885 -3.972 -2.823 D 19 17 3 20 3 0 17 304 582 -6.630 -1.188 -0.860 IR 20 20 3 20 3 1 21 307 584 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 249 - A - - MR 21 20 3 23 3 1 21 306 583 -9.515 -0.008 -7.833 1.896 -3.789 -3.576 -3.040 D 22 20 3 23 3 0 16 303 580 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 20 306 583 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 248 - G - - MR 24 23 3 26 3 1 20 305 582 -9.515 -0.008 -7.833 -3.729 -5.193 1.946 -4.467 D 25 23 3 26 3 0 15 302 579 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 19 305 582 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 247 - A - - MR 27 26 3 29 3 1 19 304 581 -6.042 -0.033 -7.046 1.946 -4.640 -4.101 -4.358 D 28 26 3 29 3 0 14 301 578 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 18 304 581 -2.064 -0.494 -4.302 0.000 0.000 0.000 0.000 [ MATR 10 ] - 245 - A - - MR 30 29 3 32 3 1 18 303 580 -9.511 -0.008 -7.828 1.946 -4.632 -4.094 -4.351 D 31 29 3 32 3 0 14 300 577 -6.473 -1.417 -0.703 IR 32 32 3 32 3 1 17 303 580 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 244 - G - - MR 33 32 3 35 3 1 17 302 579 -9.515 -0.008 -7.833 -3.486 -5.088 1.939 -4.387 D 34 32 3 35 3 0 13 299 576 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 17 302 579 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 243 - G - - MR 36 35 3 38 3 1 16 301 578 -9.515 -0.008 -7.833 -3.729 -5.193 1.946 -4.467 D 37 35 3 38 3 0 12 298 575 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 16 301 578 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 242 - C - - MR 39 38 3 41 3 1 15 300 577 -9.515 -0.024 -6.046 -4.169 1.924 -4.812 -3.126 D 40 38 3 41 3 0 12 297 574 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 15 300 577 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 241 - A - - MR 42 41 3 44 3 1 14 299 576 -9.500 -0.008 -7.817 1.927 -4.313 -3.496 -4.078 D 43 41 3 44 3 0 11 296 574 -6.653 -1.831 -0.496 IR 44 44 3 44 3 1 14 299 576 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 240 - A - - MR 45 44 3 47 3 1 13 298 575 -9.500 -0.139 -3.462 1.736 -2.251 -1.909 -2.374 D 46 44 3 47 3 0 11 296 573 -6.653 -1.831 -0.496 IR 47 47 3 47 3 1 14 298 575 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 239 - A - - MR 48 47 3 50 3 1 13 297 574 -1.590 -0.709 -4.160 1.561 -1.872 -2.219 -0.832 D 49 47 3 50 3 0 10 295 572 -7.871 -0.665 -1.454 IR 50 50 3 50 3 1 13 297 574 -3.595 -0.152 -5.833 0.000 0.000 0.000 0.000 [ MATR 17 ] - 237 - C - - MR 51 50 3 53 3 1 12 296 573 -9.417 -0.037 -5.381 -2.235 1.791 -3.542 -2.058 D 52 50 3 53 3 0 9 293 570 -7.546 -1.842 -0.483 IR 53 53 3 53 3 1 12 296 573 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 236 - G - - MR 54 53 3 56 3 1 11 295 572 -9.413 -0.059 -4.695 -1.726 -2.858 1.759 -2.516 D 55 53 3 56 3 0 9 292 570 -7.579 -2.756 -0.240 IR 56 56 3 56 3 1 11 295 572 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 235 - A - - MR 57 56 3 59 3 1 10 294 571 -2.294 -0.723 -2.394 1.054 -0.872 -1.605 0.068 D 58 56 3 59 3 0 8 292 569 -6.101 -1.175 -0.883 IR 59 59 3 59 3 1 10 294 571 -3.152 -0.362 -3.195 0.000 0.000 0.000 0.000 [ MATR 20 ] - 233 - u - - MR 60 59 3 62 3 1 9 293 570 -2.214 -0.617 -2.916 0.338 -0.428 -0.867 0.530 D 61 59 3 62 3 0 8 291 569 -2.585 -1.664 -0.949 IR 62 62 3 62 3 1 10 293 570 -2.402 -0.352 -5.201 0.000 0.000 0.000 0.000 [ MATR 21 ] - 230 - C - - MR 63 62 3 65 3 1 9 292 569 -3.429 -0.626 -1.948 -1.451 1.333 -2.508 -0.092 D 64 62 3 65 3 0 7 291 568 -6.213 -1.085 -0.957 IR 65 65 3 65 3 1 9 292 569 -2.254 -0.404 -4.858 0.000 0.000 0.000 0.000 [ MATR 22 ] - 227 - G - - MR 66 65 3 68 2 1 8 291 568 -9.136 -0.003 0.187 -1.668 1.032 -0.993 D 67 65 3 68 2 0 7 290 567 -7.218 -0.010 IR 68 68 3 68 2 1 8 291 569 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 23 ] - - - - - - B 69 68 3 70 126 0 7 290 567 [ BEGL 24 ] - - - - - - S 70 69 1 71 4 0 0 139 294 -0.026 -7.615 -7.022 -7.662 [ MATP 25 ] 1 58 G U - - MP 71 70 1 75 6 2 2 139 294 -9.733 -7.833 -0.018 -8.449 -8.729 -9.124 -3.952 -2.102 -4.801 0.636 -5.745 -4.364 -0.771 -2.645 -3.660 1.251 -3.712 3.281 -1.282 -4.569 -2.954 -1.124 ML 72 70 1 75 6 1 1 137 292 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 73 70 1 75 6 1 1 137 291 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 74 70 1 75 6 0 0 133 287 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 75 75 5 75 6 1 1 138 293 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 76 76 6 76 5 1 1 138 293 -2.450 -0.480 -5.961 -4.129 -5.235 0.000 0.000 0.000 0.000 [ MATP 26 ] 2 56 G C - - MP 77 76 6 81 6 2 2 137 292 -9.733 -9.673 -0.014 -8.449 -8.729 -9.124 -4.942 -3.357 -4.862 0.150 -5.746 -5.006 -0.240 -5.412 -4.837 3.639 -5.102 -0.879 -1.115 -4.546 -2.611 -3.800 ML 78 76 6 81 6 1 1 135 290 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 79 76 6 81 6 1 1 135 289 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 80 76 6 81 6 0 0 132 286 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 81 81 5 81 6 1 1 136 291 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 82 82 6 82 5 1 1 136 291 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 3 55 g c - - MP 83 82 6 87 6 2 2 135 290 -9.733 -9.673 -0.014 -8.449 -8.729 -9.124 -3.878 -2.977 -3.815 0.801 -3.913 -4.495 1.693 -4.109 -2.785 2.949 -4.413 -0.697 0.260 -3.792 -0.646 -2.753 ML 84 82 6 87 6 1 1 134 288 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 85 82 6 87 6 1 1 133 288 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 86 82 6 87 6 0 0 131 285 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 87 87 5 87 6 1 1 135 289 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 88 88 6 88 5 1 1 134 289 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 4 54 g c - - MP 89 88 6 93 4 2 2 133 288 -6.252 -4.494 -0.151 -4.589 -3.780 -3.111 -3.175 0.645 -3.524 -4.510 2.279 -3.882 -3.783 2.560 -4.143 -0.658 0.775 -3.805 -1.047 -2.662 ML 90 88 6 93 4 1 1 132 287 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 91 88 6 93 4 1 1 132 286 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 92 88 6 93 4 0 0 131 285 -4.568 -4.250 -2.265 -0.520 IL 93 93 5 93 4 1 1 133 288 -1.828 -2.512 -0.967 -4.997 0.000 0.000 0.000 0.000 IR 94 94 6 94 3 1 1 133 287 -1.144 -1.073 -3.793 0.000 0.000 0.000 0.000 [ MATL 29 ] 6 - A - - - ML 95 94 6 97 5 1 1 131 286 -8.142 -0.019 -7.957 -8.169 -9.061 1.869 -3.349 -2.810 -3.233 D 96 94 6 97 5 0 0 130 284 -5.553 -0.493 -4.814 -3.189 -3.024 IL 97 97 3 97 5 1 1 131 286 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 7 49 C G - - MP 98 97 3 102 6 2 2 130 285 -9.733 -9.672 -0.027 -8.448 -8.728 -6.513 -5.454 -5.388 -3.782 -1.422 -3.780 -5.571 3.677 -4.613 -5.168 -0.643 -5.438 -3.239 -0.012 -5.511 -0.492 -3.958 ML 99 97 3 102 6 1 1 128 283 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 100 97 3 102 6 1 1 128 282 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 101 97 3 102 6 0 0 130 284 -9.067 -7.766 -3.563 -4.245 -4.262 -0.315 IL 102 102 5 102 6 1 1 130 284 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 103 103 6 103 5 1 1 129 284 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 8 48 C G - - MP 104 103 6 108 6 2 2 128 283 -9.719 -9.659 -0.039 -8.435 -8.715 -5.698 -6.716 -6.743 -6.127 -2.609 -2.276 -6.325 3.874 -5.709 -6.357 -2.206 -6.282 -4.715 -1.317 -6.717 -2.428 -5.151 ML 105 103 6 108 6 1 1 126 280 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 106 103 6 108 6 1 1 125 279 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 107 103 6 108 6 0 0 130 285 -9.373 -8.071 -3.868 -4.551 -4.568 -0.249 IL 108 108 5 108 6 1 1 127 282 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 109 109 6 109 5 1 1 127 282 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 9 47 U G - - MP 110 109 6 114 4 2 2 126 281 -3.988 -2.920 -0.330 -6.780 -5.572 -5.611 -5.108 -0.913 -3.637 -5.404 1.231 -4.485 -5.162 -1.274 -3.883 -3.661 -0.110 -5.553 3.499 -3.984 ML 111 109 6 114 4 1 1 122 276 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 112 109 6 114 4 1 1 120 274 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 113 109 6 114 4 0 0 131 286 -5.298 -1.345 -2.642 -1.249 IL 114 114 5 114 4 1 1 136 290 -2.047 -1.098 -1.886 -5.624 0.000 0.000 0.000 0.000 IR 115 115 6 115 3 1 1 139 293 -0.172 -3.199 -8.133 0.000 0.000 0.000 0.000 [ MATL 33 ] 12 - u - - - ML 116 115 6 118 3 1 1 14 32 -9.179 -0.009 -7.834 0.100 -0.877 -0.794 0.854 D 117 115 6 118 3 0 0 15 33 -6.174 -1.687 -0.566 IL 118 118 3 118 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 13 - C - - - ML 119 118 3 121 3 1 1 12 31 -9.179 -0.009 -7.834 -0.852 1.273 -1.533 -0.549 D 120 118 3 121 3 0 0 13 32 -6.174 -1.687 -0.566 IL 121 121 3 121 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 14 - G - - - ML 122 121 3 124 2 1 1 1 1 * 0.000 -0.870 -1.698 1.434 -1.173 D 123 121 3 124 2 0 0 0 0 * 0.000 IL 124 124 3 124 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 36 ] - - - - - - E 125 124 3 -1 0 0 0 0 0 [ BEGR 37 ] - - - - - - S 126 69 1 127 3 0 0 269 546 -9.179 -0.030 -5.751 IL 127 127 2 127 3 1 1 270 548 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 59 - a - - - ML 128 127 2 130 3 1 1 269 546 -9.159 -0.015 -6.863 0.621 -1.022 -0.801 0.481 D 129 127 2 130 3 0 0 265 543 -6.558 -2.071 -0.412 IL 130 130 3 130 3 1 1 269 547 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 60 - u - - - ML 131 130 3 133 3 1 1 268 545 -9.153 -0.009 -7.807 -0.172 -0.237 -1.400 0.915 D 132 130 3 133 3 0 0 264 542 -6.652 -2.165 -0.383 IL 133 133 3 133 3 1 1 268 546 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 61 - A - - - ML 134 133 3 136 3 1 1 267 544 -9.153 -0.010 -7.542 1.536 -1.046 -2.147 -1.360 D 135 133 3 136 3 0 0 264 541 -6.652 -2.165 -0.383 IL 136 136 3 136 3 1 1 267 545 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 62 - a - - - ML 137 136 3 139 3 1 1 266 543 -9.152 -0.009 -7.806 0.912 0.311 -1.815 -0.751 D 138 136 3 139 3 0 0 263 540 -6.671 -2.184 -0.377 IL 139 139 3 139 3 1 1 266 544 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 63 - C - - - ML 140 139 3 142 3 1 1 265 542 -9.152 -0.038 -5.385 -0.537 1.273 -1.884 -0.682 D 141 139 3 142 3 0 0 262 539 -6.671 -2.184 -0.377 IL 142 142 3 142 3 1 1 265 543 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 64 - a - - - ML 143 142 3 145 3 1 1 264 541 -9.123 -0.084 -4.194 0.832 0.069 -1.382 -0.346 D 144 142 3 145 3 0 0 261 538 -7.039 -2.552 -0.283 IL 145 145 3 145 3 1 1 265 542 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 65 - u - - - ML 146 145 3 148 3 1 1 263 540 -9.049 -0.233 -2.763 0.084 -0.098 -1.024 0.598 D 147 145 3 148 3 0 0 260 538 -7.688 -3.201 -0.174 IL 148 148 3 148 3 1 1 264 541 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 66 - a - - - ML 149 148 3 151 5 1 1 263 540 -1.829 -0.501 -7.687 -7.899 -8.468 0.775 -0.259 -1.008 -0.065 D 150 148 3 151 5 0 0 260 537 -6.814 -0.334 -5.176 -3.633 -3.483 IL 151 151 3 151 5 1 1 263 540 -1.116 -0.988 -6.081 -7.913 -6.013 0.000 0.000 0.000 0.000 [ MATP 46 ] 73 226 g c - - MP 152 151 3 156 6 2 2 261 538 -9.704 -9.643 -0.037 -5.740 -8.699 -9.094 -3.191 -2.017 -3.282 0.897 -3.534 -4.013 1.249 -3.258 -3.027 2.880 -3.922 -0.165 0.474 -2.894 -0.167 -2.357 ML 153 151 3 156 6 1 1 258 536 -6.319 -6.665 -1.215 -1.074 -6.515 -4.044 0.277 -0.141 -0.358 0.139 MR 154 151 3 156 6 1 1 258 535 -7.145 -5.874 -1.344 -5.852 -0.986 -4.065 0.264 -0.617 0.301 -0.128 D 155 151 3 156 6 0 0 249 526 -9.430 -8.129 -3.469 -4.608 -4.625 -0.281 IL 156 156 5 156 6 1 1 260 537 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 157 157 6 157 5 1 1 260 537 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 74 225 g c - - MP 158 157 6 162 6 2 2 259 536 -9.696 -9.635 -0.014 -8.411 -8.691 -9.086 -1.915 -1.785 -2.103 0.916 -1.470 -2.432 1.615 -2.211 -2.001 2.065 -1.656 0.285 0.983 -2.233 -0.188 -1.117 ML 159 157 6 162 6 1 1 257 534 -6.648 -6.994 -0.870 -1.403 -6.844 -4.373 0.291 -0.157 -0.340 0.124 MR 160 157 6 162 6 1 1 255 532 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 161 157 6 162 6 0 0 246 523 -9.395 -8.093 -3.890 -4.572 -4.590 -0.245 IL 162 162 5 162 6 1 1 258 535 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 163 163 6 163 5 1 1 258 535 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 75 224 c g - - MP 164 163 6 168 6 2 2 257 535 -9.718 -9.658 -0.015 -8.434 -8.418 -9.109 -1.828 -1.279 -1.970 1.090 -1.819 -2.839 1.901 -1.554 -1.999 1.432 -1.260 0.132 1.121 -2.164 0.208 -1.286 ML 165 163 6 168 6 1 1 254 531 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 166 163 6 168 6 1 1 253 530 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 167 163 6 168 6 0 0 244 521 -9.395 -8.093 -3.890 -4.572 -4.590 -0.245 IL 168 168 5 168 6 1 1 256 533 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 169 169 6 169 5 1 1 256 533 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 76 223 g c - - MP 170 169 6 174 6 2 2 255 533 -9.718 -4.387 -0.105 -6.008 -7.907 -9.108 -2.086 -2.126 -2.263 1.156 -1.416 -3.101 1.377 -2.600 -2.069 2.104 -1.028 -0.101 1.095 -2.390 0.271 -1.496 ML 171 169 6 174 6 1 1 252 530 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 172 169 6 174 6 1 1 250 527 -7.001 -5.730 -1.639 -5.708 -0.818 -3.922 0.398 -0.454 -0.072 0.001 D 173 169 6 174 6 0 0 241 518 -9.395 -8.093 -3.890 -4.572 -4.590 -0.245 IL 174 174 5 174 6 1 1 254 531 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 175 175 6 175 5 1 1 254 531 -2.918 -0.330 -6.429 -4.596 -5.702 0.000 0.000 0.000 0.000 [ MATP 50 ] 77 221 g c - - MP 176 175 6 180 6 2 2 253 531 -2.394 -6.939 -0.400 -8.412 -8.692 -4.710 -1.747 -1.836 -2.011 1.065 -1.556 -1.863 1.683 -2.422 -2.038 1.833 -2.408 0.369 1.042 -2.186 0.144 -1.330 ML 177 175 6 180 6 1 1 251 528 -2.317 -6.926 -1.578 -1.335 -6.776 -4.305 0.073 0.249 -0.587 0.129 MR 178 175 6 180 6 1 1 247 524 -7.046 -5.187 -1.550 -5.753 -0.887 -3.966 0.486 -0.419 -0.244 0.011 D 179 175 6 180 6 0 0 238 515 -3.676 -8.093 -3.890 -4.572 -4.590 -0.383 IL 180 180 5 180 6 1 1 257 534 -0.295 -3.593 -4.021 -8.878 -9.654 -4.744 0.000 0.000 0.000 0.000 IR 181 181 6 181 5 1 1 255 533 -0.342 -2.327 -9.044 -7.212 -8.318 0.000 0.000 0.000 0.000 [ MATP 51 ] 89 197 g c - - MP 182 181 6 186 6 2 2 250 527 -9.595 -9.535 -0.106 -7.687 -8.591 -4.046 -3.330 -2.720 -3.137 1.069 -3.385 -4.092 1.619 -3.642 -3.518 2.522 -3.832 0.581 0.955 -3.376 -0.721 -2.364 ML 183 181 6 186 6 1 1 246 523 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 184 181 6 186 6 1 1 243 520 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 185 181 6 186 6 0 0 229 506 -10.808 -9.506 -5.303 -5.985 -6.003 -0.087 IL 186 186 5 186 6 1 1 249 526 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 187 187 6 187 5 1 1 249 526 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 90 196 c g - - MP 188 187 6 192 6 2 2 249 526 -9.506 -9.445 -0.110 -6.603 -8.501 -4.114 -2.307 -2.332 -2.273 0.896 -1.882 -3.320 2.215 -2.647 -2.516 1.446 -3.020 -0.724 1.671 -1.732 -0.120 -1.624 ML 189 187 6 192 6 1 1 241 519 -6.295 -6.641 -1.246 -1.050 -6.491 -4.021 0.379 -0.303 -0.269 0.082 MR 190 187 6 192 6 1 1 237 514 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 191 187 6 192 6 0 0 227 505 -11.304 -10.003 -5.800 -6.482 -6.499 -0.061 IL 192 192 5 192 6 1 1 247 525 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 193 193 6 193 5 1 1 247 525 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 91 195 c g - - MP 194 193 6 198 4 2 2 248 525 -1.138 -2.560 -1.469 -6.083 -1.707 -2.015 -2.052 1.013 -1.975 -2.892 2.096 -1.934 -1.548 1.450 -2.232 -0.535 1.307 -2.189 0.065 -0.872 ML 195 193 6 198 4 1 1 230 508 -2.729 -4.065 -0.632 -2.795 0.681 -0.599 -0.305 -0.109 MR 196 193 6 198 4 1 1 217 495 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 197 193 6 198 4 0 0 226 504 -7.077 -2.084 -1.305 -1.507 IL 198 198 5 198 4 1 1 255 532 -0.222 -3.003 -5.923 -9.661 0.000 0.000 0.000 0.000 IR 199 199 6 199 3 1 1 247 525 -0.096 -4.035 -8.256 0.000 0.000 0.000 0.000 [ MATL 54 ] 117 - a - - - ML 200 199 6 202 3 1 1 17 35 -9.014 -0.032 -5.658 0.555 -0.674 -0.145 -0.000 D 201 199 6 202 3 0 0 15 34 -7.906 -3.419 -0.148 IL 202 202 3 202 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 118 - a - - - ML 203 202 3 205 3 1 1 15 34 -8.993 -0.019 -6.518 0.737 -0.234 -0.802 -0.137 D 204 202 3 205 3 0 0 14 33 -8.025 -2.662 -0.255 IL 205 205 3 205 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 119 - a - - - ML 206 205 3 208 3 1 1 14 32 -9.004 -0.151 -3.357 0.659 0.191 -1.202 -0.242 D 207 205 3 208 3 0 0 13 32 -7.965 -3.478 -0.142 IL 208 208 3 208 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 120 - a - - - ML 209 208 3 211 3 1 1 12 31 -8.864 -0.371 -2.154 0.464 -0.261 -0.491 0.104 D 210 208 3 211 3 0 0 12 30 -8.558 -4.071 -0.093 IL 211 211 3 211 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 121 - c - - - ML 212 211 3 214 2 1 1 1 1 * 0.000 0.109 0.261 -0.773 0.186 D 213 211 3 214 2 0 0 0 0 * 0.000 IL 214 214 3 214 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 215 214 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME L2-Alphaproteobacteria ACC RF03142 DESC L2-Alphaproteobacteria ribosomal protein leader LENG 69 MAXL 405 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 13 13:21:57 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED NSEQ 452 EFFN 17.307953 CKSUM 829956238 STATS LOCAL MSV -8.3693 0.71887 STATS LOCAL VITERBI -9.1841 0.71887 STATS LOCAL FORWARD -3.1550 0.71887 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.26471 1.36481 1.25686 1.72764 1.38629 1.38629 1.38629 1.38629 0.00951 5.35322 5.35322 1.46634 0.26236 0.00000 * 1 2.66213 3.86038 0.14357 3.14934 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.00951 5.35322 5.35322 1.46634 0.26236 1.09861 0.40547 2 3.15627 3.08185 0.12044 3.68841 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.00951 5.35322 5.35322 1.46634 0.26236 1.09861 0.40547 3 2.43830 1.49253 0.50701 2.45811 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.00951 5.35322 5.35322 1.46634 0.26236 1.09861 0.40547 4 2.51648 1.02002 0.78087 2.29599 4 g - - < 1.38629 1.38629 1.38629 1.38629 0.07049 4.16657 2.94579 0.52791 0.89120 1.09861 0.40547 5 0.05373 4.18299 3.77541 4.25931 6 A - - - 1.38629 1.38629 1.38629 1.38629 0.00999 5.30421 5.30421 1.46634 0.26236 0.18305 1.78811 6 4.21522 0.13570 3.40318 2.54009 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.02665 5.35231 3.83669 1.46634 0.26236 1.16072 0.37580 7 4.88354 0.04091 4.45182 3.86989 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.04289 5.33534 3.29242 1.46634 0.26236 1.90872 0.16049 8 3.60243 2.27199 3.85758 0.16426 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.07885 2.64728 5.30246 0.26679 1.45173 0.16089 1.90639 9 1.33519 2.19989 2.01787 0.70697 12 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00951 5.35322 5.35322 1.46634 0.26236 1.09861 0.40547 10 2.20139 0.37449 2.59540 2.06281 13 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00951 5.35322 5.35322 1.46634 0.26236 1.09861 0.40547 11 2.24178 2.77642 0.29679 2.42735 14 G - - _ 1.38629 1.38629 1.38629 1.38629 0.26337 1.50291 4.70384 2.64532 0.07363 1.09861 0.40547 12 3.43920 4.09621 0.08177 3.51361 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.02323 5.34888 4.00599 1.46634 0.26236 1.36465 0.29500 13 3.45025 4.49350 0.05324 4.71857 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.00968 5.33534 5.33534 1.46634 0.26236 0.39310 1.12381 14 3.30838 3.44459 0.08609 4.26879 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.05679 2.98641 5.35231 0.97198 0.47535 0.98490 0.46757 15 2.48638 0.84257 0.96746 2.24297 54 c - - > 1.38629 1.38629 1.38629 1.38629 0.00951 5.35322 5.35322 1.46634 0.26236 1.09861 0.40547 16 2.90585 0.55402 1.34104 2.21562 55 C - - > 1.38629 1.38629 1.38629 1.38629 0.00951 5.35322 5.35322 1.46634 0.26236 1.09861 0.40547 17 4.00512 0.14088 2.95061 2.79886 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.01539 4.55232 5.35322 0.73925 0.64907 1.09861 0.40547 18 4.37739 2.18216 4.28785 0.14977 58 U - - > 1.38629 1.38629 1.38629 1.38629 0.02592 5.35322 3.87025 1.46634 0.26236 1.09861 0.40547 19 0.88513 2.37179 2.05832 1.00414 59 a - - - 1.38629 1.38629 1.38629 1.38629 0.01444 5.33697 4.65360 1.46634 0.26236 1.85723 0.16973 20 1.57196 1.55722 2.66350 0.66956 60 U - - - 1.38629 1.38629 1.38629 1.38629 0.00971 5.33224 5.33224 1.46634 0.26236 1.99966 0.14547 21 0.23151 2.15322 3.55998 2.77880 61 A - - - 1.38629 1.38629 1.38629 1.38629 0.01075 5.33224 5.13992 1.46634 0.26236 1.99966 0.14547 22 0.65251 1.04392 3.36284 2.37994 62 A - - - 1.38629 1.38629 1.38629 1.38629 0.00972 5.33121 5.33121 1.46634 0.26236 2.02796 0.14111 23 1.85731 0.37309 3.02991 2.23509 63 C - - - 1.38629 1.38629 1.38629 1.38629 0.03238 5.33121 3.61123 1.46634 0.26236 2.02796 0.14111 24 0.71786 1.24251 2.71807 1.84805 64 a - - - 1.38629 1.38629 1.38629 1.38629 0.06948 5.30878 2.77782 1.46634 0.26236 2.50004 0.08565 25 1.35142 1.42820 2.27069 0.92094 65 u - - - 1.38629 1.38629 1.38629 1.38629 0.19179 5.24986 1.77627 1.46634 0.26236 3.16752 0.04302 26 0.75693 1.53589 2.29311 1.53861 66 a - - - 1.38629 1.38629 1.38629 1.38629 0.44277 1.04769 4.96207 0.82940 0.57326 0.14536 2.00037 27 2.22752 1.86020 0.51350 1.97932 73 G - - < 1.38629 1.38629 1.38629 1.38629 0.01691 5.32657 4.43068 1.46634 0.26236 0.76528 0.62587 28 2.03158 1.40604 0.79794 1.75155 74 g - - < 1.38629 1.38629 1.38629 1.38629 0.00970 5.33399 5.33399 1.46634 0.26236 1.94948 0.15356 29 1.76074 1.17691 1.16530 1.57010 75 g - - < 1.38629 1.38629 1.38629 1.38629 0.01071 5.33399 5.14486 1.46634 0.26236 1.94948 0.15356 30 1.85271 1.73392 0.78074 1.56766 76 g - - < 1.38629 1.38629 1.38629 1.38629 0.01305 5.33298 4.81138 1.46634 0.26236 1.08297 0.41338 31 1.86077 1.32123 0.97144 1.61392 77 g - - < 1.38629 1.38629 1.38629 1.38629 0.59464 0.97650 2.63653 1.84029 0.17289 1.22888 0.34619 32 2.04970 1.57579 0.65986 1.91422 89 G - - < 1.38629 1.38629 1.38629 1.38629 0.24047 5.27213 1.56731 1.46634 0.26236 2.96824 0.05276 33 2.03587 1.03313 1.49825 1.23780 90 c - - < 1.38629 1.38629 1.38629 1.38629 0.14137 5.04463 2.07634 1.46634 0.26236 4.07924 0.01707 34 1.85120 1.06496 1.35478 1.42626 91 c - - < 1.38629 1.38629 1.38629 1.38629 0.75647 0.65135 4.67354 2.12316 0.12744 0.40160 1.10639 35 0.94321 1.94437 1.44112 1.46584 117 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03935 5.23302 3.40379 1.46634 0.26236 3.29322 0.03784 36 0.79330 1.50711 2.05580 1.61893 118 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01800 5.20471 4.39435 1.46634 0.26236 2.10922 0.12935 37 0.85605 1.13939 2.50147 1.75341 119 a - - _ 1.38629 1.38629 1.38629 1.38629 0.12560 5.21375 2.18397 1.46634 0.26236 3.41791 0.03333 38 1.01935 1.54387 1.75117 1.37814 120 a - - _ 1.38629 1.38629 1.38629 1.38629 0.22521 5.10041 1.63192 1.46634 0.26236 1.05760 0.42662 39 1.34515 1.07905 2.01964 1.32097 121 c - - _ 1.38629 1.38629 1.38629 1.38629 1.40639 0.36206 2.83480 3.05062 0.04849 1.36407 0.29520 40 1.66788 1.53215 0.92067 1.62440 195 g - - > 1.38629 1.38629 1.38629 1.38629 0.12592 5.05774 2.18963 1.46634 0.26236 1.33898 0.30397 41 1.43010 1.52937 0.93389 1.89034 196 g - - > 1.38629 1.38629 1.38629 1.38629 0.01302 5.04075 5.04075 1.46634 0.26236 0.98603 0.46690 42 2.14904 0.89780 1.43754 1.43369 197 c - - > 1.38629 1.38629 1.38629 1.38629 0.33640 1.37434 3.42174 2.00905 0.14400 0.17409 1.83398 43 1.88433 1.17885 1.19439 1.43738 221 c - - > 1.38629 1.38629 1.38629 1.38629 0.10335 2.37245 5.31027 0.10279 2.32604 0.70731 0.67918 44 1.86681 1.01229 1.30150 1.56126 223 c - - > 1.38629 1.38629 1.38629 1.38629 0.00970 5.33399 5.33399 1.46634 0.26236 1.94948 0.15356 45 1.91280 1.46306 0.96184 1.43290 224 g - - > 1.38629 1.38629 1.38629 1.38629 0.03940 5.33399 3.38707 1.46634 0.26236 1.94948 0.15356 46 1.95133 1.00927 1.28434 1.52972 225 c - - > 1.38629 1.38629 1.38629 1.38629 0.01702 5.30457 4.43037 1.46634 0.26236 0.62050 0.77149 47 2.58050 0.57771 1.52970 1.92086 226 C - - > 1.38629 1.38629 1.38629 1.38629 0.43753 5.32722 1.05122 1.46634 0.26236 1.25664 0.33493 48 1.30244 3.06225 0.50771 2.53228 227 G - - : 1.38629 1.38629 1.38629 1.38629 0.41434 1.98971 1.59707 0.22371 1.60717 0.43903 1.03469 49 2.91762 0.34301 3.87732 1.53434 230 C - - : 1.38629 1.38629 1.38629 1.38629 0.48402 1.33533 2.11505 0.20805 1.67219 0.60271 0.79259 50 1.11681 1.74223 2.12778 0.97168 233 u - - : 1.38629 1.38629 1.38629 1.38629 0.38829 1.46609 2.39734 0.05019 3.01694 0.31445 1.31003 51 0.52646 2.18081 3.12402 1.37683 235 A - - : 1.38629 1.38629 1.38629 1.38629 0.01290 5.23051 4.89673 1.46634 0.26236 1.13462 0.38794 52 2.87032 3.61829 0.12059 3.50344 236 G - - : 1.38629 1.38629 1.38629 1.38629 0.03017 5.26941 3.70615 1.46634 0.26236 1.29794 0.31896 53 3.21798 0.08068 4.50355 3.63405 237 C - - : 1.38629 1.38629 1.38629 1.38629 0.66609 0.95648 2.28235 0.02648 3.64443 0.44082 1.03145 54 0.21192 3.16857 3.74147 2.07796 239 A - - : 1.38629 1.38629 1.38629 1.38629 0.01072 5.23383 5.23383 1.46634 0.26236 0.19106 1.74916 55 0.12560 3.19597 2.96354 3.67015 240 A - - : 1.38629 1.38629 1.38629 1.38629 0.00963 5.34056 5.34056 1.46634 0.26236 1.73294 0.19451 56 0.02151 5.39984 4.48392 5.20692 241 A - - : 1.38629 1.38629 1.38629 1.38629 0.00963 5.34056 5.34056 1.46634 0.26236 0.43623 1.03979 57 5.15349 0.02379 5.46214 4.30598 242 C - - : 1.38629 1.38629 1.38629 1.38629 0.00951 5.35322 5.35322 1.46634 0.26236 1.09861 0.40547 58 4.87060 6.01636 0.01481 5.38403 243 G - - : 1.38629 1.38629 1.38629 1.38629 0.00951 5.35322 5.35322 1.46634 0.26236 1.09861 0.40547 59 4.50439 5.95290 0.01863 5.34031 244 G - - : 1.38629 1.38629 1.38629 1.38629 0.01328 5.35322 4.77261 1.46634 0.26236 1.09861 0.40547 60 0.01273 5.71640 5.29366 5.44101 245 A - - : 1.38629 1.38629 1.38629 1.38629 0.02607 3.86413 5.34949 0.40409 1.10137 0.75100 0.63846 61 0.01267 5.72128 5.29823 5.44530 247 A - - : 1.38629 1.38629 1.38629 1.38629 0.00951 5.35322 5.35322 1.46634 0.26236 1.09861 0.40547 62 4.87060 6.01636 0.01481 5.38403 248 G - - : 1.38629 1.38629 1.38629 1.38629 0.00951 5.35322 5.35322 1.46634 0.26236 1.09861 0.40547 63 0.03742 4.90468 4.82190 3.85068 249 A - - : 1.38629 1.38629 1.38629 1.38629 0.02042 5.35258 4.16841 1.46634 0.26236 1.09861 0.40547 64 4.20607 0.03971 4.62527 4.25289 250 C - - : 1.38629 1.38629 1.38629 1.38629 0.00962 5.34178 5.34178 1.46634 0.26236 0.47748 0.96849 65 0.02020 5.44623 4.56366 5.24652 251 A - - : 1.38629 1.38629 1.38629 1.38629 0.00952 5.35258 5.35258 1.46634 0.26236 1.09861 0.40547 66 4.43422 4.33565 0.03537 4.62574 252 G - - : 1.38629 1.38629 1.38629 1.38629 0.00952 5.35258 5.35258 1.46634 0.26236 1.09861 0.40547 67 0.18901 2.99405 3.06570 2.58343 253 A - - : 1.38629 1.38629 1.38629 1.38629 0.06060 4.15700 3.14309 0.52376 0.89720 1.09861 0.40547 68 0.16836 3.43298 2.45251 3.30812 255 A - - : 1.38629 1.38629 1.38629 1.38629 0.00990 5.31341 5.31341 1.46634 0.26236 0.19845 1.71479 69 0.01268 5.72044 5.29745 5.44457 256 A - - : 1.38629 1.38629 1.38629 1.38629 0.00477 5.34783 * 1.46634 0.26236 0.00000 * //