Rfam: Seed sequence alignment for RF03142

URS0001A24727_1290553/1-76 Halocynthiibacter namhaensis 0.0 URS0001A2419C_314271/1-102 Maritimibacter alkaliphilus HTCC2654 0.0 URS0001A244F2_12908/1-72 unclassified sequences 0.0 URS0001A23AA0_1247725/1-63 Rhodobacter sp. AKP1 0.0 URS0001A23F56_12908/1-66 unclassified sequences 0.0 URS0001A246D8_12908/1-67 unclassified sequences 0.0 URS0001A2335B_12908/1-67 unclassified sequences 0.0 URS0001A24668_12908/1-67 unclassified sequences 0.0 URS0001A23E8C_12908/1-97 unclassified sequences 0.0 URS0001A241A1_766499/1-83 Citreicella sp. 357 0.0 URS0001A23CFA_1461694/1-69 Pseudooceanicola atlanticus 0.0 URS0001A23F84_1169855/1-60 Rhodobacteraceae bacterium PD-2 0.0 URS0001A2440E_12908/1-65 unclassified sequences 0.0 URS0001A24109_12908/1-61 unclassified sequences 0.0 URS0001A23498_1414586/1-62 Rhodobacter capsulatus YW1 0.0 URS0001A23B23_12908/1-66 unclassified sequences 0.0 URS0001A245E9_252305/1-79 Oceanicola batsensis HTCC2597 0.0 URS0001A23D3E_12908/1-76 unclassified sequences 0.0 URS0001A244E7_12908/1-61 unclassified sequences 0.0 URS0001A23F26_12908/1-64 unclassified sequences 0.0 URS0001A243D7_12908/1-64 unclassified sequences 0.0 URS0001A235EC_12908/1-63 unclassified sequences 0.0 URS0001A2418A_12908/1-62 unclassified sequences 0.0 URS0001A24A27_12908/1-62 unclassified sequences 0.0 URS0001A23C4F_12908/1-62 unclassified sequences 0.0 URS0001A23B4A_12908/1-62 unclassified sequences 0.0 URS0001A23B05_391595/1-68 Roseobacter litoralis Och 149 0.0 URS0001A24622_12908/1-67 unclassified sequences 0.0 URS0001A23594_375451/1-68 Roseobacter denitrificans OCh 114 0.0 URS0001A23FA4_12908/1-69 unclassified sequences 0.0

GGCC.ACCU..UCG................................GGG....GGC.UUACAUA--......-GCGG...........ACcg........................UGACcauucggguu...............................................................ggGU.......................U.CGC-A..C..-.AGCuAAACGGA.AGACAGA.AA GGCC.ACCU..UCG................................GGG....GGC.UACACC---......CGGGC...........--..........................ACCGcucagcgagcaaagcccacacacagacaggcggggcacgcaccc...............................--.......................C.GCUG-..C..AaAGC.-AACGGA.AGACAGA.AA GGCC.ACCU..UCG................................GGG....GGC.UAAACAUCA......GGCGG...........ACc.........................AGUUacag......................................................................gAU.......................C.CGCC-..U..C.AGCuAGACGGA.AGACAGA.AA GGGG.AUCU..UCG................................GAG....CCC.UGUACC---......GACCC...........CUc.........................CC--..........................................................................gAG.......................G.GGUCU..C..U.AGC.UGACGGA.AGACAGG.AA UGGA.ACCU..UCG................................GGG....UCC.UUUAACCAUa.....GCAGG...........C-..........................CAAUc..........................................................................-G.......................C.CUGCG..UuuAa---.AAGCGGA.AGACAGU.AA GGGG.ACC-..UUUg...............................-GG....GCC.CUAUACACCa.....GCGGU...........C-..........................UUAAuc.........................................................................-G.......................G.CCGCG..Cu.A.AGC.AAACGGA.AGACAGA.AA GGGC.ACCU..AAG................................GGG....GCC.UAUAACCAA......AGAGAacuuuu.....--..........................----...........................................................................--.......................U.CUCUU.aAuaU.AGC.AAACGGA.AGACAGC.AA GGGC.ACCU..AAG................................GGG....GCC.UAUAACCAA......AGAGAaguuuu.....--..........................----...........................................................................--.......................U.CUCUU.aAuaU.AGC.AAACGGA.AGACAGC.AA GGCC.ACCCu.AGUagggcguuuccagcggggaacaaacggac..gGGG....GGC.UAUAACCUAag....GGUAG...........GC..........................AAUC...........................................................................GC.......................C.UGCCU..CacA.---.AAACGGA.AGACAGA.-A GGCC.ACCU..GCGgcgccgacaaggggcga...............GGG....GGC.UAGCACAUA......GGUCG...........GGgc........................----.........................................................................gaCC.......................C.GACCG.uCu.-.-GU.AAACGGA.AGACAGA.AA GGUC.ACCU..UCG................................GGG....GGC.CUCACACAUa.....GCCGG...........GCg.........................CUCA..........................................................................cGC.......................C.UGGCA..C..U.-GCuAAACGGA.AGACAGA.AA GGGC.-C--..GCAu...............................--G....GCC.CCACACACA......GGCGG...........G-..........................GCAA...........................................................................-C.......................C.CGCCG..-..GaAGC.UUACGGA.AGACAGA.AA GGGU.-CAG..GAAa...............................CUG....ACC.CCAAACAUAa.....GGCGG...........G-..........................GUAA...........................................................................-C.......................C.CGUC-..-..UaAGCuAAACGGA.AGACAGA.AA GGGU.-C--..CAGc...............................--G....ACC.CCAAACACA......GGCGG...........G-..........................ACCA...........................................................................-C.......................C.CGCC-..UuuU.AGC.UAACGGA.AGACAGA.AA GGGG.AGC-..UACggc.............................-GC....CCC.UUACGCAAC......GGACCugcaa......--..........................----...........................................................................--.......................G.GUCCA..-..-aAGC.-AACGGA.AGACAGA.GA GGCC.ACCU..CCG................................GGG....GGC.UUACAUAUC......GCAGA...........GG..........................CACA...........................................................................CC.......................U.CUGCA..-..U.UGCuAAACGGA.AGACAGA.AA GGCC.ACCU..UCG................................GGG....GGC.UUAUCACAUa.....GGUCUucgc.......GCcc........................GGAG.........................................................................ggGCagg....................G.GAUCG..C..U.AGCuAAACGGA.AGACAGA.AA GGGC.ACCU..ACG................................GGG....GCC.UUUUUACAUca....GGAUC...........GGggc.......................CGC-........................................................................gcgCCuuc....................G.GUCCG..C..CaAGC.AAACGGA.AGA-AGC.UA GCCG.ACCU..UCG................................GGG....CGG.UUUACUCAAu.....UCAGGccua.......--..........................----...........................................................................--.......................G.CCUGA.aCa.C.---.-AACGGA.AGACAGA.UA GCCG.ACCU..UCG................................GGG....CGG.UUUACUCAAu.....UCAGGccuugug....--..........................----...........................................................................--.......................C.CUGA-..Ca.-.UAC.-AACGGA.AGACAGU.UA GCCG.ACCU..UCG................................GGG....CGG.UUUACUCAAu.....UCAGGccuugug....--..........................----...........................................................................--.......................C.CUGA-..Ca.-.UAC.-AACGGA.AGACAGU.AA GCCG.ACCU..UCG................................GGG....CGG.UUUACUCAAu.....UCAGG...........C-..........................GCAA...........................................................................-G.......................U.CUGAA..-..-aUAC.-AACGGA.AGACAGA.UA GCCG.ACCU..UCG................................GGG....CGG.UUUACUCAAu.....UCAGG...........C-..........................CUA-...........................................................................-G.......................C.CUGAA..-..-aUAC.-AACGGA.AGACAGA.GA GCCG.ACCU..UCG................................GGG....CGG.UAUACUCAAu.....UCAGG...........C-..........................CUA-...........................................................................-G.......................C.CUGAA..-..-aUAC.-AACGGA.AGACAGA.GA GCCG.ACCU..UCG................................GGG....CGG.UUUACUCAAu.....UCAGG...........C-..........................CUA-...........................................................................-G.......................C.CUGAA..-..-aUAC.-AACGGA.AGACAGA.UA GCCG.ACCU..UCG................................GGG....CGG.UAUACUCAAu.....UCAGG...........C-..........................CUA-...........................................................................-G.......................C.CUGAA..-..-aUAC.-AACGGA.AGACAGA.UA GGGC.ACCU..ACG................................GGG....GCC.UUCAUACCAuc....GCCGGggagac.....--..........................----...........................................................................--.......................C.CGGCG..Ca.U.AGCaAAACGGA.AGACAGA.CA GGGC.ACCU..ACG................................GGG....GCC.UUCAUACCAua....GGCGGggagac.....--..........................----...........................................................................--.......................C.CGCUG..U..UaAGC.AAACGGA.AGACAGA.CA GGGC.ACCU..ACG................................GGG....GCC.UUCAUACCAu.....CGCCG...........GG..........................GCAA...........................................................................CC.......................C.GGCG-..Ca.U.AGCaAAACGGA.AGACAGA.CA GGGC.ACCU..ACG................................GGG....GCC.UUCAUACCAu.....GGUCG...........UC..........................AUCGc..........................................................................GA.......................C.GACCG.aC..-.AGCaAAACGGA.AGACAGA.CA