INFERNAL1/a [1.1.4 | Dec 2020] NAME S4-Clostridia ACC RF03140 DESC S4-Clostridia ribosomal protein leader STATES 180 NODES 47 CLEN 57 W 401 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 9 14:10:55 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmcalibrate --cpu 8 CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 140 EFFN 45.130005 CKSUM 3758985946 NULL 0.000 0.000 0.000 0.000 GA 37.50 TC 37.50 NC 37.20 EFP7GF -17.7765 0.72365 ECMLC 0.70644 -3.77531 4.30947 1600000 362749 0.003308 ECMGC 0.41946 -20.40900 -7.45537 1600000 91587 0.004367 ECMLI 0.71631 -2.56467 5.12789 1600000 296659 0.004045 ECMGI 0.42823 -14.44287 -2.57643 1600000 64414 0.006210 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 401 784 -10.678 -10.885 -0.004 -9.299 IL 1 1 2 1 4 3 23 404 787 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 2 23 404 787 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 4 23 402 785 -11.596 -0.002 -10.250 -4.711 -7.940 1.982 -6.961 D 4 2 3 5 3 0 18 400 783 -6.174 -1.687 -0.566 IL 5 5 3 5 3 2 22 403 786 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 4 22 401 784 -11.596 -0.002 -10.250 1.963 -6.627 -6.461 -3.664 D 7 5 3 8 3 0 18 399 782 -6.174 -1.687 -0.566 IL 8 8 3 8 3 2 21 402 785 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 3 21 400 783 -11.596 -0.002 -10.250 1.993 -7.726 -7.014 -7.158 D 10 8 3 11 3 0 17 398 781 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 21 401 784 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 3 20 399 782 -11.897 -0.002 -10.214 1.962 -6.923 -3.561 -6.607 D 13 11 3 14 3 0 16 397 780 -5.620 -0.734 -1.403 IL 14 14 3 14 3 1 19 399 782 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 248 - G - - MR 15 14 3 17 3 2 19 398 781 -11.897 -0.008 -7.569 0.349 -4.625 1.262 -1.796 D 16 14 3 17 3 0 15 396 779 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 18 398 781 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 247 - G - - MR 18 17 3 20 3 3 18 397 780 -11.890 -0.002 -10.208 0.531 -6.038 1.334 -5.747 D 19 17 3 20 3 0 14 395 778 -6.905 -0.899 -1.135 IR 20 20 3 20 3 1 17 397 780 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 246 - A - - MR 21 20 3 23 3 2 17 396 779 -11.897 -0.002 -10.214 1.718 -4.391 -3.732 -0.768 D 22 20 3 23 3 0 13 394 777 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 17 396 779 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 245 - U - - MR 24 23 3 26 3 2 16 395 778 -11.897 -0.002 -10.214 -5.591 -3.002 -6.338 1.942 D 25 23 3 26 3 0 13 393 776 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 16 395 778 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 244 - U - - MR 27 26 3 29 3 2 15 394 777 -3.544 -0.131 -10.214 -6.008 -4.080 -6.781 1.969 D 28 26 3 29 3 0 12 392 775 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 16 396 779 -0.691 -1.414 -7.553 0.000 0.000 0.000 0.000 [ MATR 10 ] - 239 - A - - MR 30 29 3 32 3 2 14 393 776 -11.897 -0.002 -10.214 1.703 -4.077 -0.875 -2.836 D 31 29 3 32 3 0 12 391 774 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 14 393 776 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 238 - A - - MR 33 32 3 35 3 1 13 392 775 -11.897 -0.002 -10.214 1.928 -6.035 -6.096 -2.598 D 34 32 3 35 3 0 11 390 773 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 13 392 775 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 237 - C - - MR 36 35 3 38 2 1 12 391 774 -12.232 -0.000 -7.041 1.990 -7.501 -6.098 D 37 35 3 38 2 0 11 390 773 -4.432 -0.068 IR 38 38 3 38 2 1 12 391 774 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 13 ] - - - - - - B 39 38 3 40 111 0 11 390 773 [ BEGL 14 ] - - - - - - S 40 39 1 41 4 0 0 162 325 -0.006 -9.681 -9.088 -9.728 [ MATP 15 ] 5 80 G U - - MP 41 40 1 45 6 2 2 162 325 -11.614 -11.553 -0.004 -10.330 -10.609 -11.004 -7.497 -0.934 -7.691 -1.261 -9.812 -10.975 -5.274 -7.733 -7.252 -2.818 -7.921 3.854 -5.208 -1.485 -7.106 -6.290 ML 42 40 1 45 6 1 1 159 322 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 43 40 1 45 6 1 1 159 322 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 44 40 1 45 6 0 0 153 316 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 45 45 5 45 6 1 1 161 324 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 46 46 6 46 5 1 1 161 323 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 6 79 G C - - MP 47 46 6 51 6 2 2 160 323 -11.614 -11.553 -0.004 -10.330 -10.609 -11.004 -8.931 -6.160 -9.885 0.928 -10.747 -7.549 -5.363 -9.824 -7.487 3.802 -7.754 -3.969 -5.646 -7.907 -7.665 -8.608 ML 48 46 6 51 6 1 1 157 320 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 49 46 6 51 6 1 1 157 320 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 50 46 6 51 6 0 0 152 314 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 51 51 5 51 6 1 1 159 322 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 52 52 6 52 5 1 1 159 321 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 7 78 c g - - MP 53 52 6 57 6 2 2 158 321 -11.614 -11.553 -0.004 -10.330 -10.609 -11.004 -5.957 -5.541 -5.942 -0.877 -4.934 -6.756 2.401 -5.551 -5.851 2.396 -6.344 -0.692 0.727 -6.092 1.283 -4.565 ML 54 52 6 57 6 1 1 155 318 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 55 52 6 57 6 1 1 155 318 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 56 52 6 57 6 0 0 150 313 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 57 57 5 57 6 1 1 157 320 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 58 58 6 58 5 1 1 157 319 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 8 77 c g - - MP 59 58 6 63 6 2 2 156 319 -11.614 -11.553 -0.004 -10.330 -10.609 -11.004 -6.497 -6.243 -6.421 -1.424 -5.206 -7.146 2.942 -5.904 -4.269 -1.868 -6.772 -2.955 2.157 -6.646 1.530 -5.041 ML 60 58 6 63 6 1 1 153 316 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 61 58 6 63 6 1 1 153 315 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 62 58 6 63 6 0 0 148 311 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 63 63 5 63 6 1 1 155 318 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 64 64 6 64 5 1 1 155 317 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 9 76 G C - - MP 65 64 6 69 6 2 2 154 317 -11.614 -6.156 -0.024 -10.330 -10.609 -11.004 -5.916 -4.554 -1.904 1.662 -6.923 -6.411 -1.998 -6.405 -6.132 3.346 -6.411 0.651 -1.555 -5.656 -4.002 -4.701 ML 66 64 6 69 6 1 1 151 314 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 67 64 6 69 6 1 1 150 313 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 68 64 6 69 6 0 0 147 310 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 69 69 5 69 6 1 1 153 316 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 153 315 -2.958 -0.320 -6.469 -4.637 -5.743 0.000 0.000 0.000 0.000 [ MATP 20 ] 10 74 u a - - MP 71 70 6 75 6 2 2 152 315 -11.614 -11.553 -0.091 -10.330 -8.095 -4.150 -6.159 -5.884 -3.312 -1.731 -3.889 -6.935 2.413 -5.652 -6.008 0.884 -6.504 -3.477 2.680 -6.332 0.788 -4.738 ML 72 70 6 75 6 1 1 148 311 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 73 70 6 75 6 1 1 148 310 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 74 70 6 75 6 0 0 146 309 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 75 75 5 75 6 1 1 151 314 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 76 76 6 76 5 1 1 151 314 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 11 73 G C - - MP 77 76 6 81 6 2 2 150 313 -11.526 -11.466 -0.414 -10.242 -7.070 -2.055 -5.617 -4.260 -5.437 2.147 -6.549 -6.034 0.113 -0.517 -5.872 3.023 -6.120 -0.429 -1.510 -5.293 -1.539 -4.401 ML 78 76 6 81 6 1 1 145 307 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 79 76 6 81 6 1 1 144 306 -7.248 -5.977 -1.886 -5.955 -1.089 -2.178 0.039 -0.395 -0.557 0.615 D 80 76 6 81 6 0 0 146 309 -11.720 -10.418 -6.216 -6.898 -6.915 -0.046 IL 81 81 5 81 6 1 1 149 312 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 82 82 6 82 5 1 1 149 312 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 12 72 u a - - MP 83 82 6 87 4 2 2 149 311 -0.850 -2.793 -1.744 -8.728 -3.898 -2.995 -4.051 1.018 -2.817 -4.900 1.792 -4.154 -4.065 1.348 -4.622 -2.258 2.308 -4.201 0.698 -0.873 ML 84 82 6 87 4 1 1 133 296 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 85 82 6 87 4 1 1 127 290 -5.376 -4.405 -0.911 -1.333 -0.181 -0.494 -0.801 0.875 D 86 82 6 87 4 0 0 146 309 -6.408 -0.487 -2.009 -5.254 IL 87 87 5 87 4 1 1 150 313 -1.882 -0.489 -6.068 -9.805 0.000 0.000 0.000 0.000 IR 88 88 6 88 3 1 1 149 312 -0.163 -3.236 -10.205 0.000 0.000 0.000 0.000 [ MATL 23 ] 15 - a - - - ML 89 88 6 91 3 1 1 17 36 -11.590 -0.074 -4.324 0.367 -1.017 0.091 0.203 D 90 88 6 91 3 0 0 18 36 -6.695 -2.208 -0.370 IL 91 91 3 91 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 16 - a - - - ML 92 91 3 94 3 1 1 16 34 -11.517 -0.002 -10.171 0.673 -1.398 -0.656 0.476 D 93 91 3 94 3 0 0 15 34 -8.990 -4.503 -0.068 IL 94 94 3 94 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 17 - u - - - ML 95 94 3 97 3 1 1 15 33 -11.517 -0.134 -3.503 0.405 -0.973 -1.078 0.759 D 96 94 3 97 3 0 0 14 33 -8.990 -4.503 -0.068 IL 97 97 3 97 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 18 - a - - - ML 98 97 3 100 3 1 1 14 32 -11.386 -0.248 -2.667 0.758 -0.776 -1.959 0.554 D 99 97 3 100 3 0 0 13 31 -10.220 -5.733 -0.029 IL 100 100 3 100 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 19 - u - - - ML 101 100 3 103 3 1 1 13 31 -11.140 -0.231 -2.762 -0.647 0.415 -0.545 0.425 D 102 100 3 103 3 0 0 11 29 -11.175 -6.688 -0.015 IL 103 103 3 103 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 20 - c - - - ML 104 103 3 106 3 1 1 11 29 -10.912 -0.131 -3.532 -0.447 0.893 -1.241 -0.020 D 105 103 3 106 3 0 0 9 28 -11.642 -7.155 -0.011 IL 106 106 3 106 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 21 - g - - - ML 107 106 3 109 2 1 1 1 1 * 0.000 0.043 -0.601 0.622 -0.374 D 108 106 3 109 2 0 0 0 0 * 0.000 IL 109 109 3 109 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 30 ] - - - - - - E 110 109 3 -1 0 0 0 0 0 [ BEGR 31 ] - - - - - - S 111 39 1 112 5 0 0 359 742 -10.545 -0.004 -10.361 -10.573 -11.464 IL 112 112 2 112 5 1 1 360 743 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 81 236 G C - - MP 113 112 2 117 6 2 2 359 742 -11.614 -11.553 -0.018 -10.330 -10.609 -6.625 -7.946 -6.162 -8.273 -2.786 -10.140 -8.628 -5.318 -8.297 -7.348 3.147 -7.851 2.784 -5.385 -8.443 -7.323 -6.887 ML 114 112 2 117 6 1 1 357 740 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 115 112 2 117 6 1 1 356 739 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 116 112 2 117 6 0 0 353 736 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 117 117 5 117 6 1 1 358 741 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 118 118 6 118 5 1 1 358 741 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 82 235 G C - - MP 119 118 6 123 6 2 2 357 740 -11.600 -11.539 -0.012 -10.316 -8.222 -8.286 -9.481 -6.167 -11.551 -3.619 -11.088 -7.346 -5.445 -11.099 -7.531 3.980 -7.729 -4.089 -5.810 -7.807 -7.876 -10.532 ML 120 118 6 123 6 1 1 355 738 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 121 118 6 123 6 1 1 354 737 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 122 118 6 123 6 0 0 352 735 -9.996 -8.694 -0.928 -5.173 -5.191 -1.266 IL 123 123 5 123 6 1 1 356 739 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 124 124 6 124 5 1 1 356 739 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 83 234 G C - - MP 125 124 6 129 6 2 2 355 738 -11.606 -11.545 -0.021 -6.311 -10.602 -10.997 -6.634 -5.151 -6.562 1.886 -7.801 -7.093 -2.878 -7.105 -6.626 3.477 -6.960 -0.592 -3.120 -6.461 -2.880 -5.456 ML 126 124 6 129 6 1 1 353 736 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 127 124 6 129 6 1 1 352 735 -7.221 -5.950 -1.859 -5.928 -0.670 -4.142 0.082 0.237 -0.604 0.144 D 128 124 6 129 6 0 0 346 729 -9.380 -8.079 -1.871 -4.558 -4.575 -0.651 IL 129 129 5 129 6 1 1 354 737 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 130 130 6 130 5 1 1 354 737 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 84 233 c g - - MP 131 130 6 135 6 2 2 353 736 -11.593 -11.532 -0.141 -10.309 -5.492 -3.849 -6.244 -5.970 -6.205 -0.056 -5.031 -6.985 2.952 -5.708 -6.081 -1.123 -2.183 -3.561 2.593 -6.410 -1.566 -4.807 ML 132 130 6 135 6 1 1 352 735 -7.166 -7.513 -0.548 -1.921 -7.362 -4.892 -0.457 -0.671 -1.107 1.124 MR 133 130 6 135 6 1 1 351 734 -7.221 -5.950 -1.859 -5.928 -0.670 -4.142 0.190 -0.684 0.433 -0.174 D 134 130 6 135 6 0 0 341 724 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 135 135 5 135 6 1 1 353 736 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 136 136 6 136 5 1 1 353 736 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 85 232 g c - - MP 137 136 6 141 6 2 2 352 735 -11.475 -11.414 -0.048 -10.191 -10.470 -5.038 -5.540 -2.966 -5.374 1.345 -6.373 -5.983 -0.542 -6.023 -3.459 2.679 -6.051 0.417 2.185 -5.243 -3.520 -4.339 ML 138 136 6 141 6 1 1 349 732 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 139 136 6 141 6 1 1 349 732 -8.350 -7.079 -2.988 -7.057 -0.560 -2.493 0.776 -0.128 -0.920 -0.245 D 140 136 6 141 6 0 0 338 721 -11.962 -10.660 -6.457 -7.139 -7.157 -0.039 IL 141 141 5 141 6 1 1 351 734 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 142 142 6 142 5 1 1 351 734 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 86 231 g c - - MP 143 142 6 147 6 2 2 350 733 -11.431 -11.370 -0.600 -5.770 -3.129 -2.272 -5.828 -5.544 -5.825 -0.796 -2.996 -6.649 1.899 -5.370 -5.699 2.345 -6.205 -3.143 2.018 -6.009 1.099 -4.433 ML 144 142 6 147 6 1 1 346 729 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 145 142 6 147 6 1 1 350 733 -8.113 -6.842 -2.751 -6.820 -0.322 -5.034 0.743 -0.748 -0.830 0.224 D 146 142 6 147 6 0 0 338 721 -12.470 -11.169 -6.966 -7.648 -7.665 -0.027 IL 147 147 5 147 6 1 1 351 734 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 148 148 6 148 5 1 1 352 735 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 87 230 u g - - MP 149 148 6 153 6 2 2 351 734 -10.837 -10.776 -0.299 -9.553 -9.833 -2.446 -2.486 -2.698 -0.514 1.431 -2.673 -3.535 0.885 -3.033 -2.411 0.663 0.481 -0.263 0.977 -1.312 1.778 -1.953 ML 150 148 6 153 6 1 1 340 723 -7.362 -7.708 -2.028 -2.117 -7.558 -0.977 1.152 -1.145 -0.596 -0.592 MR 151 148 6 153 6 1 1 349 732 -10.117 -8.846 -0.433 -8.824 -3.958 -2.397 -0.837 -1.915 1.416 -0.981 D 152 148 6 153 6 0 0 338 721 -13.867 -12.566 -8.363 -9.045 -9.062 -0.010 IL 153 153 5 153 6 1 1 350 733 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 154 154 6 154 5 1 1 350 733 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 88 229 g c - - MP 155 154 6 159 4 2 2 351 734 -0.223 -6.713 -2.936 -8.356 -0.473 -3.069 -3.233 0.377 -3.242 -4.058 0.592 -3.574 -1.798 2.506 -3.868 -0.977 2.064 -2.416 -0.149 -2.442 ML 156 154 6 159 4 1 1 308 690 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 157 154 6 159 4 1 1 300 683 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 158 154 6 159 4 0 0 338 721 -1.419 -2.192 -1.360 -5.822 IL 159 159 5 159 4 1 1 352 735 -0.167 -3.216 -9.090 -13.262 0.000 0.000 0.000 0.000 IR 160 160 6 160 3 1 1 341 724 -0.069 -4.416 -12.996 0.000 0.000 0.000 0.000 [ MATL 40 ] 121 - a - - - ML 161 160 6 163 3 1 1 16 34 -11.596 -0.002 -10.250 0.887 -1.201 -0.302 -0.145 D 162 160 6 163 3 0 0 17 36 -6.174 -1.687 -0.566 IL 163 163 3 163 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 122 - a - - - ML 164 163 3 166 3 1 1 15 33 -11.596 -0.002 -10.250 0.476 -0.115 -0.897 0.201 D 165 163 3 166 3 0 0 16 35 -6.174 -1.687 -0.566 IL 166 166 3 166 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 123 - u - - - ML 167 166 3 169 3 1 1 14 32 -11.596 -0.217 -2.845 -0.114 0.416 -1.684 0.516 D 168 166 3 169 3 0 0 15 33 -6.174 -1.687 -0.566 IL 169 169 3 169 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 124 - a - - - ML 170 169 3 172 3 1 1 12 31 -11.381 -0.229 -2.775 0.585 -1.023 0.261 -0.306 D 171 169 3 172 3 0 0 12 30 -10.249 -5.762 -0.028 IL 172 172 3 172 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 125 - c - - - ML 173 172 3 175 3 1 1 11 29 -11.154 -0.374 -2.135 0.281 0.383 -0.212 -0.694 D 174 172 3 175 3 0 0 10 28 -11.137 -6.650 -0.015 IL 175 175 3 175 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 126 - a - - - ML 176 175 3 178 2 1 1 1 1 * 0.000 0.383 0.376 -1.975 0.194 D 177 175 3 178 2 0 0 0 0 * 0.000 IL 178 178 3 178 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 46 ] - - - - - - E 179 178 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME S4-Clostridia ACC RF03140 DESC S4-Clostridia ribosomal protein leader LENG 57 MAXL 453 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 9 14:10:55 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED NSEQ 140 EFFN 140.000000 CKSUM 3758985946 STATS LOCAL MSV -7.7922 0.72365 STATS LOCAL VITERBI -8.9554 0.72365 STATS LOCAL FORWARD -3.5294 0.72365 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.35500 1.46116 1.28611 1.45353 1.38629 1.38629 1.38629 1.38629 0.00141 7.25982 7.25982 1.46634 0.26236 0.00000 * 1 4.83424 7.98730 0.00902 7.28185 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.00141 7.25982 7.25982 1.46634 0.26236 1.09861 0.40547 2 0.02279 7.35048 7.10519 3.86011 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.00141 7.25982 7.25982 1.46634 0.26236 1.09861 0.40547 3 0.00176 7.79090 7.26312 7.34243 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.00141 7.25982 7.25982 1.46634 0.26236 1.09861 0.40547 4 0.02322 7.48645 3.83400 7.17023 4 A - - : 1.38629 1.38629 1.38629 1.38629 0.00141 7.25982 7.25982 1.46634 0.26236 1.09861 0.40547 5 2.95577 7.21027 0.07969 3.73707 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.00141 7.25982 7.25982 1.46634 0.26236 1.09861 0.40547 6 2.07225 7.18332 0.13633 7.14771 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.00141 7.25982 7.25982 1.46634 0.26236 1.09861 0.40547 7 3.80480 1.09196 0.94346 1.37476 7 g - - < 1.38629 1.38629 1.38629 1.38629 0.00141 7.25982 7.25982 1.46634 0.26236 1.09861 0.40547 8 4.33465 0.69664 4.47727 0.73967 8 c - - < 1.38629 1.38629 1.38629 1.38629 0.00141 7.25982 7.25982 1.46634 0.26236 1.09861 0.40547 9 1.51823 5.49930 0.27128 4.24025 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.00141 7.25982 7.25982 1.46634 0.26236 1.09861 0.40547 10 4.45579 1.08539 2.17759 0.62119 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.07118 7.25982 2.68819 1.46634 0.26236 1.09861 0.40547 11 1.21967 2.16905 0.58883 3.34075 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.33752 7.19015 1.25279 1.46634 0.26236 2.81576 0.06173 12 2.03946 1.53548 1.77581 0.72319 12 u - - < 1.38629 1.38629 1.38629 1.38629 0.84183 0.56558 6.85990 0.31201 1.31668 0.00425 5.46325 13 1.12610 2.16253 1.28807 1.25573 15 a - - _ 1.38629 1.38629 1.38629 1.38629 0.05705 7.25982 2.90497 1.46634 0.26236 1.09861 0.40547 14 0.89111 2.50080 1.86496 1.04163 16 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00149 7.20426 7.20426 1.46634 0.26236 4.38022 0.01260 15 1.09488 2.13160 2.21301 0.82690 17 u - - _ 1.38629 1.38629 1.38629 1.38629 0.09560 7.20426 2.40320 1.46634 0.26236 4.38022 0.01260 16 0.82608 1.97131 3.04108 0.98035 18 a - - _ 1.38629 1.38629 1.38629 1.38629 0.17762 7.11029 1.82063 1.46634 0.26236 5.30079 0.00500 17 1.97300 1.04926 1.76207 1.08154 19 c - - _ 1.38629 1.38629 1.38629 1.38629 0.16645 6.93462 1.88150 1.46634 0.26236 5.98587 0.00252 18 1.76748 0.70164 2.31831 1.44805 20 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03448 6.77047 3.41897 1.46634 0.26236 0.65107 0.73707 19 1.38379 1.81783 0.88231 1.75348 21 g - - _ 1.38629 1.38629 1.38629 1.38629 1.38145 0.38174 2.71636 2.47521 0.08790 0.16254 1.89701 20 1.06541 1.76997 1.15372 1.77423 72 a - - > 1.38629 1.38629 1.38629 1.38629 0.07087 7.17486 2.69338 1.46634 0.26236 0.04676 3.08610 21 4.25053 0.66557 2.46067 0.95092 73 C - - > 1.38629 1.38629 1.38629 1.38629 0.00150 7.19384 7.19384 1.46634 0.26236 0.02155 3.84794 22 0.85079 2.18789 0.79027 4.95502 74 g - - > 1.38629 1.38629 1.38629 1.38629 0.01722 4.11256 7.25982 0.08383 2.52060 1.09861 0.40547 23 4.32005 0.41287 3.77245 1.19746 76 C - - > 1.38629 1.38629 1.38629 1.38629 0.00141 7.25982 7.25982 1.46634 0.26236 1.09861 0.40547 24 1.24628 5.58252 0.37043 4.00473 77 G - - > 1.38629 1.38629 1.38629 1.38629 0.00141 7.25982 7.25982 1.46634 0.26236 1.09861 0.40547 25 2.41729 1.04645 0.69562 2.79866 78 g - - > 1.38629 1.38629 1.38629 1.38629 0.00141 7.25982 7.25982 1.46634 0.26236 1.09861 0.40547 26 7.14834 0.13766 7.05704 2.06393 79 C - - > 1.38629 1.38629 1.38629 1.38629 0.00141 7.25982 7.25982 1.46634 0.26236 1.09861 0.40547 27 6.87557 2.83649 6.90691 0.06258 80 U - - > 1.38629 1.38629 1.38629 1.38629 0.00141 7.25982 7.25982 1.46634 0.26236 1.09861 0.40547 28 5.66883 7.24952 0.00509 7.00105 81 G - - < 1.38629 1.38629 1.38629 1.38629 0.01251 7.25982 4.44548 1.46634 0.26236 1.09861 0.40547 29 6.08255 7.19763 0.00375 7.24284 82 G - - < 1.38629 1.38629 1.38629 1.38629 0.00765 7.24873 4.97439 1.46634 0.26236 0.11323 2.23442 30 1.43396 6.63706 0.28555 4.74175 83 G - - < 1.38629 1.38629 1.38629 1.38629 0.00142 7.25367 7.25367 1.46634 0.26236 0.78107 0.61233 31 2.91906 0.69615 3.44870 0.87772 84 c - - < 1.38629 1.38629 1.38629 1.38629 0.10948 7.25675 2.27310 1.46634 0.26236 1.99525 0.14616 32 1.81531 3.37727 0.73585 1.12709 85 g - - < 1.38629 1.38629 1.38629 1.38629 0.03695 7.14885 3.33845 1.46634 0.26236 5.02625 0.00658 33 3.71273 1.48070 1.05873 0.91326 86 u - - < 1.38629 1.38629 1.38629 1.38629 0.46991 7.11353 0.98316 1.46634 0.26236 5.28081 0.00510 34 1.37998 2.38630 1.36330 0.91471 87 u - - < 1.38629 1.38629 1.38629 1.38629 0.25855 6.64622 1.48486 1.46634 0.26236 0.50032 0.93226 35 2.22029 2.84793 0.75577 1.01113 88 g - - < 1.38629 1.38629 1.38629 1.38629 2.52428 0.08460 6.90043 2.19459 0.11811 0.00464 5.37598 36 0.73373 2.31337 1.58563 1.53184 121 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00141 7.25982 7.25982 1.46634 0.26236 1.09861 0.40547 37 1.04142 1.44676 2.05761 1.25894 122 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00141 7.25982 7.25982 1.46634 0.26236 1.09861 0.40547 38 1.49021 1.06426 2.70056 1.01466 123 u - - _ 1.38629 1.38629 1.38629 1.38629 0.15458 7.25982 1.94826 1.46634 0.26236 1.09861 0.40547 39 0.95516 2.17058 1.15990 1.67333 124 a - - _ 1.38629 1.38629 1.38629 1.38629 0.16380 7.10688 1.89535 1.46634 0.26236 5.32138 0.00490 40 1.19098 1.05895 1.51016 2.05272 125 c - - _ 1.38629 1.38629 1.38629 1.38629 0.19692 6.94501 1.72723 1.46634 0.26236 0.24860 1.51364 41 1.09558 1.07514 3.14219 1.26862 126 c - - _ 1.38629 1.38629 1.38629 1.38629 1.85126 0.23234 2.99002 3.20682 0.04133 1.67174 0.20816 42 0.98286 0.81915 2.21682 2.57700 229 c - - > 1.38629 1.38629 1.38629 1.38629 0.41144 7.04567 1.08936 1.46634 0.26236 0.45871 0.99995 43 2.17137 2.28916 0.55543 1.55683 230 G - - > 1.38629 1.38629 1.38629 1.38629 0.00214 6.84254 6.84254 1.46634 0.26236 0.41643 1.07704 44 1.31207 1.07883 1.02623 3.42998 231 g - - > 1.38629 1.38629 1.38629 1.38629 0.00159 7.13707 7.13707 1.46634 0.26236 1.11518 0.39728 45 1.10118 0.93505 3.29699 1.43564 232 c - - > 1.38629 1.38629 1.38629 1.38629 0.01622 7.17899 4.17796 1.46634 0.26236 0.01779 4.03798 46 0.92705 4.15251 0.62931 2.88958 233 G - - > 1.38629 1.38629 1.38629 1.38629 0.00455 7.24629 5.56594 1.46634 0.26236 0.09483 2.40271 47 6.25665 0.33761 4.71523 1.28862 234 C - - > 1.38629 1.38629 1.38629 1.38629 0.01255 7.25674 4.44241 1.46634 0.26236 0.31672 1.30393 48 7.29715 0.00471 7.13633 5.73758 235 C - - > 1.38629 1.38629 1.38629 1.38629 0.00142 7.24873 7.24873 1.46634 0.26236 0.11323 2.23442 49 7.14824 0.60303 7.07332 0.79581 236 C - - > 1.38629 1.38629 1.38629 1.38629 0.00141 7.25982 7.25982 1.46634 0.26236 1.09861 0.40547 50 7.61644 0.00191 7.99565 6.83049 237 C - - : 1.38629 1.38629 1.38629 1.38629 0.00141 7.25982 7.25982 1.46634 0.26236 1.09861 0.40547 51 0.04742 7.02007 6.97014 3.11267 238 A - - : 1.38629 1.38629 1.38629 1.38629 0.00141 7.25982 7.25982 1.46634 0.26236 1.09861 0.40547 52 0.19469 4.69058 1.98559 3.49229 239 A - - : 1.38629 1.38629 1.38629 1.38629 0.09378 2.42124 7.25982 1.07230 0.41889 1.09861 0.40547 53 7.12360 4.47093 7.70107 0.01278 244 U - - : 1.38629 1.38629 1.38629 1.38629 0.00141 7.25982 7.25982 1.46634 0.26236 1.09861 0.40547 54 6.80698 3.58373 7.35407 0.02996 245 U - - : 1.38629 1.38629 1.38629 1.38629 0.00141 7.25982 7.25982 1.46634 0.26236 1.09861 0.40547 55 0.18602 5.37888 4.32057 1.88496 246 A - - : 1.38629 1.38629 1.38629 1.38629 0.00599 7.25982 5.24656 1.46634 0.26236 1.09861 0.40547 56 1.02593 6.95361 0.44712 6.79722 247 G - - : 1.38629 1.38629 1.38629 1.38629 0.00141 7.25525 7.25525 1.46634 0.26236 0.23674 1.55684 57 1.12198 5.79586 0.50549 2.68653 248 G - - : 1.38629 1.38629 1.38629 1.38629 0.00070 7.25912 * 1.46634 0.26236 0.00000 * //