INFERNAL1/a [1.1.5 | Sep 2023] NAME L19-Flavobacteria ACC RF03130 DESC L19-Flavobacteria ribosomal protein leader STATES 91 NODES 22 CLEN 29 W 40 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 9 05:38:32 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03130/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 460 EFFN 460.000000 CKSUM 1501523951 NULL 0.000 0.000 0.000 0.000 GA 31.50 TC 31.50 NC 31.40 EFP7GF -19.5804 0.72981 ECMLC 0.62225 -5.39230 4.33555 1600000 510559 0.002350 ECMGC 0.43135 -22.28427 -7.42885 1600000 242633 0.001649 ECMLI 0.59630 -5.40217 4.62596 1600000 474416 0.002529 ECMGI 0.45107 -20.27531 -6.36704 1600000 212150 0.001885 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 40 57 -14.770 -14.709 -0.000 -13.485 -13.765 -14.160 IL 1 1 2 1 6 1 4 43 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 4 42 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 37 c g - - MP 3 2 3 7 6 2 11 40 57 -14.770 -14.709 -0.000 -13.485 -13.765 -14.160 -9.091 -2.836 -9.090 -1.273 -5.369 -9.930 2.816 -8.607 -8.948 -1.196 -9.461 -6.361 1.021 -6.839 2.543 -4.211 ML 4 2 3 7 6 1 4 40 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 4 40 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 1 38 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 4 41 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 4 40 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 36 A U - - MP 9 8 6 13 6 2 10 38 55 -14.770 -14.709 -0.000 -13.485 -13.765 -14.160 -10.802 -1.277 -10.997 3.931 -13.127 -14.286 -8.587 -11.039 -10.557 -6.124 -11.227 -6.749 -8.517 -12.302 -10.419 -1.711 ML 10 8 6 13 6 1 3 39 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 3 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 1 37 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 4 39 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 4 38 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 35 A U - - MP 15 14 6 19 6 2 8 36 53 -14.770 -14.709 -0.000 -13.485 -13.765 -14.160 -10.802 -9.462 -10.997 3.944 -13.129 -14.288 -8.589 -11.039 -10.557 -0.758 -11.227 -6.749 -8.518 -12.302 -10.420 -9.595 ML 16 14 6 19 6 1 3 38 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 3 38 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 1 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 4 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 4 37 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 34 C G - - MP 21 20 6 25 4 2 6 34 51 -13.982 -14.189 -0.003 -9.154 -12.711 -12.953 -8.365 -12.378 -6.600 -7.849 3.998 -13.807 -14.488 -11.115 -7.874 -12.923 -9.619 -13.578 -10.785 -13.042 ML 22 20 6 25 4 1 3 38 56 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 4 1 2 37 56 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 24 20 6 25 4 0 0 36 55 -4.568 -4.250 -2.265 -0.520 IL 25 25 5 25 4 1 3 39 57 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 26 26 6 26 3 1 3 38 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - C - - - ML 27 26 6 29 3 1 6 32 49 -14.890 -0.000 -13.544 -11.177 1.999 -11.897 -9.759 D 28 26 6 29 3 0 0 32 50 -7.657 -0.409 -2.048 IL 29 29 3 29 3 1 2 37 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 30 29 3 32 3 1 5 31 48 -14.892 -0.000 -13.547 -2.455 -7.535 -1.002 1.728 D 31 29 3 32 3 0 0 32 50 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 2 36 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - C - - - ML 33 32 3 35 3 1 5 30 46 -15.186 -0.000 -13.504 -11.180 1.999 -11.900 -9.761 D 34 32 3 35 3 0 0 30 48 -5.620 -0.734 -1.403 IL 35 35 3 35 3 1 1 32 48 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 33 - U - - MR 36 35 3 38 5 1 5 29 45 -13.827 -0.000 -13.642 -13.855 -14.746 -2.503 -1.278 -8.413 1.769 D 37 35 3 38 5 0 0 30 49 -5.352 -0.707 -2.978 -4.409 -2.404 IR 38 38 3 38 5 1 1 31 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 8 32 U A - - MP 39 38 3 43 4 2 5 28 44 -13.982 -14.189 -0.000 -12.604 -12.437 -12.100 -12.319 -11.692 -10.510 -12.175 -11.131 -12.007 -10.409 -11.693 -12.515 -12.012 3.996 -10.505 -5.743 -5.527 ML 40 38 3 43 4 1 1 32 50 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 41 38 3 43 4 1 1 31 50 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 42 38 3 43 4 0 0 30 49 -4.568 -4.250 -2.265 -0.520 IL 43 43 5 43 4 1 1 33 51 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 44 44 6 44 3 1 1 32 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - G - - - ML 45 44 6 47 3 1 3 26 42 -15.186 -0.000 -13.504 -2.946 -11.183 1.952 -10.166 D 46 44 6 47 3 0 0 25 41 -5.620 -0.734 -1.403 IL 47 47 3 47 3 1 1 28 43 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 31 - A - - MR 48 47 3 50 3 1 3 25 41 -15.186 -0.000 -13.504 1.474 -1.810 -1.909 -0.576 D 49 47 3 50 3 0 0 24 39 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 1 27 42 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 30 - G - - MR 51 50 3 53 5 1 3 24 40 -13.827 -0.000 -13.642 -13.855 -14.746 -3.651 -10.769 1.949 -4.113 D 52 50 3 53 5 0 0 23 38 -5.352 -0.707 -2.978 -4.409 -2.404 IR 53 53 3 53 5 1 1 25 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 10 29 a u - - MP 54 53 3 58 6 2 4 23 39 -14.770 -14.709 -0.000 -13.485 -13.765 -14.160 -10.802 -9.462 -10.997 2.896 -13.138 -14.293 -8.596 -11.039 -10.557 0.371 -11.227 2.859 -8.520 -12.302 -10.426 -9.595 ML 55 53 3 58 6 1 1 22 37 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 3 58 6 1 1 22 37 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 3 58 6 0 0 20 35 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 1 23 38 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 1 23 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 11 28 C G - - MP 60 59 6 64 6 2 2 21 37 -14.770 -14.709 -0.056 -13.485 -13.765 -4.725 -11.808 -12.072 -11.129 -1.137 -9.483 -11.277 3.872 -10.396 -11.230 -8.288 -11.352 -10.448 -0.169 -11.647 -7.186 -10.033 ML 61 59 6 64 6 1 1 20 35 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 1 20 36 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 0 18 33 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 1 22 37 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 1 21 36 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 12 27 G C - - MP 66 65 6 70 6 2 2 19 35 -14.714 -14.653 -0.804 -13.430 -13.710 -1.228 -12.160 -2.832 -13.260 0.907 -13.931 -10.609 -0.542 -13.161 -10.611 3.732 -10.862 -7.111 -8.794 -10.993 -10.822 -12.007 ML 67 65 6 70 6 1 1 19 34 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 1 18 35 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 0 17 32 -14.109 -12.808 -8.605 -9.287 -9.304 -0.009 IL 70 70 5 70 6 1 1 20 35 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 1 19 35 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 26 A U - - MP 72 71 6 76 4 2 2 18 33 -4.210 -3.929 -0.184 -11.730 -9.929 -8.589 -10.123 3.827 -12.254 -13.413 -7.714 -10.165 -9.684 -0.263 -10.353 -2.890 -0.273 -11.428 -9.546 -8.722 ML 73 71 6 76 4 1 1 17 33 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 4 1 1 17 34 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 75 71 6 76 4 0 0 17 32 -13.062 -0.179 -3.127 -9.014 IL 76 76 5 76 4 1 1 18 33 -5.846 -0.067 -5.278 -9.015 0.000 0.000 0.000 0.000 IR 77 77 6 77 3 1 1 17 32 -1.867 -0.463 -11.656 0.000 0.000 0.000 0.000 [ MATL 17 ] 15 - A - - - ML 78 77 6 80 3 1 1 11 30 -14.892 -0.000 -13.547 1.490 -2.402 -1.661 -0.543 D 79 77 6 80 3 0 0 15 34 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 16 - A - - - ML 81 80 3 83 3 1 1 10 28 -14.892 -0.000 -13.547 1.145 -1.374 -0.557 -0.467 D 82 80 3 83 3 0 0 14 33 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 17 - A - - - ML 84 83 3 86 3 1 1 8 27 -14.892 -0.881 -1.130 1.555 -2.278 -0.656 -2.183 D 85 83 3 86 3 0 0 13 32 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 18 - u - - - ML 87 86 3 89 2 1 1 1 1 * 0.000 -0.088 -2.121 0.123 0.799 D 88 86 3 89 2 0 0 0 0 * 0.000 IL 89 89 3 89 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 21 ] - - - - - - E 90 89 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME L19-Flavobacteria ACC RF03130 DESC L19-Flavobacteria ribosomal protein leader LENG 29 MAXL 72 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 9 05:38:32 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03130/CM NSEQ 460 EFFN 89.419098 CKSUM 1501523951 STATS LOCAL MSV -6.4356 0.72981 STATS LOCAL VITERBI -7.0697 0.72981 STATS LOCAL FORWARD -3.6711 0.72981 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.35265 1.55662 1.40258 1.25654 1.38629 1.38629 1.38629 1.38629 0.00043 8.43858 8.43858 1.46634 0.26236 0.00000 * 1 3.13872 0.83463 3.18766 0.73115 1 u - - < 1.38629 1.38629 1.38629 1.38629 0.00043 8.43858 8.43858 1.46634 0.26236 1.09861 0.40547 2 0.03007 6.75392 4.83187 3.88819 2 A - - < 1.38629 1.38629 1.38629 1.38629 0.00043 8.43858 8.43858 1.46634 0.26236 1.09861 0.40547 3 0.04765 6.72795 3.13408 6.32246 3 A - - < 1.38629 1.38629 1.38629 1.38629 0.00043 8.43858 8.43858 1.46634 0.26236 1.09861 0.40547 4 7.43198 0.00202 7.42390 7.09959 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.00205 8.43858 6.30483 1.46634 0.26236 1.09861 0.40547 5 7.05972 0.00324 7.40842 6.33584 5 C - - - 1.38629 1.38629 1.38629 1.38629 0.00043 8.43697 8.43697 1.46634 0.26236 0.21251 1.65312 6 3.03924 5.00477 2.11721 0.19230 6 U - - - 1.38629 1.38629 1.38629 1.38629 0.00043 8.43858 8.43858 1.46634 0.26236 1.09861 0.40547 7 7.06167 0.00324 7.41045 6.33759 7 C - - - 1.38629 1.38629 1.38629 1.38629 0.00043 8.43858 8.43858 1.46634 0.26236 1.09861 0.40547 8 8.23706 7.91510 8.30972 0.00088 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.00043 8.43858 8.43858 1.46634 0.26236 1.09861 0.40547 9 3.44523 7.44705 0.03419 6.78602 9 G - - - 1.38629 1.38629 1.38629 1.38629 0.00043 8.43858 8.43858 1.46634 0.26236 1.09861 0.40547 10 0.76765 6.78984 0.62912 6.37064 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.00043 8.43858 8.43858 1.46634 0.26236 1.09861 0.40547 11 3.52942 0.09640 6.38843 2.79858 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.03081 8.43858 3.50229 1.46634 0.26236 1.09861 0.40547 12 2.08991 3.15914 0.18491 5.92844 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.55836 8.40821 0.84950 1.46634 0.26236 4.95056 0.00710 13 0.13532 6.08467 2.64739 2.92908 13 A - - < 1.38629 1.38629 1.38629 1.38629 0.05445 2.94492 7.85063 0.01474 4.22434 0.00097 6.93617 14 0.37148 2.92866 2.49391 1.74737 15 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00043 8.43858 8.43858 1.46634 0.26236 1.09861 0.40547 15 0.62118 2.27590 1.76812 1.66425 16 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00043 8.43858 8.43858 1.46634 0.26236 1.09861 0.40547 16 0.31609 2.90196 1.85674 2.81486 17 A - - _ 1.38629 1.38629 1.38629 1.38629 0.62567 8.43858 0.76598 1.46634 0.26236 1.09861 0.40547 17 1.41065 2.60176 1.33873 0.86822 18 u - - _ 1.38629 1.38629 1.38629 1.38629 0.26469 2.01242 2.31369 1.13535 0.38759 0.00093 6.98039 18 2.93728 2.83679 5.84701 0.12162 26 U - - > 1.38629 1.38629 1.38629 1.38629 0.00669 8.38442 5.04471 1.46634 0.26236 0.61289 0.78041 19 6.11081 0.17788 3.15007 2.13802 27 C - - > 1.38629 1.38629 1.38629 1.38629 0.00045 8.40821 8.40821 1.46634 0.26236 0.01426 4.25741 20 2.83021 6.53426 0.09451 3.51577 28 G - - > 1.38629 1.38629 1.38629 1.38629 0.00043 8.43858 8.43858 1.46634 0.26236 1.09861 0.40547 21 6.55569 2.47763 6.55036 0.09079 29 U - - > 1.38629 1.38629 1.38629 1.38629 0.00043 8.43858 8.43858 1.46634 0.26236 1.09861 0.40547 22 3.87286 6.94361 0.03730 4.20967 30 G - - - 1.38629 1.38629 1.38629 1.38629 0.00043 8.43858 8.43858 1.46634 0.26236 1.09861 0.40547 23 0.38412 2.57206 2.64133 1.76430 31 A - - - 1.38629 1.38629 1.38629 1.38629 0.00043 8.43858 8.43858 1.46634 0.26236 1.09861 0.40547 24 0.00330 8.52195 6.49161 6.45075 32 A - - > 1.38629 1.38629 1.38629 1.38629 0.00043 8.43858 8.43858 1.46634 0.26236 1.09861 0.40547 25 3.07210 2.27650 5.61547 0.16559 33 U - - - 1.38629 1.38629 1.38629 1.38629 0.00043 8.43858 8.43858 1.46634 0.26236 1.09861 0.40547 26 6.62891 7.49663 0.00225 7.88850 34 G - - > 1.38629 1.38629 1.38629 1.38629 0.00043 8.43858 8.43858 1.46634 0.26236 1.09861 0.40547 27 6.47960 3.20029 6.48692 0.04480 35 U - - > 1.38629 1.38629 1.38629 1.38629 0.00043 8.43858 8.43858 1.46634 0.26236 1.09861 0.40547 28 6.51224 3.48975 6.51147 0.03405 36 U - - > 1.38629 1.38629 1.38629 1.38629 0.00043 8.43858 8.43858 1.46634 0.26236 1.09861 0.40547 29 1.97397 3.07038 0.25822 3.16381 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.00022 8.43837 * 1.46634 0.26236 0.00000 * //