INFERNAL1/a [1.1.5 | Sep 2023] NAME L20-Deltaproteobacteria ACC RF03126 DESC L20-Deltaproteobacteria ribosomal protein leader STATES 181 NODES 48 CLEN 59 W 285 ALPH RNA RF no CONS yes MAP yes DATE Fri Jul 5 04:55:24 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03126/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 117 EFFN 6.152069 CKSUM 3704912155 NULL 0.000 0.000 0.000 0.000 GA 42.80 TC 46.00 NC 36.00 EFP7GF -13.4997 0.71915 ECMLC 0.55467 -9.89173 1.32720 1600000 604950 0.001984 ECMGC 0.41842 -17.98502 -4.29880 1600000 122764 0.003258 ECMLI 0.59891 -6.66466 3.17655 1600000 435438 0.002756 ECMGI 0.44696 -13.32713 -1.21943 1600000 89599 0.004464 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 285 557 -8.085 -8.292 -0.024 -6.706 IL 1 1 2 1 4 1 13 287 559 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 12 287 559 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - g - - - ML 3 2 3 5 3 1 12 285 558 -9.044 -0.010 -7.698 -0.022 -0.980 0.806 -0.396 D 4 2 3 5 3 0 7 283 555 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 11 286 558 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - u - - - ML 6 5 3 8 3 1 11 284 557 -9.384 -0.009 -7.701 -0.027 -0.128 -0.086 0.216 D 7 5 3 8 3 0 7 282 554 -5.620 -0.734 -1.403 IL 8 8 3 8 3 1 10 285 557 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 126 - G - - MR 9 8 3 11 3 1 11 283 556 -9.384 -0.009 -7.701 -3.539 -4.981 1.938 -4.279 D 10 8 3 11 3 0 5 279 551 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 9 283 556 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 125 - A - - MR 12 11 3 14 3 1 10 282 555 -9.384 -0.009 -7.701 1.937 -4.419 -3.890 -4.135 D 13 11 3 14 3 0 4 276 548 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 9 282 555 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 124 - G - - MR 15 14 3 17 3 1 9 282 554 -9.384 -0.009 -7.701 -3.539 -4.981 1.938 -4.279 D 16 14 3 17 3 0 4 272 545 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 8 281 553 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 123 - G - - MR 18 17 3 20 3 1 8 281 553 -9.384 -0.009 -7.701 -3.539 -4.981 1.938 -4.279 D 19 17 3 20 3 0 3 265 537 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 7 280 552 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 122 - A - - MR 21 20 3 23 3 1 7 280 552 -0.807 -1.342 -4.878 1.937 -4.419 -3.890 -4.135 D 22 20 3 23 3 0 2 221 494 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 7 287 559 -0.098 -4.926 -4.943 0.000 0.000 0.000 0.000 [ MATR 8 ] - 59 - a - - MR 24 23 3 26 3 1 9 70 92 -8.742 -0.014 -7.059 0.696 -0.374 -0.544 -0.116 D 25 23 3 26 3 0 2 67 89 -9.219 -3.091 -0.183 IR 26 26 3 26 3 1 7 71 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 58 - a - - MR 27 26 3 29 3 1 9 69 91 -8.806 -0.014 -7.124 0.978 -0.771 -0.552 -0.393 D 28 26 3 29 3 0 2 66 87 -9.115 -4.293 -0.078 IR 29 29 3 29 3 1 7 70 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 57 - a - - MR 30 29 3 32 3 1 9 68 90 -8.806 -0.014 -7.124 0.640 -0.507 -0.981 0.300 D 31 29 3 32 3 0 2 65 86 -9.115 -4.293 -0.078 IR 32 32 3 32 3 1 7 69 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 56 - a - - MR 33 32 3 35 3 1 9 67 89 -8.806 -0.014 -7.124 0.430 0.101 -0.725 -0.036 D 34 32 3 35 3 0 2 64 85 -9.115 -4.293 -0.078 IR 35 35 3 35 3 1 6 68 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 55 - a - - MR 36 35 3 38 3 1 9 66 88 -8.806 -0.014 -7.124 0.428 0.170 -0.757 -0.092 D 37 35 3 38 3 0 2 63 85 -9.115 -3.395 -0.147 IR 38 38 3 38 3 1 6 67 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 54 - a - - MR 39 38 3 41 3 1 8 65 87 -8.842 -0.013 -7.160 0.934 -0.009 -1.396 -0.482 D 40 38 3 41 3 0 2 62 83 -9.050 -4.228 -0.082 IR 41 41 3 41 3 1 6 66 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 53 - A - - MR 42 41 3 44 3 1 8 64 86 -8.842 -0.013 -7.160 1.127 -0.623 -1.396 -0.345 D 43 41 3 44 3 0 2 61 83 -9.050 -4.228 -0.082 IR 44 44 3 44 3 1 6 65 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 52 - u - - MR 45 44 3 47 3 1 7 63 85 -8.842 -0.013 -7.160 -0.227 -0.267 -1.201 0.911 D 46 44 3 47 3 0 2 60 82 -9.050 -4.228 -0.082 IR 47 47 3 47 3 1 6 64 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 51 - u - - MR 48 47 3 50 3 1 7 62 84 -8.842 -0.027 -5.909 0.468 -0.999 -0.904 0.662 D 49 47 3 50 3 0 2 60 82 -9.050 -2.821 -0.223 IR 50 50 3 50 3 1 6 63 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 50 - a - - MR 51 50 3 53 3 1 6 61 83 -8.896 -0.013 -7.214 0.733 -0.770 -1.091 0.358 D 52 50 3 53 3 0 2 59 81 -8.945 -2.325 -0.325 IR 53 53 3 53 3 1 5 62 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 49 - A - - MR 54 53 3 56 3 1 6 60 82 -8.992 -0.012 -7.310 1.227 -0.859 -1.024 -0.697 D 55 53 3 56 3 0 2 59 81 -8.724 -0.870 -1.150 IR 56 56 3 56 3 1 4 61 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 48 - a - - MR 57 56 3 59 3 1 5 59 81 -9.239 -0.010 -7.557 0.728 -0.607 -0.667 0.081 D 58 56 3 59 3 0 1 58 80 -7.780 -0.543 -1.693 IR 59 59 3 59 3 1 3 60 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 47 - c - - MR 60 59 3 62 5 1 5 58 80 -8.060 -0.020 -7.875 -8.087 -8.979 -0.863 0.940 -0.804 -0.060 D 61 59 3 62 5 0 0 57 79 -5.476 -0.634 -3.102 -4.533 -2.528 IR 62 62 3 62 5 1 2 59 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 3 46 C G - - MP 63 62 3 67 6 2 5 57 79 -9.651 -9.590 -0.014 -8.367 -8.647 -9.042 -4.821 -4.835 -4.603 -1.025 -3.364 -2.496 3.363 -4.136 -4.616 -0.881 -4.958 -2.836 0.603 -4.918 1.252 -3.462 ML 64 62 3 67 6 1 1 56 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 3 67 6 1 1 56 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 3 67 6 0 0 54 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 2 57 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 2 57 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 4 45 C G - - MP 69 68 6 73 6 2 5 55 77 -9.651 -9.590 -0.014 -8.367 -8.647 -9.042 -5.156 -5.129 -4.842 -1.190 -3.462 -5.260 3.562 -4.273 -4.852 -1.023 -5.149 -3.030 0.623 -5.196 0.056 -2.256 ML 70 68 6 73 6 1 1 54 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 54 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 52 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 2 55 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 2 55 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 5 44 g c - - MP 75 74 6 79 4 2 3 53 75 -8.085 -8.292 -0.024 -6.706 -3.318 -2.642 -1.525 1.095 -3.583 -4.061 1.551 -3.735 -2.382 2.849 -3.968 -0.494 0.304 -3.338 -1.281 -2.388 ML 76 74 6 79 4 1 1 53 75 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 4 1 1 53 75 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 78 74 6 79 4 0 0 52 74 -4.568 -4.250 -2.265 -0.520 IL 79 79 5 79 4 1 1 55 76 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 80 80 6 80 3 1 1 54 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 6 - u - - - ML 81 80 6 83 5 1 3 51 73 -8.073 -0.020 -7.888 -8.100 -8.992 0.512 -1.047 -1.583 0.812 D 82 80 6 83 5 0 0 50 71 -4.959 -0.803 -4.221 -2.596 -2.508 IL 83 83 3 83 5 1 1 52 73 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 7 43 G C - - MP 84 83 3 88 6 2 3 50 72 -9.651 -9.590 -0.014 -8.367 -8.647 -9.042 -6.714 -4.084 -7.355 -1.237 -7.892 -5.430 -2.772 -7.499 -5.436 3.891 -5.680 -1.908 -3.133 -5.694 -4.976 -6.206 ML 85 83 3 88 6 1 1 49 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 3 88 6 1 1 49 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 3 88 6 0 0 47 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 50 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 50 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 8 42 A U - - MP 90 89 6 94 4 2 2 48 70 -8.085 -8.292 -0.024 -6.706 -5.810 -4.537 -5.379 3.880 -7.041 -8.364 -2.651 -5.303 -5.568 -1.130 -6.190 -1.820 -3.003 -7.089 -4.560 -4.342 ML 91 89 6 94 4 1 1 48 70 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 4 1 1 48 69 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 93 89 6 94 4 0 0 47 68 -4.568 -4.250 -2.265 -0.520 IL 94 94 5 94 4 1 1 50 71 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 95 95 6 95 3 1 1 49 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 9 - A - - - ML 96 95 6 98 3 1 1 46 68 -9.384 -0.009 -7.701 1.899 -3.918 -2.976 -3.679 D 97 95 6 98 3 0 0 45 66 -5.620 -0.734 -1.403 IL 98 98 3 98 3 1 1 47 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 41 - A - - MR 99 98 3 101 5 1 1 45 67 -8.073 -0.020 -7.888 -8.100 -8.992 1.937 -4.419 -3.890 -4.135 D 100 98 3 101 5 0 0 44 65 -5.352 -0.707 -2.978 -4.409 -2.404 IR 101 101 3 101 5 1 1 45 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 10 40 C G - - MP 102 101 3 106 6 2 2 44 66 -9.651 -9.590 -0.014 -8.367 -8.647 -9.042 -6.487 -6.509 -5.958 -2.639 -4.501 -6.192 3.871 -5.547 -6.163 -2.485 -6.141 -4.499 -1.169 -3.212 -1.983 -4.970 ML 103 101 3 106 6 1 1 43 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 3 106 6 1 1 42 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 3 106 6 0 0 40 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 44 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 43 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 11 39 c g - - MP 108 107 6 112 6 2 2 42 64 -9.651 -9.590 -0.014 -8.367 -8.647 -9.042 -3.651 -3.613 -3.707 0.107 -2.940 -4.487 2.783 -3.535 -3.680 0.260 -4.187 -1.597 2.227 -1.742 -0.618 -2.017 ML 109 107 6 112 6 1 1 41 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 40 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 38 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 42 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 41 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 12 38 G C - - MP 114 113 6 118 6 2 2 40 62 -9.651 -9.590 -0.014 -8.367 -8.647 -9.042 -5.748 -3.745 -5.917 0.201 -6.989 -5.350 -1.982 -6.329 -5.137 3.761 -5.430 -1.008 -2.248 -5.242 -4.068 -4.787 ML 115 113 6 118 6 1 1 39 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 38 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 36 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 40 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 39 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 13 37 c g - - MP 120 119 6 124 6 2 2 38 60 -9.651 -9.590 -0.014 -8.367 -8.647 -9.042 -2.904 -2.960 -3.039 1.049 -2.615 -3.872 1.887 -3.106 -3.052 0.691 -3.598 -1.188 1.448 -3.193 1.885 -0.489 ML 121 119 6 124 6 1 1 37 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 36 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 34 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 38 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 37 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 14 36 G U - - MP 126 125 6 130 6 2 2 36 58 -9.651 -9.590 -0.014 -8.367 -8.647 -9.042 -4.857 -3.481 -5.079 0.309 -6.776 -7.530 -2.244 -5.073 -4.604 -0.201 -5.203 3.692 -2.393 -6.231 -4.136 -2.121 ML 127 125 6 130 6 1 1 35 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 34 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 32 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 36 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 35 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 15 35 a u - - MP 132 131 6 136 6 2 2 34 56 -9.651 -9.590 -0.014 -8.367 -8.647 -9.042 -4.569 -3.239 -4.577 2.801 -5.755 -5.639 -1.036 -4.919 -4.524 2.793 -4.989 -0.727 -1.268 -4.822 -3.009 -3.388 ML 133 131 6 136 6 1 1 33 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 32 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 30 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 34 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 33 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 16 34 G C - - MP 138 137 6 142 6 2 2 32 54 -9.651 -9.590 -0.014 -8.367 -8.647 -9.042 -6.714 -4.084 -7.355 -1.237 -7.892 -5.430 -2.772 -7.499 -5.436 3.891 -5.680 -1.908 -3.133 -5.694 -4.976 -6.206 ML 139 137 6 142 6 1 1 30 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 30 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 28 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 32 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 31 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 17 33 G C - - MP 144 143 6 148 4 2 2 30 52 -1.936 -8.292 -0.691 -3.110 -5.465 -3.615 -5.553 0.134 -6.666 -5.295 -1.697 -6.008 -5.024 3.692 -5.327 0.038 -1.956 -5.060 -3.757 -4.432 ML 145 143 6 148 4 1 1 28 49 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 4 1 1 27 48 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 147 143 6 148 4 0 0 26 48 -4.568 -4.250 -2.265 -0.520 IL 148 148 5 148 4 1 1 30 51 -1.239 -4.828 -0.903 -7.314 0.000 0.000 0.000 0.000 IR 149 149 6 149 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 23 - A - - - ML 150 149 6 152 3 1 1 23 41 -8.888 -0.011 -7.542 1.410 -1.843 -1.949 -0.314 D 151 149 6 152 3 0 0 22 40 -7.762 -0.376 -2.153 IL 152 152 3 152 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 24 - A - - - ML 153 152 3 155 3 1 1 21 40 -9.044 -0.010 -7.698 1.598 -1.422 -1.989 -1.523 D 154 152 3 155 3 0 0 21 40 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 25 - a - - - ML 156 155 3 158 3 1 1 20 39 -9.044 -0.010 -7.698 0.825 -0.060 -1.381 -0.176 D 157 155 3 158 3 0 0 20 39 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 26 - u - - - ML 159 158 3 161 3 1 1 19 38 -9.044 -0.033 -5.592 -0.040 0.180 -0.606 0.308 D 160 158 3 161 3 0 0 19 37 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 27 - G - - - ML 162 161 3 164 3 1 1 18 37 -9.021 -0.147 -3.394 -0.483 -1.694 1.428 -1.811 D 163 161 3 164 3 0 0 17 36 -6.565 -1.077 -0.957 IL 164 164 3 164 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 28 - U - - - ML 165 164 3 167 3 1 1 17 35 -8.910 -0.157 -3.310 -1.360 -1.186 -1.041 1.425 D 166 164 3 167 3 0 0 16 34 -7.626 -3.139 -0.182 IL 167 167 3 167 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 29 - C - - - ML 168 167 3 170 3 1 1 16 34 -8.765 -0.012 -7.419 -2.600 1.771 -2.617 -1.950 D 169 167 3 170 3 0 0 14 33 -8.324 -3.837 -0.110 IL 170 170 3 170 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 30 - U - - - ML 171 170 3 173 3 1 1 14 33 -8.765 -0.012 -7.419 -1.896 -1.903 -2.075 1.690 D 172 170 3 173 3 0 0 13 32 -8.324 -0.244 -2.715 IL 173 173 3 173 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 31 - C - - - ML 174 173 3 176 3 1 1 12 31 -9.044 -0.010 -7.698 -4.074 1.922 -4.749 -3.149 D 175 173 3 176 3 0 0 13 32 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 32 - C - - - ML 177 176 3 179 2 1 1 1 1 * 0.000 -4.074 1.922 -4.749 -3.149 D 178 176 3 179 2 0 0 0 0 * 0.000 IL 179 179 3 179 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 47 ] - - - - - - E 180 179 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME L20-Deltaproteobacteria ACC RF03126 DESC L20-Deltaproteobacteria ribosomal protein leader LENG 59 MAXL 319 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Jul 5 04:55:24 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03126/CM NSEQ 117 EFFN 9.715485 CKSUM 3704912155 STATS LOCAL MSV -7.6044 0.71915 STATS LOCAL VITERBI -8.5391 0.71915 STATS LOCAL FORWARD -3.9162 0.71915 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.37276 1.34269 1.25422 1.60867 1.38629 1.38629 1.38629 1.38629 0.01485 4.91061 4.91061 1.46634 0.26236 0.00000 * 1 1.44131 2.14341 0.74889 1.75309 1 g - - : 1.38629 1.38629 1.38629 1.38629 0.01485 4.91061 4.91061 1.46634 0.26236 1.09861 0.40547 2 1.44983 1.44854 1.40979 1.25077 2 u - - : 1.38629 1.38629 1.38629 1.38629 0.01485 4.91061 4.91061 1.46634 0.26236 1.09861 0.40547 3 3.89253 0.32880 3.72099 1.44559 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.01485 4.91061 4.91061 1.46634 0.26236 1.09861 0.40547 4 3.89102 0.22085 3.70663 1.87614 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.01485 4.91061 4.91061 1.46634 0.26236 1.09861 0.40547 5 1.82250 1.62211 0.59339 2.42534 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.01485 4.91061 4.91061 1.46634 0.26236 1.09861 0.40547 6 0.99299 2.27093 2.73345 0.77366 6 u - - - 1.38629 1.38629 1.38629 1.38629 0.01485 4.91061 4.91061 1.46634 0.26236 1.09861 0.40547 7 3.80933 4.87883 0.03808 4.88020 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.01485 4.91061 4.91061 1.46634 0.26236 1.09861 0.40547 8 0.04366 4.95781 3.60454 4.76865 8 A - - < 1.38629 1.38629 1.38629 1.38629 0.01485 4.91061 4.91061 1.46634 0.26236 1.09861 0.40547 9 0.04674 4.58578 3.74146 4.44419 9 A - - - 1.38629 1.38629 1.38629 1.38629 0.01485 4.91061 4.91061 1.46634 0.26236 1.09861 0.40547 10 4.87482 0.05748 4.75949 3.22755 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.01485 4.91061 4.91061 1.46634 0.26236 1.09861 0.40547 11 2.88736 0.71508 2.64377 0.95703 11 c - - < 1.38629 1.38629 1.38629 1.38629 0.01485 4.91061 4.91061 1.46634 0.26236 1.09861 0.40547 12 2.66509 4.41787 0.09999 4.30471 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.01485 4.91061 4.91061 1.46634 0.26236 1.09861 0.40547 13 1.94234 1.42447 2.16319 0.69107 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.01485 4.91061 4.91061 1.46634 0.26236 1.09861 0.40547 14 2.73464 4.54848 0.10609 3.68263 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.01485 4.91061 4.91061 1.46634 0.26236 1.09861 0.40547 15 0.69827 3.88436 0.78484 3.65738 15 a - - < 1.38629 1.38629 1.38629 1.38629 0.01485 4.91061 4.91061 1.46634 0.26236 1.09861 0.40547 16 3.78416 4.83440 0.03953 4.81803 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.01485 4.91061 4.91061 1.46634 0.26236 1.09861 0.40547 17 2.77310 4.22743 0.09842 4.09393 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.51403 1.26824 2.11531 0.61739 0.77512 1.09861 0.40547 18 0.33734 3.02812 3.12786 1.63929 23 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01676 4.79044 4.79044 1.46634 0.26236 0.11529 2.21744 19 0.22428 2.45246 3.04006 2.70315 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01485 4.91061 4.91061 1.46634 0.26236 1.09861 0.40547 20 0.76352 1.39212 2.52837 1.58163 25 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01485 4.91061 4.91061 1.46634 0.26236 1.09861 0.40547 21 1.45281 1.21456 1.81936 1.18053 26 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03278 4.91061 3.69367 1.46634 0.26236 1.09861 0.40547 22 1.79898 2.65414 0.33693 2.99147 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.12085 4.89294 2.24116 1.46634 0.26236 0.46516 0.98895 23 2.73001 2.39331 2.14552 0.31959 28 U - - _ 1.38629 1.38629 1.38629 1.38629 0.12935 4.80846 2.17881 1.46634 0.26236 2.78374 0.06380 24 3.76126 0.10054 3.35371 3.28500 29 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01840 4.69751 4.69751 1.46634 0.26236 3.36896 0.03503 25 3.11677 3.06542 2.99559 0.15192 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01840 4.69751 4.69751 1.46634 0.26236 0.07134 2.67581 26 4.72418 0.03222 5.10726 4.08777 31 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01485 4.91061 4.91061 1.46634 0.26236 1.09861 0.40547 27 4.72418 0.03222 5.10726 4.08777 32 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01485 4.91061 4.91061 1.46634 0.26236 1.09861 0.40547 28 4.27057 0.16897 4.06437 2.08489 33 C - - > 1.38629 1.38629 1.38629 1.38629 0.01485 4.91061 4.91061 1.46634 0.26236 1.09861 0.40547 29 4.87980 0.04915 4.73133 3.45630 34 C - - > 1.38629 1.38629 1.38629 1.38629 0.01485 4.91061 4.91061 1.46634 0.26236 1.09861 0.40547 30 3.87598 0.83713 3.67746 0.65195 35 U - - > 1.38629 1.38629 1.38629 1.38629 0.01485 4.91061 4.91061 1.46634 0.26236 1.09861 0.40547 31 4.36801 3.18045 4.31033 0.07007 36 U - - > 1.38629 1.38629 1.38629 1.38629 0.01485 4.91061 4.91061 1.46634 0.26236 1.09861 0.40547 32 1.71212 2.31944 0.65766 1.59394 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.01485 4.91061 4.91061 1.46634 0.26236 1.09861 0.40547 33 4.47234 0.12510 4.27143 2.38372 38 C - - > 1.38629 1.38629 1.38629 1.38629 0.01485 4.91061 4.91061 1.46634 0.26236 1.09861 0.40547 34 1.10640 2.54112 0.66701 2.56091 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.01485 4.91061 4.91061 1.46634 0.26236 1.09861 0.40547 35 3.86724 4.22746 0.04562 4.70067 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.01485 4.91061 4.91061 1.46634 0.26236 1.09861 0.40547 36 0.02473 5.02238 4.63383 4.81366 41 A - - - 1.38629 1.38629 1.38629 1.38629 0.01485 4.91061 4.91061 1.46634 0.26236 1.09861 0.40547 37 4.96021 4.02588 4.75896 0.03401 42 U - - > 1.38629 1.38629 1.38629 1.38629 0.01485 4.91061 4.91061 1.46634 0.26236 1.09861 0.40547 38 4.89902 0.04878 4.74234 3.45972 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.01485 4.91061 4.91061 1.46634 0.26236 1.09861 0.40547 39 2.55842 0.66485 1.45108 1.74924 44 C - - > 1.38629 1.38629 1.38629 1.38629 0.01485 4.91061 4.91061 1.46634 0.26236 1.09861 0.40547 40 2.48851 3.87345 0.14997 3.33982 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.01485 4.91061 4.91061 1.46634 0.26236 1.09861 0.40547 41 2.57625 3.45901 0.14259 3.67428 46 G - - > 1.38629 1.38629 1.38629 1.38629 0.02578 4.91061 4.01298 1.46634 0.26236 1.09861 0.40547 42 2.20679 0.64370 1.96065 1.49685 47 C - - : 1.38629 1.38629 1.38629 1.38629 0.11097 4.89984 2.32703 1.46634 0.26236 1.49375 0.25428 43 0.83946 1.84677 1.88717 1.35165 48 a - - : 1.38629 1.38629 1.38629 1.38629 0.21677 4.80538 1.67824 1.46634 0.26236 2.80677 0.06230 44 0.45654 2.04202 2.22155 2.05323 49 A - - : 1.38629 1.38629 1.38629 1.38629 0.10012 4.60874 2.46145 1.46634 0.26236 3.64714 0.02641 45 0.82213 2.01432 2.26933 1.12790 50 a - - : 1.38629 1.38629 1.38629 1.38629 0.07878 4.53040 2.73363 1.46634 0.26236 3.12382 0.04499 46 1.02705 2.24310 2.09504 0.88493 51 u - - : 1.38629 1.38629 1.38629 1.38629 0.02278 4.48623 4.48623 1.46634 0.26236 3.91075 0.02023 47 1.59650 1.57842 2.33513 0.70462 52 u - - : 1.38629 1.38629 1.38629 1.38629 0.02278 4.48623 4.48623 1.46634 0.26236 3.91075 0.02023 48 0.51971 1.85837 2.60239 1.74134 53 A - - : 1.38629 1.38629 1.38629 1.38629 0.02278 4.48623 4.48623 1.46634 0.26236 3.91075 0.02023 49 0.66037 1.34247 2.61260 1.90519 54 A - - : 1.38629 1.38629 1.38629 1.38629 0.05369 4.48623 3.19392 1.46634 0.26236 3.91075 0.02023 50 1.07164 1.20423 1.96714 1.52430 55 a - - : 1.38629 1.38629 1.38629 1.38629 0.02349 4.45603 4.45603 1.46634 0.26236 3.96229 0.01920 51 1.06950 1.26030 1.93862 1.47252 56 a - - : 1.38629 1.38629 1.38629 1.38629 0.02349 4.45603 4.45603 1.46634 0.26236 3.96229 0.01920 52 0.89648 1.77620 2.16416 1.17808 57 a - - : 1.38629 1.38629 1.38629 1.38629 0.02349 4.45603 4.45603 1.46634 0.26236 3.96229 0.01920 53 0.64107 1.97479 1.80932 1.76775 58 A - - : 1.38629 1.38629 1.38629 1.38629 0.07823 4.45603 2.75457 1.46634 0.26236 0.03878 3.26914 54 0.86146 1.64095 1.79332 1.52669 59 a - - : 1.38629 1.38629 1.38629 1.38629 1.14070 0.39633 4.87703 2.83832 0.06031 0.31103 1.31934 55 0.02473 5.02238 4.63383 4.81366 122 A - - : 1.38629 1.38629 1.38629 1.38629 0.01485 4.91061 4.91061 1.46634 0.26236 1.09861 0.40547 56 4.32159 5.38308 0.02620 4.82958 123 G - - : 1.38629 1.38629 1.38629 1.38629 0.01485 4.91061 4.91061 1.46634 0.26236 1.09861 0.40547 57 4.32159 5.38308 0.02620 4.82958 124 G - - : 1.38629 1.38629 1.38629 1.38629 0.01485 4.91061 4.91061 1.46634 0.26236 1.09861 0.40547 58 0.02473 5.02238 4.63383 4.81366 125 A - - : 1.38629 1.38629 1.38629 1.38629 0.01485 4.91061 4.91061 1.46634 0.26236 1.09861 0.40547 59 4.32159 5.38308 0.02620 4.82958 126 G - - : 1.38629 1.38629 1.38629 1.38629 0.00745 4.90321 * 1.46634 0.26236 0.00000 * //