INFERNAL1/a [1.1.4 | Dec 2020] NAME RAGATH-31 ACC RF03101 DESC RAGATH-31 RNA STATES 166 NODES 37 CLEN 54 W 70 ALPH RNA RF no CONS yes MAP yes DATE Mon Oct 1 23:06:48 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmcalibrate --cpu 8 CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 26 EFFN 2.294678 CKSUM 326732624 NULL 0.000 0.000 0.000 0.000 GA 71.80 TC 71.80 NC 37.20 EFP7GF -11.4932 0.71945 ECMLC 0.60433 -6.19548 3.68616 1600000 470649 0.002550 ECMGC 0.39851 -17.83719 -2.37014 1600000 190082 0.002104 ECMLI 0.61166 -4.45115 4.91186 1600000 368464 0.003257 ECMGI 0.42774 -12.95572 0.35964 1600000 119019 0.003361 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 70 90 -9.163 -9.103 -0.020 -7.879 -8.159 -8.554 IL 1 1 2 1 6 1 6 72 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 6 72 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 56 G C - - MP 3 2 3 7 6 2 10 70 90 -9.163 -9.103 -0.020 -7.879 -8.159 -8.554 -5.005 -3.220 -5.133 0.022 -5.602 -4.795 -0.901 -5.391 -4.495 3.695 -4.814 -0.931 -1.280 -4.639 -2.953 -4.006 ML 4 2 3 7 6 1 4 69 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 4 69 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 0 66 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 5 70 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 5 70 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 55 G C - - MP 9 8 6 13 6 2 8 68 88 -9.163 -9.103 -0.020 -7.879 -8.159 -8.554 -4.727 -3.073 -4.818 0.248 -5.506 -4.740 -0.785 -5.165 -4.368 3.627 -4.706 -0.359 -1.089 -4.454 -2.822 -3.701 ML 10 8 6 13 6 1 4 67 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 3 67 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 0 64 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 5 68 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 5 68 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 54 A U - - MP 15 14 6 19 6 2 7 66 86 -9.163 -9.103 -0.020 -7.879 -8.159 -8.554 -4.036 -3.007 -4.035 3.469 -4.498 -5.586 -0.181 -4.060 -3.918 0.814 -4.478 -0.445 -0.598 -4.731 -2.121 -2.855 ML 16 14 6 19 6 1 3 65 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 2 65 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 63 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 4 66 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 4 66 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 53 G C - - MP 21 20 6 25 4 2 5 64 84 -7.090 -2.662 -0.294 -5.711 -5.005 -3.220 -5.133 0.022 -5.602 -4.795 -0.901 -5.391 -4.495 3.695 -4.814 -0.931 -1.280 -4.639 -2.953 -4.006 ML 22 20 6 25 4 1 2 64 83 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 4 1 1 63 83 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 24 20 6 25 4 0 0 62 82 -4.568 -4.250 -2.265 -0.520 IL 25 25 5 25 4 1 4 65 84 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 26 26 6 26 3 1 4 64 83 -1.886 -0.540 -4.586 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - G - - - ML 27 26 6 29 3 1 4 62 81 -8.097 -0.019 -6.751 -1.862 -3.124 1.780 -2.512 D 28 26 6 29 3 0 0 60 80 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 3 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 30 29 3 32 3 1 3 61 80 -8.479 -0.017 -6.797 1.771 -2.641 -2.246 -2.210 D 31 29 3 32 3 0 0 59 79 -5.620 -0.734 -1.403 IL 32 32 3 32 3 1 2 61 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 51 - a - - MR 33 32 3 35 3 1 3 60 79 -8.479 -0.017 -6.797 0.625 -0.021 -1.078 -0.003 D 34 32 3 35 3 0 0 58 78 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 1 60 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 50 - G - - MR 36 35 3 38 5 1 2 59 78 -7.210 -0.036 -7.025 -7.237 -8.129 -0.458 -2.110 1.430 -1.528 D 37 35 3 38 5 0 0 57 77 -5.352 -0.707 -2.978 -4.409 -2.404 IR 38 38 3 38 5 1 1 59 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 49 C G - - MP 39 38 3 43 6 2 4 58 77 -9.163 -9.103 -0.020 -7.879 -8.159 -8.554 -4.842 -4.773 -4.482 -0.981 -3.138 -4.855 3.632 -3.978 -4.542 -0.779 -4.770 -2.725 0.344 -4.891 -0.853 -3.372 ML 40 38 3 43 6 1 1 56 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 3 43 6 1 1 56 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 3 43 6 0 0 54 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 1 57 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 1 57 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 48 G C - - MP 45 44 6 49 6 2 3 56 75 -9.163 -9.103 -0.020 -7.879 -8.159 -8.554 -5.005 -3.220 -5.133 0.022 -5.602 -4.795 -0.901 -5.391 -4.495 3.695 -4.814 -0.931 -1.280 -4.639 -2.953 -4.006 ML 46 44 6 49 6 1 1 54 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 1 54 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 52 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 1 55 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 1 55 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 47 u a - - MP 51 50 6 55 6 2 3 54 73 -9.163 -9.103 -0.020 -7.879 -8.159 -8.554 -3.604 -3.588 -3.525 0.063 -2.562 -4.130 1.735 -3.248 -3.544 0.264 -3.955 -1.650 2.701 -3.774 1.388 -2.450 ML 52 50 6 55 6 1 1 52 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 1 52 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 53 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 1 53 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 10 46 G C - - MP 57 56 6 61 6 2 3 52 71 -9.163 -9.103 -0.020 -7.879 -8.159 -8.554 -3.900 -2.658 -3.901 1.500 -4.555 -4.502 0.018 -4.280 -3.884 3.224 -4.281 -0.051 -0.267 -3.876 -1.965 -2.807 ML 58 56 6 61 6 1 1 50 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 50 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 51 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 51 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 11 45 g c - - MP 63 62 6 67 6 2 2 50 69 -9.163 -9.103 -0.020 -7.879 -8.159 -8.554 -3.118 -1.336 -3.184 2.249 -3.612 -4.075 0.498 -3.529 -3.249 2.270 -3.721 1.050 0.255 -3.318 -1.332 -2.173 ML 64 62 6 67 6 1 1 48 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 48 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 49 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 49 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 12 44 G C - - MP 69 68 6 73 6 2 2 48 67 -9.163 -9.103 -0.020 -7.879 -8.159 -8.554 -5.005 -3.220 -5.133 0.022 -5.602 -4.795 -0.901 -5.391 -4.495 3.695 -4.814 -0.931 -1.280 -4.639 -2.953 -4.006 ML 70 68 6 73 6 1 1 46 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 46 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 47 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 47 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 13 43 G C - - MP 75 74 6 79 6 2 2 46 65 -9.163 -9.103 -0.020 -7.879 -8.159 -8.554 -5.005 -3.220 -5.133 0.022 -5.602 -4.795 -0.901 -5.391 -4.495 3.695 -4.814 -0.931 -1.280 -4.639 -2.953 -4.006 ML 76 74 6 79 6 1 1 44 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 44 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 42 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 45 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 45 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 14 42 A U - - MP 81 80 6 85 4 2 2 44 63 -4.130 -7.297 -0.124 -5.711 -3.537 -2.548 -3.638 3.026 -4.289 -5.049 -0.044 -3.808 -3.500 1.378 -4.064 1.219 -0.289 -4.125 -1.933 -2.467 ML 82 80 6 85 4 1 1 43 63 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 4 1 1 43 62 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 84 80 6 85 4 0 0 42 61 -4.568 -4.250 -2.265 -0.520 IL 85 85 5 85 4 1 1 44 64 -1.997 -2.680 -0.822 -5.165 0.000 0.000 0.000 0.000 IR 86 86 6 86 3 1 1 44 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 16 - u - - - ML 87 86 6 89 3 1 1 41 60 -8.097 -0.019 -6.751 0.474 -0.848 -0.875 0.595 D 88 86 6 89 3 0 0 39 59 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 1 43 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 17 - c - - - ML 90 89 3 92 3 1 1 40 59 -8.097 -0.019 -6.751 -0.162 0.838 -1.401 -0.089 D 91 89 3 92 3 0 0 38 58 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 1 42 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 18 - A - - - ML 93 92 3 95 3 1 1 38 58 -8.097 -0.019 -6.751 1.124 -0.720 -1.199 -0.361 D 94 92 3 95 3 0 0 37 56 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 19 - A - - - ML 96 95 3 98 5 1 1 37 57 -7.210 -0.036 -7.025 -7.237 -8.129 1.771 -2.641 -2.246 -2.210 D 97 95 3 98 5 0 0 36 55 -4.959 -0.803 -4.221 -2.596 -2.508 IL 98 98 3 98 5 1 1 38 57 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 20 41 G C - - MP 99 98 3 103 6 2 2 36 56 -9.163 -9.103 -0.020 -7.879 -8.159 -8.554 -4.179 -2.839 -4.170 0.561 -4.678 -4.369 -0.120 -4.620 -4.107 3.481 -4.426 -0.585 -0.435 -2.278 -2.103 -3.150 ML 100 98 3 103 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 3 103 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 3 103 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 21 40 G C - - MP 105 104 6 109 6 2 2 34 54 -9.163 -9.103 -0.020 -7.879 -8.159 -8.554 -5.005 -3.220 -5.133 0.022 -5.602 -4.795 -0.901 -5.391 -4.495 3.695 -4.814 -0.931 -1.280 -4.639 -2.953 -4.006 ML 106 104 6 109 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 22 39 G C - - MP 111 110 6 115 6 2 2 32 52 -9.163 -9.103 -0.020 -7.879 -8.159 -8.554 -4.186 -2.801 -4.214 0.659 -4.943 -4.617 -0.319 -4.591 -4.063 3.375 -4.442 0.797 -0.601 -4.102 -2.312 -3.108 ML 112 110 6 115 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 23 38 c g - - MP 117 116 6 121 4 2 2 30 49 -7.090 -7.297 -0.267 -2.689 -3.707 -3.696 -3.593 -0.001 -2.547 -4.162 2.698 -3.260 -3.609 0.192 -4.001 -1.743 1.453 -3.856 1.755 -2.499 ML 118 116 6 121 4 1 1 31 50 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 4 1 1 31 50 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 120 116 6 121 4 0 0 30 49 -4.568 -4.250 -2.265 -0.520 IL 121 121 5 121 4 1 1 33 52 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 122 122 6 122 3 1 1 31 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 24 - U - - - ML 123 122 6 125 5 1 1 28 47 -7.038 -0.041 -6.854 -7.066 -7.957 -1.369 -1.386 -2.097 1.583 D 124 122 6 125 5 0 0 27 46 -5.746 -0.410 -5.007 -3.382 -3.295 IL 125 125 3 125 5 1 1 28 47 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 25 37 G C - - MP 126 125 3 130 6 2 2 27 46 -9.163 -9.103 -0.020 -7.879 -8.159 -8.554 -3.694 -2.732 -3.659 0.830 -3.682 -4.247 0.792 -3.882 -3.735 3.045 -4.122 -0.449 1.131 -3.648 -1.218 -2.590 ML 127 125 3 130 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 3 130 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 3 130 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 26 36 G C - - MP 132 131 6 136 6 2 2 25 44 -9.163 -9.103 -0.020 -7.879 -8.159 -8.554 -5.005 -3.220 -5.133 0.022 -5.602 -4.795 -0.901 -5.391 -4.495 3.695 -4.814 -0.931 -1.280 -4.639 -2.953 -4.006 ML 133 131 6 136 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 27 35 u g - - MP 138 137 6 142 4 2 2 23 42 -7.090 -7.297 -0.048 -5.711 -3.739 -3.668 -3.603 -0.084 -2.608 -4.163 1.638 -3.302 -3.635 0.106 -4.010 -1.712 0.900 -3.904 2.901 -1.124 ML 139 137 6 142 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 141 137 6 142 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520 IL 142 142 5 142 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 143 143 6 143 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 28 - A - - - ML 144 143 6 146 3 1 1 20 39 -8.097 -0.019 -6.751 1.771 -2.641 -2.246 -2.210 D 145 143 6 146 3 0 0 19 38 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 29 - C - - - ML 147 146 3 149 3 1 1 19 37 -8.097 -0.019 -6.751 -2.067 1.701 -2.898 -1.415 D 148 146 3 149 3 0 0 18 37 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 30 - A - - - ML 150 149 3 152 3 1 1 17 36 -8.097 -0.019 -6.751 1.771 -2.641 -2.246 -2.210 D 151 149 3 152 3 0 0 17 36 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 31 - C - - - ML 153 152 3 155 3 1 1 16 35 -8.097 -0.019 -6.751 -2.067 1.701 -2.898 -1.415 D 154 152 3 155 3 0 0 16 34 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 32 - G - - - ML 156 155 3 158 3 1 1 15 33 -8.097 -0.019 -6.751 -1.862 -3.124 1.780 -2.512 D 157 155 3 158 3 0 0 15 33 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 33 - U - - - ML 159 158 3 161 3 1 1 13 31 -8.097 -0.019 -6.751 -1.735 -1.688 -2.480 1.683 D 160 158 3 161 3 0 0 13 32 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 34 - C - - - ML 162 161 3 164 2 1 1 1 1 * 0.000 -2.067 1.701 -2.898 -1.415 D 163 161 3 164 2 0 0 0 0 * 0.000 IL 164 164 3 164 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 36 ] - - - - - - E 165 164 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME RAGATH-31 ACC RF03101 DESC RAGATH-31 RNA LENG 54 MAXL 131 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Oct 1 23:06:48 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED NSEQ 26 EFFN 3.488037 CKSUM 326732624 STATS LOCAL MSV -7.6013 0.71945 STATS LOCAL VITERBI -8.3157 0.71945 STATS LOCAL FORWARD -3.6300 0.71945 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.65743 1.18943 1.12319 1.71625 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 0.00000 * 1 2.92785 3.75204 0.10714 3.70443 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 2 2.72442 3.59550 0.13194 3.48761 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 3 0.18908 3.39861 2.28176 3.30342 3 A - - < 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 4 2.90715 3.72271 0.11028 3.66433 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 5 3.17851 4.11315 0.08689 3.68004 5 G - - - 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 6 0.09262 3.72169 3.40158 3.47540 6 A - - - 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 7 3.71018 0.14421 3.53969 2.51574 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 8 2.90388 3.71809 0.11079 3.65806 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 9 2.82882 1.66780 2.62062 0.38640 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 10 1.61350 2.87507 0.38691 2.72955 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 11 0.97108 2.53839 0.80229 2.36412 11 g - - < 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 12 2.90069 3.71360 0.11128 3.65196 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 13 2.90002 3.71267 0.11139 3.65070 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 14 0.47912 3.19230 1.24430 2.96716 14 A - - < 1.38629 1.38629 1.38629 1.38629 0.09060 2.64836 4.14474 0.40008 1.10947 1.09861 0.40547 15 1.02555 2.09206 2.07033 0.93694 16 u - - - 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 16 1.57085 0.69345 2.57272 1.53269 17 c - - - 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 17 0.52266 1.94071 2.40886 1.75136 18 A - - - 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 18 0.09262 3.72169 3.40158 3.47540 19 A - - - 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 19 2.47821 3.12871 0.20869 2.80198 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 20 2.90514 3.71987 0.11060 3.66047 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 21 2.36984 3.19525 0.20051 3.05254 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 22 2.83325 0.80565 2.62230 0.86336 23 c - - < 1.38629 1.38629 1.38629 1.38629 0.20051 4.14474 1.79672 1.46634 0.26236 1.09861 0.40547 23 2.76045 2.69905 3.28349 0.18396 24 U - - - 1.38629 1.38629 1.38629 1.38629 0.03800 3.98222 3.98222 1.46634 0.26236 0.17489 1.82977 24 2.16274 2.36830 0.47785 1.76473 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 25 2.89281 3.70253 0.11251 3.63699 26 G - - < 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 26 3.05181 1.79466 2.86739 0.31513 27 U - - < 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 27 0.09262 3.72169 3.40158 3.47540 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 28 3.42438 0.11456 3.98554 2.86308 29 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 29 0.09262 3.72169 3.40158 3.47540 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 30 3.42438 0.11456 3.98554 2.86308 31 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 31 3.17851 4.11315 0.08689 3.68004 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 32 3.07156 2.95957 3.60368 0.13400 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 33 3.42438 0.11456 3.98554 2.86308 34 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 34 2.30148 3.04414 0.26603 2.45532 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 35 3.73647 0.13896 3.51596 2.57462 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 36 1.88506 0.53743 2.18529 1.88724 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 37 1.74799 2.78675 0.37126 2.59839 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 38 3.27226 0.34936 3.01095 1.57167 39 C - - > 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 39 3.82258 0.13384 3.55880 2.59123 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 40 3.24017 0.22743 2.94783 2.19097 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 41 3.16957 2.07878 2.98115 0.24569 42 U - - > 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 42 3.82294 0.13382 3.55898 2.59129 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 43 3.82564 0.13367 3.56029 2.59180 44 C - - > 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 44 2.60151 1.12089 2.34052 0.68603 45 U - - > 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 45 2.97113 0.46101 2.68808 1.38590 46 C - - > 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 46 0.72155 2.78791 0.97287 2.59755 47 a - - > 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 47 3.84850 0.13239 3.57133 2.59600 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 48 2.80564 3.71789 0.12246 3.48988 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 49 1.83987 3.18761 0.30171 2.80780 50 G - - - 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 50 0.90736 1.35841 2.26740 1.44493 51 a - - - 1.38629 1.38629 1.38629 1.38629 0.22189 1.69746 4.14474 0.16489 1.88379 1.09861 0.40547 51 3.84782 0.13243 3.57101 2.59588 53 C - - > 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 52 3.53191 2.63314 3.20634 0.15269 54 U - - > 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 53 3.69759 0.17634 3.43239 2.25789 55 C - - > 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 54 3.90989 0.12911 3.60034 2.60692 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.01623 4.12876 * 1.46634 0.26236 0.00000 * //