INFERNAL1/a [1.1.5 | Sep 2023] NAME RAGATH-31 ACC RF03101 DESC RAGATH-31 RNA STATES 166 NODES 37 CLEN 54 W 70 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 9 06:06:56 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03101/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 26 EFFN 2.294678 CKSUM 326732624 NULL 0.000 0.000 0.000 0.000 GA 71.80 TC 73.50 NC 71.60 EFP7GF -11.4908 0.71945 ECMLC 0.60162 -6.24104 3.68404 1600000 470343 0.002551 ECMGC 0.39555 -17.98025 -2.39120 1600000 190562 0.002099 ECMLI 0.61156 -4.45351 4.91091 1600000 368436 0.003257 ECMGI 0.42790 -12.96339 0.35159 1600000 119252 0.003354 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 70 90 -9.163 -9.103 -0.020 -7.879 -8.159 -8.554 IL 1 1 2 1 6 1 6 72 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 6 72 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 56 G C - - MP 3 2 3 7 6 2 10 70 90 -9.163 -9.103 -0.020 -7.879 -8.159 -8.554 -5.005 -3.220 -5.133 0.022 -5.602 -4.795 -0.901 -5.391 -4.495 3.695 -4.814 -0.931 -1.280 -4.639 -2.953 -4.006 ML 4 2 3 7 6 1 4 69 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 4 69 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 0 66 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 5 70 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 5 70 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 55 G C - - MP 9 8 6 13 6 2 8 68 88 -9.163 -9.103 -0.020 -7.879 -8.159 -8.554 -4.720 -3.070 -4.810 0.254 -5.499 -4.739 -0.780 -5.158 -4.364 3.625 -4.703 -0.345 -1.083 -4.450 -2.816 -3.694 ML 10 8 6 13 6 1 3 67 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 3 67 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 0 64 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 5 68 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 5 68 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 54 A U - - MP 15 14 6 19 6 2 7 66 86 -9.163 -9.103 -0.020 -7.879 -8.159 -8.554 -4.036 -3.007 -4.035 3.469 -4.498 -5.586 -0.181 -4.060 -3.918 0.814 -4.478 -0.445 -0.598 -4.731 -2.121 -2.855 ML 16 14 6 19 6 1 3 65 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 2 65 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 63 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 4 66 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 4 66 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 53 G C - - MP 21 20 6 25 4 2 5 64 84 -7.090 -2.693 -0.288 -5.711 -5.005 -3.220 -5.133 0.022 -5.602 -4.795 -0.901 -5.391 -4.495 3.695 -4.814 -0.931 -1.280 -4.639 -2.953 -4.006 ML 22 20 6 25 4 1 2 64 83 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 4 1 1 63 83 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 24 20 6 25 4 0 0 62 82 -4.568 -4.250 -2.265 -0.520 IL 25 25 5 25 4 1 4 65 84 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 26 26 6 26 3 1 4 64 83 -1.878 -0.544 -4.578 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - G - - - ML 27 26 6 29 3 1 4 62 81 -8.097 -0.019 -6.751 -1.862 -3.124 1.780 -2.512 D 28 26 6 29 3 0 0 60 80 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 3 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 30 29 3 32 3 1 3 61 80 -8.479 -0.017 -6.797 1.771 -2.641 -2.246 -2.210 D 31 29 3 32 3 0 0 59 79 -5.620 -0.734 -1.403 IL 32 32 3 32 3 1 2 61 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 51 - a - - MR 33 32 3 35 3 1 3 60 79 -8.479 -0.017 -6.797 0.616 -0.003 -1.080 -0.005 D 34 32 3 35 3 0 0 58 78 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 1 60 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 50 - G - - MR 36 35 3 38 5 1 2 59 78 -7.210 -0.036 -7.025 -7.237 -8.129 -0.472 -2.119 1.435 -1.537 D 37 35 3 38 5 0 0 57 77 -5.352 -0.707 -2.978 -4.409 -2.404 IR 38 38 3 38 5 1 1 59 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 49 C G - - MP 39 38 3 43 6 2 4 58 77 -9.163 -9.103 -0.020 -7.879 -8.159 -8.554 -4.842 -4.773 -4.482 -0.981 -3.138 -4.855 3.632 -3.978 -4.542 -0.779 -4.770 -2.725 0.344 -4.891 -0.853 -3.372 ML 40 38 3 43 6 1 1 56 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 3 43 6 1 1 56 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 3 43 6 0 0 54 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 1 57 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 1 57 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 48 G C - - MP 45 44 6 49 6 2 3 56 75 -9.163 -9.103 -0.020 -7.879 -8.159 -8.554 -5.005 -3.220 -5.133 0.022 -5.602 -4.795 -0.901 -5.391 -4.495 3.695 -4.814 -0.931 -1.280 -4.639 -2.953 -4.006 ML 46 44 6 49 6 1 1 54 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 1 54 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 52 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 1 55 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 1 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 47 u a - - MP 51 50 6 55 6 2 3 54 73 -9.163 -9.103 -0.020 -7.879 -8.159 -8.554 -3.599 -3.584 -3.521 0.066 -2.558 -4.125 1.737 -3.244 -3.539 0.267 -3.951 -1.647 2.684 -3.769 1.421 -2.446 ML 52 50 6 55 6 1 1 52 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 1 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 53 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 10 46 G C - - MP 57 56 6 61 6 2 3 52 71 -9.163 -9.103 -0.020 -7.879 -8.159 -8.554 -3.883 -2.650 -3.883 1.523 -4.536 -4.496 0.033 -4.263 -3.873 3.211 -4.271 -0.037 -0.252 -3.864 -1.948 -2.790 ML 58 56 6 61 6 1 1 50 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 51 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 11 45 g c - - MP 63 62 6 67 6 2 2 50 69 -9.163 -9.103 -0.020 -7.879 -8.159 -8.554 -3.114 -1.314 -3.180 2.248 -3.606 -4.070 0.500 -3.525 -3.245 2.266 -3.717 1.052 0.257 -3.314 -1.329 -2.170 ML 64 62 6 67 6 1 1 48 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 48 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 49 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 12 44 G C - - MP 69 68 6 73 6 2 2 48 67 -9.163 -9.103 -0.020 -7.879 -8.159 -8.554 -5.005 -3.220 -5.133 0.022 -5.602 -4.795 -0.901 -5.391 -4.495 3.695 -4.814 -0.931 -1.280 -4.639 -2.953 -4.006 ML 70 68 6 73 6 1 1 46 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 46 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 47 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 13 43 G C - - MP 75 74 6 79 6 2 2 46 65 -9.163 -9.103 -0.020 -7.879 -8.159 -8.554 -5.005 -3.220 -5.133 0.022 -5.602 -4.795 -0.901 -5.391 -4.495 3.695 -4.814 -0.931 -1.280 -4.639 -2.953 -4.006 ML 76 74 6 79 6 1 1 44 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 44 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 42 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 45 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 14 42 A U - - MP 81 80 6 85 4 2 2 44 63 -4.362 -7.297 -0.111 -5.711 -3.532 -2.543 -3.634 3.014 -4.284 -5.041 -0.040 -3.805 -3.495 1.384 -4.059 1.248 -0.285 -4.118 -1.928 -2.463 ML 82 80 6 85 4 1 1 43 63 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 4 1 1 43 62 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 84 80 6 85 4 0 0 42 61 -4.568 -4.250 -2.265 -0.520 IL 85 85 5 85 4 1 1 44 64 -1.948 -2.631 -0.861 -5.117 0.000 0.000 0.000 0.000 IR 86 86 6 86 3 1 1 44 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 16 - u - - - ML 87 86 6 89 3 1 1 41 60 -8.097 -0.019 -6.751 0.492 -0.849 -0.867 0.575 D 88 86 6 89 3 0 0 39 59 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 1 43 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 17 - c - - - ML 90 89 3 92 3 1 1 40 59 -8.097 -0.019 -6.751 -0.159 0.838 -1.401 -0.092 D 91 89 3 92 3 0 0 38 58 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 1 42 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 18 - A - - - ML 93 92 3 95 3 1 1 38 58 -8.097 -0.019 -6.751 1.129 -0.726 -1.202 -0.369 D 94 92 3 95 3 0 0 37 56 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 19 - A - - - ML 96 95 3 98 5 1 1 37 57 -7.210 -0.036 -7.025 -7.237 -8.129 1.771 -2.641 -2.246 -2.210 D 97 95 3 98 5 0 0 36 55 -4.959 -0.803 -4.221 -2.596 -2.508 IL 98 98 3 98 5 1 1 38 57 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 20 41 G C - - MP 99 98 3 103 6 2 2 36 56 -9.163 -9.103 -0.020 -7.879 -8.159 -8.554 -4.169 -2.835 -4.160 0.566 -4.668 -4.365 -0.113 -4.611 -4.101 3.478 -4.421 -0.581 -0.428 -2.247 -2.095 -3.141 ML 100 98 3 103 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 3 103 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 3 103 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 21 40 G C - - MP 105 104 6 109 6 2 2 34 54 -9.163 -9.103 -0.020 -7.879 -8.159 -8.554 -5.005 -3.220 -5.133 0.022 -5.602 -4.795 -0.901 -5.391 -4.495 3.695 -4.814 -0.931 -1.280 -4.639 -2.953 -4.006 ML 106 104 6 109 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 22 39 G C - - MP 111 110 6 115 6 2 2 32 52 -9.163 -9.103 -0.020 -7.879 -8.159 -8.554 -4.198 -2.807 -4.226 0.650 -4.955 -4.618 -0.329 -4.603 -4.071 3.383 -4.448 0.769 -0.611 -4.109 -2.323 -3.120 ML 112 110 6 115 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 23 38 c g - - MP 117 116 6 121 4 2 2 30 49 -7.090 -7.297 -0.260 -2.724 -3.710 -3.699 -3.595 -0.003 -2.548 -4.163 2.701 -3.261 -3.611 0.190 -4.002 -1.745 1.448 -3.858 1.755 -2.501 ML 118 116 6 121 4 1 1 31 50 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 4 1 1 31 50 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 120 116 6 121 4 0 0 30 49 -4.568 -4.250 -2.265 -0.520 IL 121 121 5 121 4 1 1 33 52 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 122 122 6 122 3 1 1 31 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 24 - U - - - ML 123 122 6 125 5 1 1 28 47 -7.043 -0.040 -6.859 -7.071 -7.962 -1.380 -1.395 -2.108 1.587 D 124 122 6 125 5 0 0 27 46 -5.730 -0.416 -4.991 -3.366 -3.278 IL 125 125 3 125 5 1 1 28 47 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 25 37 G C - - MP 126 125 3 130 6 2 2 27 46 -9.163 -9.103 -0.020 -7.879 -8.159 -8.554 -3.706 -2.734 -3.670 0.827 -3.703 -4.253 0.775 -3.897 -3.745 3.058 -4.130 -0.449 1.105 -3.656 -1.235 -2.602 ML 127 125 3 130 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 3 130 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 3 130 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 26 36 G C - - MP 132 131 6 136 6 2 2 25 44 -9.163 -9.103 -0.020 -7.879 -8.159 -8.554 -5.005 -3.220 -5.133 0.022 -5.602 -4.795 -0.901 -5.391 -4.495 3.695 -4.814 -0.931 -1.280 -4.639 -2.953 -4.006 ML 133 131 6 136 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 27 35 u g - - MP 138 137 6 142 4 2 2 23 42 -7.090 -7.297 -0.048 -5.711 -3.728 -3.658 -3.596 -0.077 -2.606 -4.158 1.638 -3.298 -3.627 0.113 -4.004 -1.704 0.903 -3.895 2.896 -1.097 ML 139 137 6 142 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 141 137 6 142 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520 IL 142 142 5 142 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 143 143 6 143 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 28 - A - - - ML 144 143 6 146 3 1 1 20 39 -8.097 -0.019 -6.751 1.771 -2.641 -2.246 -2.210 D 145 143 6 146 3 0 0 19 38 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 29 - C - - - ML 147 146 3 149 3 1 1 19 37 -8.097 -0.019 -6.751 -2.067 1.701 -2.898 -1.415 D 148 146 3 149 3 0 0 18 37 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 30 - A - - - ML 150 149 3 152 3 1 1 17 36 -8.097 -0.019 -6.751 1.771 -2.641 -2.246 -2.210 D 151 149 3 152 3 0 0 17 36 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 31 - C - - - ML 153 152 3 155 3 1 1 16 35 -8.097 -0.019 -6.751 -2.067 1.701 -2.898 -1.415 D 154 152 3 155 3 0 0 16 34 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 32 - G - - - ML 156 155 3 158 3 1 1 15 33 -8.097 -0.019 -6.751 -1.862 -3.124 1.780 -2.512 D 157 155 3 158 3 0 0 15 33 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 33 - U - - - ML 159 158 3 161 3 1 1 13 31 -8.097 -0.019 -6.751 -1.735 -1.688 -2.480 1.683 D 160 158 3 161 3 0 0 13 32 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 34 - C - - - ML 162 161 3 164 2 1 1 1 1 * 0.000 -2.067 1.701 -2.898 -1.415 D 163 161 3 164 2 0 0 0 0 * 0.000 IL 164 164 3 164 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 36 ] - - - - - - E 165 164 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME RAGATH-31 ACC RF03101 DESC RAGATH-31 RNA LENG 54 MAXL 131 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 9 06:06:56 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03101/CM NSEQ 26 EFFN 3.488037 CKSUM 326732624 STATS LOCAL MSV -7.5720 0.71945 STATS LOCAL VITERBI -8.3122 0.71945 STATS LOCAL FORWARD -3.6318 0.71945 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.65814 1.18918 1.12264 1.71693 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 0.00000 * 1 2.92785 3.75204 0.10714 3.70443 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 2 2.71997 3.59034 0.13263 3.48191 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 3 0.18908 3.39861 2.28176 3.30342 3 A - - < 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 4 2.90715 3.72271 0.11028 3.66433 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 5 3.17851 4.11315 0.08689 3.68004 5 G - - - 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 6 0.09262 3.72169 3.40158 3.47540 6 A - - - 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 7 3.71021 0.14421 3.53970 2.51575 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 8 2.90389 3.71810 0.11079 3.65807 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 9 2.82825 1.66677 2.62040 0.38676 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 10 1.59493 2.86312 0.39463 2.71723 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 11 0.96944 2.53740 0.80411 2.36288 11 g - - < 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 12 2.90069 3.71360 0.11128 3.65196 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 13 2.90002 3.71267 0.11139 3.65070 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 14 0.48684 3.18913 1.22891 2.96388 14 A - - < 1.38629 1.38629 1.38629 1.38629 0.08037 2.79064 4.14474 0.45478 1.00673 1.09861 0.40547 15 1.01114 2.09253 2.06300 0.95257 16 u - - - 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 16 1.56851 0.69304 2.57286 1.53584 17 C - - - 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 17 0.51884 1.94561 2.41222 1.75868 18 A - - - 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 18 0.09262 3.72169 3.40158 3.47540 19 A - - - 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 19 2.47458 3.12406 0.21006 2.79211 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 20 2.90516 3.71989 0.11059 3.66050 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 21 2.37707 3.20248 0.19888 3.06038 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 22 2.83525 0.80317 2.62435 0.86536 23 c - - < 1.38629 1.38629 1.38629 1.38629 0.19555 4.14474 1.82156 1.46634 0.26236 1.09861 0.40547 23 2.76963 2.70671 3.29299 0.18222 24 U - - - 1.38629 1.38629 1.38629 1.38629 0.03782 3.98700 3.98700 1.46634 0.26236 0.17892 1.80895 24 2.16634 2.38248 0.46976 1.78419 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 25 2.89295 3.70273 0.11249 3.63726 26 G - - < 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 26 3.04770 1.79408 2.86300 0.31587 27 U - - < 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 27 0.09262 3.72169 3.40158 3.47540 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 28 3.42438 0.11456 3.98554 2.86308 29 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 29 0.09262 3.72169 3.40158 3.47540 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 30 3.42438 0.11456 3.98554 2.86308 31 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 31 3.17851 4.11315 0.08689 3.68004 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 32 3.07156 2.95957 3.60368 0.13400 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 33 3.42438 0.11456 3.98554 2.86308 34 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 34 2.29988 3.03981 0.26775 2.44427 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 35 3.73747 0.13890 3.51647 2.57482 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 36 1.90516 0.52881 2.19919 1.89045 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 37 1.75249 2.78876 0.36974 2.60032 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 38 3.27967 0.34371 3.01850 1.58792 39 C - - > 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 39 3.82271 0.13384 3.55886 2.59125 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 40 3.23562 0.22845 2.94310 2.18753 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 41 3.16637 2.07470 2.97794 0.24673 42 U - - > 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 42 3.82294 0.13382 3.55898 2.59129 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 43 3.82564 0.13367 3.56029 2.59180 44 C - - > 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 44 2.60016 1.12287 2.33947 0.68515 45 U - - > 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 45 2.95926 0.47042 2.67586 1.36825 46 C - - > 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 46 0.73270 2.78766 0.95885 2.59705 47 a - - > 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 47 3.84850 0.13239 3.57133 2.59600 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 48 2.80564 3.71789 0.12246 3.48989 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 49 1.85164 3.19541 0.29814 2.81557 50 G - - - 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 50 0.91513 1.34379 2.26916 1.44697 51 a - - - 1.38629 1.38629 1.38629 1.38629 0.21721 1.71817 4.14474 0.16818 1.86562 1.09861 0.40547 51 3.84782 0.13243 3.57101 2.59588 53 C - - > 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 52 3.53191 2.63314 3.20634 0.15269 54 U - - > 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 53 3.69233 0.17772 3.42695 2.24975 55 C - - > 1.38629 1.38629 1.38629 1.38629 0.03221 4.14474 4.14474 1.46634 0.26236 1.09861 0.40547 54 3.90989 0.12911 3.60034 2.60692 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.01623 4.12876 * 1.46634 0.26236 0.00000 * //