# STOCKHOLM 1.0
#=GF ID RAGATH-23
#=GF AC RF03099
#=GF DE RAGATH-23 RNA
#=GF AU Weinberg Z; 0000-0002-6681-3624
#=GF GA 92.6
#=GF NC 92.0
#=GF TC 93.9
#=GF SE Weinberg Z
#=GF SS Published; PMID:28977401;
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 26.15 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 28977401
#=GF RT Detection of 224 candidate structured RNAs by comparative analysis of
#=GF RT specific subsets of intergenic regions.
#=GF RA Weinberg Z, Lunse CE, Corbino KA, Ames TD, Nelson JW, Roth A, Perkins KR,
#=GF RA Sherlock ME, Breaker RR
#=GF RL Nucleic Acids Res. 2017;45:10811-10823.
#=GF CC Environmental. Nearby to self-cleaving ribozyme genes
#=GF WK RAGATH_RNA_motifs
#=GF SQ 11

URS0000D66EFF_12908/1-96  GCAAGAUGCAGCUU----UAAAAAUGGUAGUUA-UACCCCGCAUGAU-UAACUACAGGAUUUAACAUCAAAGGGGCGGA-CUCUU-CCCCUUUGGUGUAUGCCU
URS0000D6C6D0_12908/1-94  GCAAGAUGCAGCU-----UAAAGUUGGUAGUUA-UACCCCGCAUGAU-UAACUACAG-AUUUAACAUUCAGGGGGCGGA-CUCUU-CCCCCUGGGUGUAUGCCU
URS0000D67836_12908/1-98  GCAAGAUGCAGCUUAA--AAUAAAUGGUAGUUA-UACCCCGCAUGAU-UAACUACAGGAUUUAACAUUCAGGGGGCGGA-CUCUU-CCCCCUGGGUGUAUGCCU
URS0000D6951F_12908/1-97  GCAAGAUGCAGCUUU---AAAAAAUGGUAGUUA-UACCCCGCAUGAU-UAACUACAGGAUUUAACAUUCAGGGGGCGGA-CUCUU-CCCCCUGAGUGUAUGCCU
URS0000D686AE_12908/1-96  GCAAGAUGCAGCUU----UAAAAAUGGUAGUUA-UACCCCGCAUGAU-UAAUUACAGGAUUUAACAUUCAGGGGGCAGA-CUCUU-CCCCCUGGGUGUAUGCCU
URS0000D6B69D_12908/1-96  GCAAGAUGCAGCUU----UAAAAAUGGUAGUUA-UACCCCGCAUGAU-UAACUACAGGAUUUAACAUUCAGGGGGUGGA-CUCUU-CCCCCUGGGUGUAUGCCU
URS0000D659FF_12908/1-96  GCAAGAAUCGCA------AUCUUUUGGUAGUAAUAACCCCUCAUAACAUUACUACAGGAUUUAGCAAUCGGGGAG-AUA-CUCCUUCUCCCUGGUUGUAUGCCU
URS0000D69FB1_12908/1-103 GCAAGAAUCACAAUCUUAUUUAAACGGUAGUGAUAACCCCACAUGAUUUCACUAUAGGAUUUAGCUGCCCAGGAUGAGAACUCCU-GUCCUGGGUAGUAUGCCU
URS0000D6B813_12908/1-99  GCAAGAAUCACAGCUU--UCAAAAUGGUAGUGAUAACCCCACAUAAUGUCAUUACAGGAUUGAGCUGCCAGGGAA-UUA-CUCCU-UUCCCUGGUGGUAUGCCU
URS0000D6C819_12908/1-101 GCAAGAAUCACAGCUU--UCAAAAUGGUAGUGAUAACCCCACAUAAUGUCAUUACAGGAUUGAGCAUACCAGGGAUGUUACUCCU-UCCCUGGUGUGUAUGCCU
URS0000D6707E_12908/1-101 GCAAGAAUCACAAUCU--UAAAAAUGGUAGUGAUAACCCCACAUAAUGUCAUUACAGGAUUGAGCAUACCGGGAAUAUUACUCCU-UUCCCGGUGUGUAUGCCU
#=GC SS_cons              :::::::::::::::...::::::::<<<<<<<<_____________>>>>>>>>::::::::<<<<<<<<<<<<____._____.>>>>>>>>>>>>::::::
#=GC RF                   GCAAGAauCAgauuu...uaaAAAUGGUAGUgAcaACCCCaCAUgAUgUcACUACAGGAUUuAaCacccaGGGgguagA.CUCuU.ccCCCuggguGuAUGCCU
//
