INFERNAL1/a [1.1.5 | Sep 2023] NAME queA ACC RF03093 DESC queA RNA STATES 186 NODES 52 CLEN 59 W 112 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 09:50:03 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03093/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 8 EFFN 3.714844 CKSUM 873143656 NULL 0.000 0.000 0.000 0.000 GA 52.60 TC 53.10 NC 49.40 EFP7GF -12.2739 0.71918 ECMLC 0.79265 -7.40389 0.82143 1600000 814152 0.001474 ECMGC 0.42294 -15.90844 -2.98670 1600000 94523 0.004232 ECMLI 0.52005 -10.26457 1.53598 1600000 555115 0.002162 ECMGI 0.45741 -11.26739 0.16040 1600000 74505 0.005369 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 112 174 -7.416 -8.661 -0.055 -5.115 IL 1 1 2 1 4 1 19 113 175 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 21 113 176 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 82 - U - - MR 3 2 3 5 3 1 21 112 174 -8.881 -0.013 -7.199 -2.544 -2.365 -3.314 1.821 D 4 2 3 5 3 0 15 109 172 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 20 112 175 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 81 - A - - MR 6 5 3 8 3 1 20 111 173 -8.881 -0.013 -7.199 1.877 -3.485 -3.014 -3.141 D 7 5 3 8 3 0 14 108 171 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 19 111 174 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 80 - U - - MR 9 8 3 11 3 1 19 110 172 -2.311 -0.337 -7.199 -2.544 -2.365 -3.314 1.821 D 10 8 3 11 3 0 14 107 170 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 19 110 172 -2.880 -0.260 -5.118 0.000 0.000 0.000 0.000 [ MATR 4 ] - 78 - C - - MR 12 11 3 14 3 1 18 108 171 -8.881 -0.013 -7.199 -3.075 1.849 -3.875 -2.244 D 13 11 3 14 3 0 13 106 169 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 17 109 172 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 77 - G - - MR 15 14 3 17 3 1 17 107 170 -8.881 -0.013 -7.199 -2.695 -4.055 1.885 -3.425 D 16 14 3 17 3 0 12 105 168 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 16 108 171 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 76 - G - - MR 18 17 3 20 3 1 16 106 169 -8.881 -0.013 -7.199 -2.695 -4.055 1.885 -3.425 D 19 17 3 20 3 0 11 104 167 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 16 107 170 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 75 - U - - MR 21 20 3 23 3 1 15 105 168 -8.881 -0.013 -7.199 -2.544 -2.365 -3.314 1.821 D 22 20 3 23 3 0 11 103 166 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 15 106 169 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 74 - G - - MR 24 23 3 26 3 1 15 104 167 -8.881 -0.013 -7.199 -2.695 -4.055 1.885 -3.425 D 25 23 3 26 3 0 10 102 165 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 14 105 168 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 73 - U - - MR 27 26 3 29 3 1 14 103 166 -8.881 -0.013 -7.199 -2.544 -2.365 -3.314 1.821 D 28 26 3 29 3 0 9 101 164 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 13 104 167 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 72 - A - - MR 30 29 3 32 3 1 13 102 165 -8.881 -0.013 -7.199 1.128 -1.972 0.251 -1.438 D 31 29 3 32 3 0 9 100 163 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 12 103 166 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 71 - A - - MR 33 32 3 35 3 1 12 101 164 -8.881 -0.013 -7.199 1.497 -0.976 -1.827 -1.372 D 34 32 3 35 3 0 8 99 162 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 11 102 165 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 70 - G - - MR 36 35 3 38 3 1 11 101 163 -8.881 -0.013 -7.199 -0.985 -1.756 1.220 -0.202 D 37 35 3 38 3 0 7 98 161 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 11 101 164 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 69 - U - - MR 39 38 3 41 3 1 10 100 162 -8.881 -0.013 -7.199 -2.544 -2.365 -3.314 1.821 D 40 38 3 41 3 0 7 97 160 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 10 100 163 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 68 - C - - MR 42 41 3 44 3 1 9 99 161 -8.881 -0.013 -7.199 -3.075 1.849 -3.875 -2.244 D 43 41 3 44 3 0 6 96 159 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 9 99 162 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 67 - a - - MR 45 44 3 47 3 1 8 98 160 -8.881 -0.013 -7.199 0.702 -0.024 -1.283 -0.030 D 46 44 3 47 3 0 6 95 158 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 8 98 161 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 66 - A - - MR 48 47 3 50 3 1 7 97 159 -8.881 -0.013 -7.199 1.217 -1.995 0.091 -1.475 D 49 47 3 50 3 0 5 95 158 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 7 97 160 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 65 - A - - MR 51 50 3 53 2 1 6 96 158 -1.995 -0.417 1.056 -0.660 -0.517 -0.764 D 52 50 3 53 2 0 5 94 157 -4.432 -0.068 IR 53 53 3 53 2 1 6 96 158 -1.666 -0.546 0.000 0.000 0.000 0.000 [ BIF 18 ] - - - - - - B 54 53 3 55 111 0 5 94 157 [ BEGL 19 ] - - - - - - S 55 54 1 56 4 0 0 32 50 -0.035 -7.162 -6.570 -7.210 [ MATP 20 ] 1 20 U A - - MP 56 55 1 60 6 2 2 32 50 -4.293 -9.302 -0.092 -8.078 -8.358 -8.753 -5.677 -5.519 -5.338 -1.744 -4.016 -5.761 0.316 -4.797 -5.334 -1.648 -5.635 -3.382 3.746 -5.748 -1.658 -3.938 ML 57 55 1 60 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 58 55 1 60 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 59 55 1 60 6 0 0 28 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 60 60 5 60 6 1 1 31 50 -3.239 -1.135 -1.420 -5.157 -5.933 -5.594 0.000 0.000 0.000 0.000 IR 61 61 6 61 5 1 1 31 49 -2.843 -0.350 -6.354 -4.522 -5.628 0.000 0.000 0.000 0.000 [ MATP 21 ] 3 18 U A - - MP 62 61 6 66 6 2 2 29 48 -9.363 -9.302 -0.018 -8.078 -8.358 -8.753 -5.677 -5.519 -5.338 -1.744 -4.016 -5.761 0.316 -4.797 -5.334 -1.648 -5.635 -3.382 3.746 -5.748 -1.658 -3.938 ML 63 61 6 66 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 64 61 6 66 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 65 61 6 66 6 0 0 26 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 66 66 5 66 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 67 67 6 67 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 4 17 C G - - MP 68 67 6 72 6 2 2 27 46 -9.363 -9.302 -0.018 -8.078 -8.358 -8.753 -4.180 -3.920 -4.059 -0.079 -3.011 -4.684 3.196 -3.685 -4.036 1.307 -4.439 -1.704 0.805 -4.329 -0.631 -2.865 ML 69 67 6 72 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 70 67 6 72 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 71 67 6 72 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 72 72 5 72 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 73 73 6 73 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 5 16 A U - - MP 74 73 6 78 6 2 2 25 44 -9.363 -9.302 -0.018 -8.078 -8.358 -8.753 -4.865 -3.675 -4.740 3.743 -5.706 -6.918 -1.334 -4.709 -4.666 -0.094 -5.262 -1.018 -1.738 -5.877 -3.267 -3.565 ML 75 73 6 78 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 76 73 6 78 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 77 73 6 78 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 78 78 5 78 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 79 79 6 79 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 6 15 U A - - MP 80 79 6 84 6 2 2 23 42 -9.363 -9.302 -0.018 -8.078 -8.358 -8.753 -5.677 -5.519 -5.338 -1.744 -4.016 -5.761 0.316 -4.797 -5.334 -1.648 -5.635 -3.382 3.746 -5.748 -1.658 -3.938 ML 81 79 6 84 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 82 79 6 84 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 83 79 6 84 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 84 84 5 84 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 85 85 6 85 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 7 14 G C - - MP 86 85 6 90 4 2 2 21 40 -7.540 -7.747 -0.035 -6.161 -5.809 -3.619 -6.098 -0.557 -6.708 -5.088 -1.809 -6.354 -4.958 3.815 -5.234 -1.379 -2.173 -5.147 -3.919 -4.960 ML 87 85 6 90 4 1 1 23 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 88 85 6 90 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 89 85 6 90 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 90 90 5 90 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 91 91 6 91 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 8 - C - - - ML 92 91 6 94 3 1 1 18 37 -8.521 -0.014 -7.175 -3.075 1.849 -3.875 -2.244 D 93 91 6 94 3 0 0 18 37 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 9 - C - - - ML 95 94 3 97 3 1 1 17 36 -8.521 -0.014 -7.175 -3.075 1.849 -3.875 -2.244 D 96 94 3 97 3 0 0 17 35 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 10 - G - - - ML 98 97 3 100 3 1 1 16 34 -8.521 -0.014 -7.175 -2.695 -4.055 1.885 -3.425 D 99 97 3 100 3 0 0 16 34 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 11 - U - - - ML 101 100 3 103 3 1 1 14 33 -8.521 -0.014 -7.175 -0.614 -1.441 -1.980 1.446 D 102 100 3 103 3 0 0 15 33 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 12 - A - - - ML 104 103 3 106 3 1 1 13 31 -8.521 -0.014 -7.175 1.877 -3.485 -3.014 -3.141 D 105 103 3 106 3 0 0 13 32 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 13 - A - - - ML 107 106 3 109 2 1 1 1 1 * 0.000 1.877 -3.485 -3.014 -3.141 D 108 106 3 109 2 0 0 0 0 * 0.000 IL 109 109 3 109 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 32 ] - - - - - - E 110 109 3 -1 0 0 0 0 0 [ BEGR 33 ] - - - - - - S 111 54 1 112 3 0 0 76 139 -8.521 -0.014 -7.175 IL 112 112 2 112 3 1 1 78 140 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 21 - G - - - ML 113 112 2 115 3 1 1 76 139 -8.521 -0.014 -7.175 -0.632 -2.644 1.566 -2.102 D 114 112 2 115 3 0 0 74 137 -6.174 -1.687 -0.566 IL 115 115 3 115 3 1 1 77 139 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 22 - c - - - ML 116 115 3 118 3 1 1 75 138 -8.521 -0.014 -7.175 -1.249 0.878 -2.104 0.594 D 117 115 3 118 3 0 0 73 136 -6.174 -1.687 -0.566 IL 118 118 3 118 3 1 1 76 138 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 23 - G - - - ML 119 118 3 121 3 1 1 74 137 -8.521 -0.014 -7.175 -1.328 -2.217 1.500 -0.842 D 120 118 3 121 3 0 0 72 135 -6.174 -1.687 -0.566 IL 121 121 3 121 3 1 1 75 137 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 24 - A - - - ML 122 121 3 124 5 1 1 73 136 -3.255 -0.182 -7.405 -7.618 -8.509 1.096 -1.320 -1.445 0.131 D 123 121 3 124 5 0 0 71 134 -4.959 -0.803 -4.221 -2.596 -2.508 IL 124 124 3 124 5 1 1 74 137 -0.911 -1.224 -5.452 -7.285 -6.558 0.000 0.000 0.000 0.000 [ MATP 38 ] 29 62 g c - - MP 125 124 3 129 6 2 2 72 135 -9.363 -9.302 -0.018 -8.078 -8.358 -8.753 -3.296 -2.673 -3.308 1.598 -3.231 -4.052 1.487 -3.528 -3.451 2.444 -3.894 -0.488 1.256 -3.345 -0.856 -2.280 ML 126 124 3 129 6 1 1 70 132 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 127 124 3 129 6 1 1 69 132 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 128 124 3 129 6 0 0 65 128 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 129 129 5 129 6 1 1 71 134 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 130 130 6 130 5 1 1 71 134 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 30 61 c g - - MP 131 130 6 135 6 2 2 70 133 -9.363 -9.302 -0.018 -8.078 -8.358 -8.753 -2.957 0.069 -3.053 0.417 -2.529 -3.816 2.554 -3.061 -3.070 0.558 -3.577 -1.205 1.096 -3.223 1.345 -2.095 ML 132 130 6 135 6 1 1 68 131 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 133 130 6 135 6 1 1 67 130 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 134 130 6 135 6 0 0 64 126 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 135 135 5 135 6 1 1 69 132 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 136 136 6 136 5 1 1 69 132 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 31 60 u a - - MP 137 136 6 141 6 2 2 68 131 -9.363 -9.302 -0.102 -4.058 -8.358 -8.753 -4.021 -3.981 -3.921 -0.174 -2.848 -4.526 2.406 -3.556 -3.911 0.001 -4.322 -1.930 2.657 -4.177 0.553 -2.773 ML 138 136 6 141 6 1 1 66 129 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 139 136 6 141 6 1 1 65 128 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 140 136 6 141 6 0 0 62 124 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 141 141 5 141 6 1 1 67 130 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 142 142 6 142 5 1 1 67 130 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 32 59 g c - - MP 143 142 6 147 6 2 2 66 129 -9.279 -9.218 -0.019 -7.995 -8.275 -8.670 -3.248 -2.604 -3.259 0.982 -3.195 -3.997 1.573 -3.483 -3.401 2.524 -3.840 0.279 1.262 -3.291 -0.811 -2.228 ML 144 142 6 147 6 1 1 64 127 -7.171 -7.517 -0.546 -1.926 -7.367 -4.897 -0.461 -0.674 -1.112 1.127 MR 145 142 6 147 6 1 1 63 126 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 146 142 6 147 6 0 0 60 123 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 147 147 5 147 6 1 1 65 128 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 148 148 6 148 5 1 1 65 128 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 33 58 c g - - MP 149 148 6 153 6 2 2 64 127 -3.240 -4.291 -0.262 -8.078 -8.358 -8.753 -3.549 -3.441 -3.573 1.145 -2.745 -4.330 2.558 -3.354 -3.544 0.566 -4.033 -1.351 2.104 -3.764 -0.390 -2.428 ML 150 148 6 153 6 1 1 61 124 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 151 148 6 153 6 1 1 61 124 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 152 148 6 153 6 0 0 58 121 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 153 153 5 153 6 1 1 63 126 -3.732 -0.707 -1.912 -5.650 -6.426 -6.086 0.000 0.000 0.000 0.000 IR 154 154 6 154 5 1 1 63 125 -1.608 -0.967 -7.423 -5.591 -2.903 0.000 0.000 0.000 0.000 [ MATP 43 ] 35 55 C G - - MP 155 154 6 159 6 2 2 62 124 -9.289 -9.229 -0.108 -8.005 -8.285 -4.019 -3.890 -3.668 -3.816 1.279 -2.863 -4.490 3.085 -3.505 -3.793 0.365 -4.221 -1.494 0.935 -4.081 -0.508 -2.656 ML 156 154 6 159 6 1 1 59 122 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 157 154 6 159 6 1 1 59 121 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 158 154 6 159 6 0 0 58 121 -10.049 -8.747 -4.544 -5.226 -5.244 -0.151 IL 159 159 5 159 6 1 1 61 124 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 160 160 6 160 5 1 1 61 123 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 36 54 c g - - MP 161 160 6 165 4 2 2 60 123 -1.535 -7.389 -0.664 -5.803 -3.663 -3.350 -3.615 0.394 -2.785 -4.299 2.863 -3.385 -3.611 1.668 -4.046 -1.172 1.068 -3.822 -0.418 -2.468 ML 162 160 6 165 4 1 1 55 118 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 163 160 6 165 4 1 1 54 117 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 164 160 6 165 4 0 0 58 120 -6.153 -1.425 -1.392 -2.104 IL 165 165 5 165 4 1 1 61 124 -3.140 -0.503 -2.571 -6.309 0.000 0.000 0.000 0.000 IR 166 166 6 166 3 1 1 61 124 -0.423 -2.020 -7.019 0.000 0.000 0.000 0.000 [ MATL 45 ] 38 - u - - - ML 167 166 6 169 3 1 1 18 37 -8.521 -0.014 -7.175 -0.543 -0.421 -0.166 0.744 D 168 166 6 169 3 0 0 18 36 -6.174 -1.687 -0.566 IL 169 169 3 169 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 39 - u - - - ML 170 169 3 172 3 1 1 17 36 -8.521 -0.014 -7.175 -0.623 0.217 -0.688 0.649 D 171 169 3 172 3 0 0 17 35 -6.174 -1.687 -0.566 IL 172 172 3 172 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 40 - A - - - ML 173 172 3 175 3 1 1 16 34 -8.521 -0.014 -7.175 1.030 0.055 -1.529 -0.806 D 174 172 3 175 3 0 0 16 34 -6.174 -1.687 -0.566 IL 175 175 3 175 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 41 - a - - - ML 176 175 3 178 3 1 1 14 33 -8.521 -0.351 -2.231 0.559 -0.328 -0.471 0.013 D 177 175 3 178 3 0 0 14 33 -6.174 -1.687 -0.566 IL 178 178 3 178 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 42 - a - - - ML 179 178 3 181 3 1 1 13 31 -8.188 -0.234 -2.771 0.559 0.462 -1.293 -0.431 D 180 178 3 181 3 0 0 12 30 -8.101 -3.614 -0.129 IL 181 181 3 181 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 43 - U - - - ML 182 181 3 184 2 1 1 1 1 * 0.000 -0.856 -0.304 -1.601 1.207 D 183 181 3 184 2 0 0 0 0 * 0.000 IL 184 184 3 184 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 51 ] - - - - - - E 185 184 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME queA ACC RF03093 DESC queA RNA LENG 59 MAXL 158 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 09:50:03 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03093/CM NSEQ 8 EFFN 5.886719 CKSUM 873143656 STATS LOCAL MSV -7.4602 0.71918 STATS LOCAL VITERBI -8.6064 0.71918 STATS LOCAL FORWARD -3.5720 0.71918 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.35301 1.51402 1.38915 1.30111 1.38629 1.38629 1.38629 1.38629 0.02195 4.52306 4.52306 1.46634 0.26236 0.00000 * 1 4.53125 3.18741 4.41919 0.06624 1 U - - < 1.38629 1.38629 1.38629 1.38629 0.14243 2.10458 4.52306 0.16948 1.85855 1.09861 0.40547 2 4.44958 3.17678 4.36993 0.06834 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.02195 4.52306 4.52306 1.46634 0.26236 1.09861 0.40547 3 3.04114 0.40686 1.77380 2.14732 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.02195 4.52306 4.52306 1.46634 0.26236 1.09861 0.40547 4 0.08794 4.23146 2.94355 4.07585 5 A - - < 1.38629 1.38629 1.38629 1.38629 0.02195 4.52306 4.52306 1.46634 0.26236 1.09861 0.40547 5 4.46635 3.17903 4.38018 0.06789 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.02195 4.52306 4.52306 1.46634 0.26236 1.09861 0.40547 6 3.35887 4.32377 0.06388 4.27920 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.02195 4.52306 4.52306 1.46634 0.26236 1.09861 0.40547 7 4.15464 0.05673 4.63184 3.51599 8 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02195 4.52306 4.52306 1.46634 0.26236 1.09861 0.40547 8 4.15464 0.05673 4.63184 3.51599 9 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02195 4.52306 4.52306 1.46634 0.26236 1.09861 0.40547 9 3.79040 4.78443 0.04548 4.30414 10 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02195 4.52306 4.52306 1.46634 0.26236 1.09861 0.40547 10 1.93431 2.72959 3.14836 0.29128 11 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02195 4.52306 4.52306 1.46634 0.26236 1.09861 0.40547 11 0.04629 4.39294 4.02898 4.19468 12 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02195 4.52306 4.52306 1.46634 0.26236 1.09861 0.40547 12 0.04629 4.39294 4.02898 4.19468 13 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02195 4.52306 4.52306 1.46634 0.26236 1.09861 0.40547 13 4.38438 0.07850 4.19122 3.03863 14 C - - > 1.38629 1.38629 1.38629 1.38629 0.02195 4.52306 4.52306 1.46634 0.26236 1.09861 0.40547 14 0.07806 4.56921 3.00417 4.19033 15 A - - > 1.38629 1.38629 1.38629 1.38629 0.02195 4.52306 4.52306 1.46634 0.26236 1.09861 0.40547 15 4.25866 3.34478 4.02810 0.06958 16 U - - > 1.38629 1.38629 1.38629 1.38629 0.02195 4.52306 4.52306 1.46634 0.26236 1.09861 0.40547 16 2.40432 1.83849 0.37273 2.78436 17 G - - > 1.38629 1.38629 1.38629 1.38629 0.02195 4.52306 4.52306 1.46634 0.26236 1.09861 0.40547 17 0.07955 4.53003 2.99638 4.15302 18 A - - > 1.38629 1.38629 1.38629 1.38629 0.14243 2.10458 4.52306 0.16948 1.85855 1.09861 0.40547 18 0.07824 4.56432 3.00321 4.18568 20 A - - > 1.38629 1.38629 1.38629 1.38629 0.02195 4.52306 4.52306 1.46634 0.26236 1.09861 0.40547 19 1.93196 3.61958 0.23531 3.26972 21 G - - - 1.38629 1.38629 1.38629 1.38629 0.02195 4.52306 4.52306 1.46634 0.26236 1.09861 0.40547 20 2.61782 0.68300 3.25319 0.95896 22 C - - - 1.38629 1.38629 1.38629 1.38629 0.02195 4.52306 4.52306 1.46634 0.26236 1.09861 0.40547 21 2.69743 3.34692 0.26017 2.06744 23 G - - - 1.38629 1.38629 1.38629 1.38629 0.02195 4.52306 4.52306 1.46634 0.26236 1.09861 0.40547 22 0.54250 2.56421 2.65805 1.30328 24 A - - - 1.38629 1.38629 1.38629 1.38629 0.15763 2.00263 4.52306 1.39044 0.28630 1.09861 0.40547 23 1.50720 1.72524 0.89334 1.65519 29 g - - < 1.38629 1.38629 1.38629 1.38629 0.02195 4.52306 4.52306 1.46634 0.26236 1.09861 0.40547 24 1.85760 0.80366 2.55156 1.14474 30 c - - < 1.38629 1.38629 1.38629 1.38629 0.02195 4.52306 4.52306 1.46634 0.26236 1.09861 0.40547 25 3.04247 1.06875 2.81994 0.59923 31 U - - < 1.38629 1.38629 1.38629 1.38629 0.02195 4.52306 4.52306 1.46634 0.26236 1.09861 0.40547 26 2.02308 1.66183 0.80312 1.46954 32 g - - < 1.38629 1.38629 1.38629 1.38629 0.02195 4.52306 4.52306 1.46634 0.26236 1.09861 0.40547 27 1.84916 0.90848 2.29199 1.08345 33 c - - < 1.38629 1.38629 1.38629 1.38629 0.45645 1.40823 2.10458 0.08652 2.49029 1.09861 0.40547 28 1.75427 0.47932 2.59289 2.01771 35 C - - < 1.38629 1.38629 1.38629 1.38629 0.18181 4.40536 1.87061 1.46634 0.26236 2.58240 0.07860 29 2.55457 0.62335 1.48502 1.83490 36 C - - < 1.38629 1.38629 1.38629 1.38629 0.52601 0.92934 4.25242 0.07059 2.68599 0.08393 2.51939 30 1.93934 1.70013 1.45642 0.81991 38 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02195 4.52306 4.52306 1.46634 0.26236 1.09861 0.40547 31 2.01562 1.16739 1.88332 0.90758 39 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02195 4.52306 4.52306 1.46634 0.26236 1.09861 0.40547 32 0.58364 1.28503 2.77444 2.27195 40 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02195 4.52306 4.52306 1.46634 0.26236 1.09861 0.40547 33 0.96881 1.60709 1.72820 1.41720 41 a - - _ 1.38629 1.38629 1.38629 1.38629 0.29495 4.52306 1.40823 1.46634 0.26236 1.09861 0.40547 34 0.95063 0.96279 2.52592 1.88590 42 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02874 4.25686 4.25686 1.46634 0.26236 3.19988 0.04162 35 2.25673 1.63394 2.78530 0.44873 43 U - - _ 1.38629 1.38629 1.38629 1.38629 0.80897 0.92734 1.83837 1.87198 0.16702 0.08505 2.50673 36 2.08171 1.56522 0.56603 2.31803 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.02473 4.40536 4.40536 1.46634 0.26236 0.16391 1.88925 37 2.27270 2.79579 0.43449 1.66968 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.29495 1.40823 4.52306 0.72429 0.66295 1.09861 0.40547 38 1.19186 2.48551 0.82657 1.74003 58 g - - > 1.38629 1.38629 1.38629 1.38629 0.15991 4.52306 1.98831 1.46634 0.26236 1.09861 0.40547 39 1.80111 0.90534 1.51339 1.55914 59 c - - > 1.38629 1.38629 1.38629 1.38629 0.02516 4.38831 4.38831 1.46634 0.26236 0.14718 1.98878 40 0.78024 2.99207 0.84117 2.80814 60 a - - > 1.38629 1.38629 1.38629 1.38629 0.02195 4.52306 4.52306 1.46634 0.26236 1.09861 0.40547 41 2.19151 1.85038 0.42884 2.52813 61 G - - > 1.38629 1.38629 1.38629 1.38629 0.02195 4.52306 4.52306 1.46634 0.26236 1.09861 0.40547 42 1.81777 0.97151 1.59847 1.35909 62 c - - > 1.38629 1.38629 1.38629 1.38629 0.31733 1.34304 4.52306 0.44986 1.01532 1.09861 0.40547 43 0.57460 1.86738 1.77975 2.17280 65 A - - : 1.38629 1.38629 1.38629 1.38629 0.02195 4.52306 4.52306 1.46634 0.26236 1.09861 0.40547 44 0.46808 3.22443 1.27401 2.91306 66 A - - : 1.38629 1.38629 1.38629 1.38629 0.02195 4.52306 4.52306 1.46634 0.26236 1.09861 0.40547 45 0.84744 1.35994 2.46874 1.46916 67 a - - : 1.38629 1.38629 1.38629 1.38629 0.02195 4.52306 4.52306 1.46634 0.26236 1.09861 0.40547 46 4.15464 0.05673 4.63184 3.51599 68 C - - : 1.38629 1.38629 1.38629 1.38629 0.02195 4.52306 4.52306 1.46634 0.26236 1.09861 0.40547 47 3.72776 3.52396 4.27246 0.06986 69 U - - : 1.38629 1.38629 1.38629 1.38629 0.02195 4.52306 4.52306 1.46634 0.26236 1.09861 0.40547 48 2.41371 2.98137 0.42738 1.57226 70 G - - : 1.38629 1.38629 1.38629 1.38629 0.02195 4.52306 4.52306 1.46634 0.26236 1.09861 0.40547 49 0.26798 2.10456 3.02765 2.73725 71 A - - : 1.38629 1.38629 1.38629 1.38629 0.02195 4.52306 4.52306 1.46634 0.26236 1.09861 0.40547 50 0.52996 3.20892 1.15485 2.88483 72 A - - : 1.38629 1.38629 1.38629 1.38629 0.02195 4.52306 4.52306 1.46634 0.26236 1.09861 0.40547 51 3.72776 3.52396 4.27246 0.06986 73 U - - : 1.38629 1.38629 1.38629 1.38629 0.02195 4.52306 4.52306 1.46634 0.26236 1.09861 0.40547 52 3.79040 4.78443 0.04548 4.30414 74 G - - : 1.38629 1.38629 1.38629 1.38629 0.02195 4.52306 4.52306 1.46634 0.26236 1.09861 0.40547 53 3.72776 3.52396 4.27246 0.06986 75 U - - : 1.38629 1.38629 1.38629 1.38629 0.02195 4.52306 4.52306 1.46634 0.26236 1.09861 0.40547 54 3.79040 4.78443 0.04548 4.30414 76 G - - : 1.38629 1.38629 1.38629 1.38629 0.02195 4.52306 4.52306 1.46634 0.26236 1.09861 0.40547 55 3.79040 4.78443 0.04548 4.30414 77 G - - : 1.38629 1.38629 1.38629 1.38629 0.02195 4.52306 4.52306 1.46634 0.26236 1.09861 0.40547 56 4.15464 0.05673 4.63184 3.51599 78 C - - : 1.38629 1.38629 1.38629 1.38629 0.29952 1.39446 4.52306 0.08537 2.50316 1.09861 0.40547 57 3.72776 3.52396 4.27246 0.06986 80 U - - : 1.38629 1.38629 1.38629 1.38629 0.02195 4.52306 4.52306 1.46634 0.26236 1.09861 0.40547 58 0.04629 4.39294 4.02898 4.19468 81 A - - : 1.38629 1.38629 1.38629 1.38629 0.02195 4.52306 4.52306 1.46634 0.26236 1.09861 0.40547 59 3.72776 3.52396 4.27246 0.06986 82 U - - : 1.38629 1.38629 1.38629 1.38629 0.01104 4.51215 * 1.46634 0.26236 0.00000 * //