# STOCKHOLM 1.0
#=GF ID queA
#=GF AC RF03093
#=GF DE queA RNA
#=GF AU Weinberg Z; 0000-0002-6681-3624
#=GF GA 52.6
#=GF NC 49.4
#=GF TC 53.1
#=GF SE Weinberg Z
#=GF SS Published; PMID:28977401;
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 27.01 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 28977401
#=GF RT Detection of 224 candidate structured RNAs by comparative analysis of
#=GF RT specific subsets of intergenic regions.
#=GF RA Weinberg Z, Lunse CE, Corbino KA, Ames TD, Nelson JW, Roth A, Perkins KR,
#=GF RA Sherlock ME, Breaker RR
#=GF RL Nucleic Acids Res. 2017;45:10811-10823.
#=GF CC Environmental. Downstream gene
#=GF WK QueA_RNA_motif
#=GF SQ 8

URS0000D6655D_12908/1-59 UAUCAUGCCGAAACAUGACAAUGU----CCUUU----UUAAAU-------------AAAAGG--AGACUGCGUGUGGCCUAU
URS0000D6AE08_12908/1-66 U-UCAUGCCGUAACAUGA-AGUUUUGCAUAUCC-CGCUGCUA----------GCG--GGACAGUGAACUGAAUGUGGC-UAU
URS0000D6A81E_12908/1-61 U-UGAUGCCGUAACAUCA-AGCGA----ACUUA-A--CCAGCUAAU--------U--U-AGU-UCGUCUUAAUGUGGCCUAU
URS0000D6C301_12908/1-70 U-UCAUGCCGUAACAUGA-AGCGA----GUCGU-CCUUCCCCCAGUUUACAUGGG--ACGGC--AAACUGAGUGUGGC-UAU
URS0000D688C5_12908/1-70 U-UCAUGCCGUAACAUGA-AGCGA----GUCGU-CCUUCCCCUAGUUUACAUGGG--ACGGC--AACCUGAGUGUGGC-UAU
URS0000D68EC8_12908/1-60 U-UCAUGCCGUAACAUGA-AGCGA----ACUGCCCC-GUAA------------GGCUGUAGU--AAACUUAAUGUGGC-UAU
URS0000D6C75B_12908/1-60 U-UCAUGCCGUAACAUGA-AGUGA----GCUGCCCC-GUAA------------GGCGGCGGC--AACCUGAAUGUGGC-UAU
URS0000D6B41C_12908/1-60 U-UCAUGCCGUAACAUGA-AGCGA----GUCGCCCC-GUAA------------GGCGGCGGC--AACCUGAAUGUGGC-UAU
#=GC SS_cons             <.<<<<<______>>>>>.>::::....<<<<<.<<.______..........>>..>>>>>..::::::::::::::.:::
#=GC RF                  U.UCAUGCCGUAACAUGA.AGcGA....gcugc.Cc.uuAaaU..........gG..gcagc..AAaCUGAAUGUGGC.UAU
//
