# STOCKHOLM 1.0
#=GF ID Ocean-VII
#=GF AC RF03092
#=GF DE Ocean-VII RNA
#=GF AU Weinberg Z; 0000-0002-6681-3624
#=GF GA 53.5
#=GF NC 37.8
#=GF TC 53.7
#=GF SE Weinberg Z
#=GF SS Published; PMID:28977401;
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 18.62 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 28977401
#=GF RT Detection of 224 candidate structured RNAs by comparative analysis of
#=GF RT specific subsets of intergenic regions.
#=GF RA Weinberg Z, Lunse CE, Corbino KA, Ames TD, Nelson JW, Roth A, Perkins KR,
#=GF RA Sherlock ME, Breaker RR
#=GF RL Nucleic Acids Res. 2017;45:10811-10823.
#=GF CC marine metagenomes. Environment (Puerto Rico trench)
#=GF WK Ocean-VII_RNA_motif
#=GF SQ 16

URS0000D68EB5_12908/1-39 UAAGUAUCAGGGAUCAG-A-GGAGG-AACAAGCCUCCCAGAC
URS0000D686D3_12908/1-41 UAAGUAUCAGGGAUCAG-AGGGAGGGAACAAGCCUCCCAGAC
URS0000D694AC_12908/1-41 UGAGUCUCAGGGAUCAG-AGAGUAGGCACAAGCUACUCAGAC
URS0000D6B472_12908/1-40 UGAGUACCAGAGAUCAG-AGGGAGG-AACAAGCCUCUCAGAC
URS0000D690FC_12908/1-41 UGAGUGCCAGAGAUCAG-AGGGUGGGAACAAGCCACUCAGAC
URS0000D6A2F3_12908/1-41 UGAGUGUCAGGGAUCAG-AGAGUGGGAACAAGCCACUCAGAC
URS0000D67B18_12908/1-41 UGAGUAUCAGGGAUCAA-AGAGUGGGAACAAGCCACUCAGAC
URS0000D67FBF_12908/1-41 UGAGUAUCAGGGAUCAG-AGAGUGGGAACAAGCCACUCAGAC
URS0000D6766C_12908/1-41 UGAGUACCAGGGAUCAG-AGAGUGGGAACAAGCCACUCAGAC
URS0000D661A9_12908/1-42 UGAGUAUCAGAGAUUAGUAGGGGGAGAACAAGUCCCUCAGAC
URS0000D6A45C_12908/1-41 UUAGUAACAGAGAUCAG-AGAGGGAGAACAAGUCCCUCAGAC
URS0000D6CCE7_12908/1-41 UUAGUACCAGAGAUCAG-AGAGGGAGAACAAGUCCCUCAGAC
URS0000D6CC4D_12908/1-41 UGAGUGUCAGGGAUCAG-AGAGGGAGAACAAGUCCCUCAGAC
URS0000D66A1C_12908/1-40 UUAGUCUCAGGGAUCAG-AAGGGGUGAACAAGACCCU-AGAC
URS0000D6D113_12908/1-41 UGAGUGUCAGGGAUCAG-AAGGGGUGAACAAGACCCUUAGAC
URS0000D6B227_12908/1-41 UGAGUACCAGAGAUCAG-AAGGGGAGAACAAGACCCCUAGAC
#=GC SS_cons             :::::::::::::::::.:<<<<<<_______>>>>>>::::
#=GC RF                  UGAGUAUCAGGGAUCAG.AGaGgGgGAACAAGcCcCuCAGAC
//
