INFERNAL1/a [1.1.5 | Sep 2023] NAME Clostridium-PBP ACC RF03091 DESC Clostridium-PBP RNA STATES 223 NODES 70 CLEN 73 W 89 ALPH RNA RF no CONS yes MAP yes DATE Fri Jul 5 09:38:22 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03091/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 11 EFFN 1.866455 CKSUM 644031293 NULL 0.000 0.000 0.000 0.000 GA 94.40 TC 94.40 NC 41.70 EFP7GF -8.1990 0.71872 ECMLC 0.45158 -11.45008 2.49202 1600000 650898 0.001844 ECMGC 0.35172 -18.27737 -1.80125 1600000 131466 0.003043 ECMLI 0.43984 -8.74065 4.73827 1600000 450712 0.002662 ECMGI 0.37912 -12.22115 2.18080 1600000 94039 0.004254 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 89 109 -6.922 -7.129 -0.054 -5.543 IL 1 1 2 1 4 1 31 93 113 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 30 92 112 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 30 89 109 -7.940 -0.021 -6.594 1.708 -2.323 -1.960 -1.861 D 4 2 3 5 3 0 25 87 107 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 29 91 111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 1 30 88 108 -7.940 -0.021 -6.594 1.708 -2.323 -1.960 -1.861 D 7 5 3 8 3 0 24 86 106 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 29 90 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 1 29 87 106 -7.940 -0.021 -6.594 1.708 -2.323 -1.960 -1.861 D 10 8 3 11 3 0 23 85 105 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 28 89 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 1 28 86 105 -7.940 -0.021 -6.594 1.708 -2.323 -1.960 -1.861 D 13 11 3 14 3 0 22 84 104 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 27 88 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 27 85 104 -7.940 -0.021 -6.594 1.112 -1.414 -0.134 -0.858 D 16 14 3 17 3 0 22 83 103 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 26 87 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - G - - - ML 18 17 3 20 3 1 26 84 103 -7.940 -0.021 -6.594 -1.529 -2.741 1.712 -2.128 D 19 17 3 20 3 0 21 82 102 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 26 86 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 21 20 3 23 3 1 26 82 102 -7.940 -0.021 -6.594 -1.441 -1.445 -2.173 1.605 D 22 20 3 23 3 0 20 81 101 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 25 84 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - G - - - ML 24 23 3 26 3 1 25 81 101 -7.940 -0.021 -6.594 -1.529 -2.741 1.712 -2.128 D 25 23 3 26 3 0 19 80 100 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 24 83 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - c - - - ML 27 26 3 29 3 1 24 80 100 -7.940 -0.021 -6.594 0.094 0.778 -1.286 -0.307 D 28 26 3 29 3 0 19 79 99 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 23 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - U - - - ML 30 29 3 32 3 1 23 79 99 -7.940 -0.021 -6.594 -1.441 -1.445 -2.173 1.605 D 31 29 3 32 3 0 18 78 98 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 22 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - A - - - ML 33 32 3 35 3 1 23 78 98 -7.940 -0.021 -6.594 1.708 -2.323 -1.960 -1.861 D 34 32 3 35 3 0 17 77 97 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 22 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - U - - - ML 36 35 3 38 3 1 22 77 97 -7.940 -0.021 -6.594 -1.441 -1.445 -2.173 1.605 D 37 35 3 38 3 0 16 76 95 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 21 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - A - - - ML 39 38 3 41 3 1 21 76 96 -7.940 -0.021 -6.594 1.708 -2.323 -1.960 -1.861 D 40 38 3 41 3 0 16 75 94 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 20 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - G - - - ML 42 41 3 44 3 1 20 75 94 -7.940 -0.021 -6.594 -1.529 -2.741 1.712 -2.128 D 43 41 3 44 3 0 15 74 93 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 19 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - U - - - ML 45 44 3 47 3 1 20 74 93 -7.940 -0.021 -6.594 -1.441 -1.445 -2.173 1.605 D 46 44 3 47 3 0 14 73 92 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 19 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - A - - - ML 48 47 3 50 3 1 19 73 92 -7.940 -0.021 -6.594 1.708 -2.323 -1.960 -1.861 D 49 47 3 50 3 0 13 72 91 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 18 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - A - - - ML 51 50 3 53 3 1 18 72 91 -7.940 -0.021 -6.594 1.708 -2.323 -1.960 -1.861 D 52 50 3 53 3 0 13 71 90 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 17 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - u - - - ML 54 53 3 56 3 1 17 71 90 -7.940 -0.021 -6.594 -0.707 0.147 -1.467 0.940 D 55 53 3 56 3 0 12 69 89 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 16 73 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - c - - - ML 57 56 3 59 3 1 16 70 89 -7.940 -0.021 -6.594 -0.732 0.737 -1.524 0.468 D 58 56 3 59 3 0 11 68 88 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 16 72 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - A - - - ML 60 59 3 62 3 1 16 69 88 -7.940 -0.021 -6.594 1.708 -2.323 -1.960 -1.861 D 61 59 3 62 3 0 10 67 87 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 15 71 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - A - - - ML 63 62 3 65 3 1 15 68 87 -7.940 -0.021 -6.594 1.708 -2.323 -1.960 -1.861 D 64 62 3 65 3 0 10 66 86 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 14 70 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - A - - - ML 66 65 3 68 3 1 14 66 86 -7.940 -0.021 -6.594 1.039 -0.355 -1.119 -0.507 D 67 65 3 68 3 0 9 65 84 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 13 69 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - G - - - ML 69 68 3 71 3 1 13 65 84 -7.940 -0.021 -6.594 -1.529 -2.741 1.712 -2.128 D 70 68 3 71 3 0 8 64 83 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 13 68 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - U - - - ML 72 71 3 74 3 1 13 64 83 -7.940 -0.021 -6.594 -1.441 -1.445 -2.173 1.605 D 73 71 3 74 3 0 7 63 82 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 12 67 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - U - - - ML 75 74 3 77 3 1 12 63 82 -7.940 -0.021 -6.594 -1.441 -1.445 -2.173 1.605 D 76 74 3 77 3 0 7 62 81 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 11 66 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - U - - - ML 78 77 3 80 3 1 11 62 81 -7.940 -0.021 -6.594 -1.441 -1.445 -2.173 1.605 D 79 77 3 80 3 0 6 61 80 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 10 65 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - A - - - ML 81 80 3 83 3 1 10 61 80 -7.940 -0.021 -6.594 1.708 -2.323 -1.960 -1.861 D 82 80 3 83 3 0 5 60 79 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 10 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - G - - - ML 84 83 3 86 3 1 9 60 79 -8.332 -0.019 -6.650 0.152 -1.581 1.035 -0.986 D 85 83 3 86 3 0 5 59 77 -5.620 -0.734 -1.403 IL 86 86 3 86 3 1 8 61 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 73 - G - - MR 87 86 3 89 3 1 9 59 78 -8.332 -0.019 -6.650 -1.529 -2.741 1.712 -2.128 D 88 86 3 89 3 0 3 57 76 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 7 60 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 72 - U - - MR 90 89 3 92 3 1 8 58 77 -8.332 -0.019 -6.650 -1.441 -1.445 -2.173 1.605 D 91 89 3 92 3 0 2 56 75 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 7 59 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 71 - A - - MR 93 92 3 95 3 1 7 57 76 -8.332 -0.019 -6.650 1.708 -2.323 -1.960 -1.861 D 94 92 3 95 3 0 2 55 74 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 6 58 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 70 - U - - MR 96 95 3 98 3 1 7 56 75 -8.332 -0.019 -6.650 -1.441 -1.445 -2.173 1.605 D 97 95 3 98 3 0 1 54 73 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 5 57 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 69 - U - - MR 99 98 3 101 3 1 6 55 74 -8.332 -0.019 -6.650 -1.441 -1.445 -2.173 1.605 D 100 98 3 101 3 0 0 53 72 -6.390 -1.568 -0.620 IR 101 101 3 101 3 1 5 56 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 68 - A - - MR 102 101 3 104 3 1 5 54 73 -8.332 -0.019 -6.650 1.708 -2.323 -1.960 -1.861 D 103 101 3 104 3 0 0 52 71 -6.390 -1.568 -0.620 IR 104 104 3 104 3 1 4 55 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 67 - U - - MR 105 104 3 107 3 1 5 53 72 -8.332 -0.019 -6.650 -1.441 -1.445 -2.173 1.605 D 106 104 3 107 3 0 0 51 70 -6.390 -1.568 -0.620 IR 107 107 3 107 3 1 3 54 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 66 - A - - MR 108 107 3 110 3 1 4 52 71 -8.332 -0.019 -6.650 1.708 -2.323 -1.960 -1.861 D 109 107 3 110 3 0 0 50 69 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 3 53 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 65 - A - - MR 111 110 3 113 3 1 4 51 70 -8.332 -0.019 -6.650 1.708 -2.323 -1.960 -1.861 D 112 110 3 113 3 0 0 49 68 -6.390 -1.568 -0.620 IR 113 113 3 113 3 1 2 52 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 64 - A - - MR 114 113 3 116 3 1 3 50 69 -8.332 -0.019 -6.650 1.010 -1.022 -1.099 0.038 D 115 113 3 116 3 0 0 48 67 -6.390 -1.568 -0.620 IR 116 116 3 116 3 1 2 51 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 39 ] - 63 - A - - MR 117 116 3 119 3 1 3 49 68 -8.332 -0.019 -6.650 1.708 -2.323 -1.960 -1.861 D 118 116 3 119 3 0 0 47 66 -6.390 -1.568 -0.620 IR 119 119 3 119 3 1 1 50 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 40 ] - 62 - G - - MR 120 119 3 122 3 1 2 48 67 -8.332 -0.019 -6.650 -1.529 -2.741 1.712 -2.128 D 121 119 3 122 3 0 0 46 65 -6.390 -1.568 -0.620 IR 122 122 3 122 3 1 1 49 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 41 ] - 61 - G - - MR 123 122 3 125 3 1 2 47 66 -8.332 -0.019 -6.650 -1.529 -2.741 1.712 -2.128 D 124 122 3 125 3 0 0 45 64 -6.390 -1.568 -0.620 IR 125 125 3 125 3 1 1 48 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 42 ] - 60 - A - - MR 126 125 3 128 3 1 2 46 65 -8.332 -0.019 -6.650 1.708 -2.323 -1.960 -1.861 D 127 125 3 128 3 0 0 44 63 -6.390 -1.568 -0.620 IR 128 128 3 128 3 1 1 47 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 43 ] - 59 - G - - MR 129 128 3 131 3 1 1 45 64 -8.332 -0.019 -6.650 -1.529 -2.741 1.712 -2.128 D 130 128 3 131 3 0 0 43 62 -6.390 -1.568 -0.620 IR 131 131 3 131 3 1 1 46 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 44 ] - 58 - G - - MR 132 131 3 134 3 1 1 44 63 -8.332 -0.019 -6.650 -1.529 -2.741 1.712 -2.128 D 133 131 3 134 3 0 0 42 61 -6.390 -1.568 -0.620 IR 134 134 3 134 3 1 1 45 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 45 ] - 57 - A - - MR 135 134 3 137 3 1 1 43 62 -8.332 -0.019 -6.650 1.708 -2.323 -1.960 -1.861 D 136 134 3 137 3 0 0 41 60 -6.390 -1.568 -0.620 IR 137 137 3 137 3 1 1 44 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 46 ] - 56 - C - - MR 138 137 3 140 3 1 1 42 61 -8.332 -0.019 -6.650 -1.178 1.343 -1.998 -0.376 D 139 137 3 140 3 0 0 40 59 -6.390 -1.568 -0.620 IR 140 140 3 140 3 1 1 43 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 47 ] - 55 - A - - MR 141 140 3 143 3 1 1 41 60 -8.332 -0.019 -6.650 1.708 -2.323 -1.960 -1.861 D 142 140 3 143 3 0 0 39 58 -6.390 -1.568 -0.620 IR 143 143 3 143 3 1 1 42 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 48 ] - 54 - G - - MR 144 143 3 146 3 1 1 40 59 -8.332 -0.019 -6.650 -1.529 -2.741 1.712 -2.128 D 145 143 3 146 3 0 0 38 57 -6.390 -1.568 -0.620 IR 146 146 3 146 3 1 1 41 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 49 ] - 53 - A - - MR 147 146 3 149 3 1 1 39 58 -8.332 -0.019 -6.650 1.453 -1.711 -0.927 -1.212 D 148 146 3 149 3 0 0 37 56 -6.390 -1.568 -0.620 IR 149 149 3 149 3 1 1 40 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 50 ] - 52 - C - - MR 150 149 3 152 3 1 1 38 57 -8.332 -0.019 -6.650 -1.683 1.608 -2.505 -1.108 D 151 149 3 152 3 0 0 36 55 -6.390 -1.568 -0.620 IR 152 152 3 152 3 1 1 39 57 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 51 ] - 51 - A - - MR 153 152 3 155 3 1 1 37 56 -8.332 -0.019 -6.650 1.708 -2.323 -1.960 -1.861 D 154 152 3 155 3 0 0 35 54 -6.390 -1.568 -0.620 IR 155 155 3 155 3 1 1 38 56 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 52 ] - 50 - a - - MR 156 155 3 158 3 1 1 36 54 -8.332 -0.019 -6.650 0.869 -0.086 -1.084 -0.397 D 157 155 3 158 3 0 0 34 53 -6.390 -1.568 -0.620 IR 158 158 3 158 3 1 1 37 55 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 53 ] - 49 - A - - MR 159 158 3 161 3 1 1 35 53 -8.332 -0.293 -2.469 1.708 -2.323 -1.960 -1.861 D 160 158 3 161 3 0 0 33 52 -6.390 -1.568 -0.620 IR 161 161 3 161 3 1 1 36 54 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 54 ] - 48 - A - - MR 162 161 3 164 3 1 1 34 53 -8.062 -0.023 -6.380 1.542 -1.751 -1.445 -1.238 D 163 161 3 164 3 0 0 33 51 -7.653 -0.466 -1.883 IR 164 164 3 164 3 1 1 35 53 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 55 ] - 47 - a - - MR 165 164 3 167 3 1 1 33 52 -8.332 -0.019 -6.650 0.369 -0.809 -0.176 0.324 D 166 164 3 167 3 0 0 31 50 -6.390 -1.568 -0.620 IR 167 167 3 167 3 1 1 34 52 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 56 ] - 46 - A - - MR 168 167 3 170 3 1 1 32 51 -8.332 -0.019 -6.650 1.708 -2.323 -1.960 -1.861 D 169 167 3 170 3 0 0 30 49 -6.390 -1.568 -0.620 IR 170 170 3 170 3 1 1 33 51 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 57 ] - 45 - u - - MR 171 170 3 173 3 1 1 31 50 -8.332 -0.019 -6.650 -0.694 0.556 -1.476 0.634 D 172 170 3 173 3 0 0 29 48 -6.390 -1.568 -0.620 IR 173 173 3 173 3 1 1 32 50 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 58 ] - 44 - g - - MR 174 173 3 176 5 1 1 30 49 -7.072 -0.040 -6.888 -7.100 -7.992 0.120 -0.141 0.221 -0.251 D 175 173 3 176 5 0 0 28 47 -5.352 -0.707 -2.978 -4.409 -2.404 IR 176 176 3 176 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 59 ] 29 43 G C - - MP 177 176 3 181 6 2 2 29 48 -9.098 -9.037 -0.021 -7.813 -8.093 -8.488 -3.662 -2.557 -3.683 1.775 -4.142 -4.403 0.325 -3.985 -3.663 3.044 -4.094 -0.188 0.012 -3.742 -1.647 -2.586 ML 178 176 3 181 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 179 176 3 181 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 180 176 3 181 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 181 181 5 181 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 182 182 6 182 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 60 ] 30 42 G C - - MP 183 182 6 187 6 2 2 27 46 -9.098 -9.037 -0.021 -7.813 -8.093 -8.488 -3.662 -2.557 -3.683 1.775 -4.142 -4.403 0.325 -3.985 -3.663 3.044 -4.094 -0.188 0.012 -3.742 -1.647 -2.586 ML 184 182 6 187 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 185 182 6 187 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 186 182 6 187 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 187 187 5 187 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 188 188 6 188 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 61 ] 31 41 g c - - MP 189 188 6 193 6 2 2 25 44 -9.098 -9.037 -0.021 -7.813 -8.093 -8.488 -3.343 -2.399 -3.385 2.182 -3.826 -4.299 0.512 -3.680 -3.408 2.608 -3.880 0.440 0.230 -3.539 -1.417 -2.304 ML 190 188 6 193 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 191 188 6 193 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 192 188 6 193 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 193 193 5 193 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 194 194 6 194 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 62 ] 32 40 c g - - MP 195 194 6 199 6 2 2 23 42 -9.098 -9.037 -0.021 -7.813 -8.093 -8.488 -3.061 -2.907 -3.101 1.541 -2.470 -3.841 2.445 -3.023 -3.119 1.081 -3.598 -0.909 1.320 -3.267 0.279 -2.052 ML 196 194 6 199 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 197 194 6 199 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 198 194 6 199 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 199 199 5 199 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 200 200 6 200 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 33 39 g c - - MP 201 200 6 205 4 2 2 21 40 -6.922 -7.129 -0.054 -5.543 -3.222 -2.541 -3.245 1.035 -3.151 -3.974 1.755 -3.429 -3.331 2.580 -3.775 0.074 0.857 -3.295 -0.768 -2.194 ML 202 200 6 205 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 203 200 6 205 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 204 200 6 205 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 205 205 5 205 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 206 206 6 206 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 34 - a - - - ML 207 206 6 209 3 1 1 18 36 -7.940 -0.021 -6.594 0.953 -1.370 0.139 -0.796 D 208 206 6 209 3 0 0 17 36 -6.174 -1.687 -0.566 IL 209 209 3 209 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 35 - u - - - ML 210 209 3 212 3 1 1 16 35 -7.940 -0.021 -6.594 0.303 -0.119 -1.001 0.429 D 211 209 3 212 3 0 0 16 34 -6.174 -1.687 -0.566 IL 212 212 3 212 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 36 - u - - - ML 213 212 3 215 3 1 1 15 33 -7.940 -0.021 -6.594 0.265 -0.821 -1.107 0.822 D 214 212 3 215 3 0 0 15 33 -6.174 -1.687 -0.566 IL 215 215 3 215 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 37 - G - - - ML 216 215 3 218 3 1 1 13 31 -7.940 -0.021 -6.594 -1.529 -2.741 1.712 -2.128 D 217 215 3 218 3 0 0 13 32 -6.174 -1.687 -0.566 IL 218 218 3 218 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 38 - u - - - ML 219 218 3 221 2 1 1 1 1 * 0.000 -0.387 -0.871 -0.050 0.784 D 220 218 3 221 2 0 0 0 0 * 0.000 IL 221 221 3 221 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 69 ] - - - - - - E 222 221 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Clostridium-PBP ACC RF03091 DESC Clostridium-PBP RNA LENG 73 MAXL 160 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Jul 5 09:38:22 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03091/CM NSEQ 11 EFFN 2.129639 CKSUM 644031293 STATS LOCAL MSV -8.6866 0.71872 STATS LOCAL VITERBI -9.2518 0.71872 STATS LOCAL FORWARD -3.3518 0.71872 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 0.97250 1.93149 1.43020 1.43687 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 0.00000 * 1 0.17368 3.13447 2.86890 2.82764 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 2 0.17368 3.13447 2.86890 2.82764 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 3 0.17368 3.13446 2.86890 2.82764 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 4 0.17368 3.13446 2.86890 2.82764 4 A - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 5 0.59079 2.42945 1.47391 2.04799 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 6 2.59161 3.45403 0.16825 3.02944 6 G - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 7 2.51224 2.49296 3.02543 0.23862 7 U - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 8 2.59161 3.45403 0.16825 3.02944 8 G - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 9 1.33281 0.80696 2.33868 1.64197 9 c - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 10 2.51224 2.49296 3.02543 0.23862 10 U - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 11 0.17368 3.13447 2.86890 2.82764 11 A - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 12 2.51224 2.49296 3.02543 0.23862 12 U - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 13 0.17368 3.13446 2.86890 2.82764 13 A - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 14 2.59161 3.45403 0.16825 3.02944 14 G - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 15 2.51224 2.49296 3.02543 0.23862 15 U - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 16 0.17368 3.13447 2.86890 2.82764 16 A - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 17 0.17368 3.13447 2.86890 2.82764 17 A - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 18 1.93311 1.27015 2.46523 0.71432 18 u - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 19 1.95375 0.84123 2.51096 1.06164 19 c - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 20 0.17368 3.13447 2.86890 2.82764 20 A - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 21 0.17368 3.13447 2.86890 2.82764 21 A - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 22 0.63932 1.63136 2.21287 1.78795 22 A - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 23 2.59161 3.45403 0.16825 3.02944 23 G - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 24 2.51224 2.49296 3.02543 0.23862 24 U - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 25 2.51224 2.49296 3.02543 0.23862 25 U - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 26 2.51224 2.49296 3.02543 0.23862 26 U - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 27 0.17368 3.13447 2.86890 2.82764 27 A - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 28 1.29160 2.55415 0.63412 2.14554 28 G - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 29 1.42876 2.48692 0.53789 2.37246 29 G - - < 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 30 1.42915 2.48839 0.53719 2.37457 30 G - - < 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 31 1.14657 2.34812 0.73901 2.21513 31 g - - < 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 32 1.55986 0.99592 1.77443 1.38281 32 c - - < 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 33 1.89003 1.47895 0.78498 1.80227 33 g - - < 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 34 0.70423 2.39623 1.27536 2.00158 34 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 35 1.17256 1.46063 2.10856 1.08790 35 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 36 1.20241 1.99182 2.19327 0.79511 36 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 37 2.59161 3.45403 0.16825 3.02944 37 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 38 1.69142 2.02778 1.41125 0.82035 38 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 39 2.03806 0.91612 1.35563 1.55180 39 c - - > 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 40 1.71633 1.93666 0.83186 1.42356 40 g - - > 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 41 2.45071 0.91006 2.15964 0.92659 41 c - - > 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 42 2.61377 0.61387 2.30580 1.25243 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 43 2.61563 0.61351 2.30646 1.25240 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 44 1.31404 1.47432 1.20904 1.59038 44 g - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 45 1.92401 0.97138 2.47307 0.93880 45 u - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 46 0.17368 3.13447 2.86890 2.82764 46 A - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 47 1.12671 1.97204 1.50219 1.15808 47 a - - : 1.38629 1.38629 1.38629 1.38629 0.28376 3.93348 1.48071 1.46634 0.26236 1.09861 0.40547 48 0.28192 2.70225 2.48000 2.35529 48 A - - : 1.38629 1.38629 1.38629 1.38629 0.05069 3.70041 3.70041 1.46634 0.26236 0.15881 1.91843 49 0.17368 3.13447 2.86890 2.82764 49 A - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 50 0.76060 1.43455 2.18433 1.70465 50 a - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 51 0.17368 3.13447 2.86890 2.82764 51 A - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 52 2.71922 0.22890 3.29349 2.28728 52 C - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 53 0.35093 2.65396 2.06313 2.31732 53 A - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 54 2.59161 3.45403 0.16825 3.02944 54 G - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 55 0.17368 3.13447 2.86890 2.82764 55 A - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 56 2.30946 0.41153 2.88565 1.70246 56 C - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 57 0.17368 3.13447 2.86890 2.82764 57 A - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 58 2.59161 3.45403 0.16825 3.02944 58 G - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 59 2.59161 3.45403 0.16825 3.02944 59 G - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 60 0.17368 3.13447 2.86890 2.82764 60 A - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 61 2.59161 3.45403 0.16825 3.02944 61 G - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 62 2.59161 3.45403 0.16825 3.02944 62 G - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 63 0.17368 3.13447 2.86890 2.82764 63 A - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 64 0.66333 2.13363 2.19159 1.36759 64 A - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 65 0.17368 3.13447 2.86890 2.82764 65 A - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 66 0.17368 3.13447 2.86890 2.82764 66 A - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 67 2.51224 2.49296 3.02543 0.23862 67 U - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 68 0.17368 3.13447 2.86890 2.82764 68 A - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 69 2.51224 2.49296 3.02543 0.23862 69 U - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 70 2.51224 2.49296 3.02543 0.23862 70 U - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 71 0.17368 3.13447 2.86890 2.82764 71 A - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 72 2.51224 2.49296 3.02543 0.23862 72 U - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93348 3.93348 1.46634 0.26236 1.09861 0.40547 73 2.59161 3.45403 0.16825 3.02944 73 G - - : 1.38629 1.38629 1.38629 1.38629 0.02017 3.91371 * 1.46634 0.26236 0.00000 * //