# STOCKHOLM 1.0
#=GF ID Parabacteroides-1
#=GF AC RF03088
#=GF DE Parabacteroides-1 RNA
#=GF AU Weinberg Z; 0000-0002-6681-3624
#=GF GA 93.4
#=GF NC 92.3
#=GF TC 105.8
#=GF SE Weinberg Z
#=GF SS Published; PMID:28977401;
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 25.60 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 28977401
#=GF RT Detection of 224 candidate structured RNAs by comparative analysis of
#=GF RT specific subsets of intergenic regions.
#=GF RA Weinberg Z, Lunse CE, Corbino KA, Ames TD, Nelson JW, Roth A, Perkins KR,
#=GF RA Sherlock ME, Breaker RR
#=GF RL Nucleic Acids Res. 2017;45:10811-10823.
#=GF CC Parabacteroides (Bacteroidetes). Big IGRs
#=GF WK Parabacteroides-1_RNA_motif
#=GF SQ 15

URS0000D6CD6D_12908/1-108  GAAAGAGCCGUUGGAUGAUACGCAACACUUGAGGGUUGCUCCUCUCCAAGAUCAUUCUUACGAGAAUG-ACAUAAGAAUUGUUGGGAGUUAAUACAAUUCGACUCUUUU
URS0000D6CD6D_563193/1-108 GAAAGAGCCGUUGGAUGAUACGCAACACUUGAGGGUUGCUCCUCUCCAAGAUCAUUCUUACGAGAAUG-ACAUAAGAAUUGUUGGGAGUUAAUACAAUUCGACUCUUUU
URS0000D65843_12908/1-105  AAAAGGAACAUUGAG-GAUAGGCAACAG--GAG-GUUGCGCCUUCUCAAGAUGACCCUUACGAGGGUUCACAGAAGAACUACAAGGUAAGAAUGUAGUUUGGUCUUUUC
URS0000D673A4_435591/1-105 AAAAGGAACAUUGAG-AAUAGGCAACAG--GAG-GUUGCGCCUUCUCAAGAUGAUCCUUACGAGGGUUCACAGAAGAACUACAAGGUAAGAAUGUAGUUUGGUCCUUUU
URS0000D673A4_12908/1-105  AAAAGGAACAUUGAG-AAUAGGCAACAG--GAG-GUUGCGCCUUCUCAAGAUGAUCCUUACGAGGGUUCACAGAAGAACUACAAGGUAAGAAUGUAGUUUGGUCCUUUU
URS0000D66A2D_12908/1-105  AAAAGGAACAUUGAG-AAUAGGCAAUAG--GAG-GUUGCGCCUUCUCAAGAUGACCCUUACGAGGGUUCACGGAAGAACUACAAGGUAAGAAUGUAGUUUGGUCCUUUU
URS0000D6B101_12908/1-105  AAAAGGAACAUUGAG-AAUAGGCAACAG--GAG-GUUGCACCUUCUCAAGAUGACCCUUACGAGGGUUCACGGAAGAACUACAAGGUAAGAAUAUAGUUUGGUCCUUUU
URS0000D6B101_563193/1-105 AAAAGGAACAUUGAG-AAUAGGCAACAG--GAG-GUUGCACCUUCUCAAGAUGACCCUUACGAGGGUUCACGGAAGAACUACAAGGUAAGAAUAUAGUUUGGUCCUUUU
URS0000D6BD01_12908/1-105  AAAGAGAACAUUGAGAGAUAA-CAGAAU--UAG-UCUGACCCUUCUCAAGAUGAUUCUUACGAGAAUUCACAGAAGAGUUGCAAGGGCAGAAUGUAACUUGGUCUCUUU
URS0000D68F55_12908/1-105  AAAGAGAACAUUGAGAGAUAA-CAGAAU--UAG-UCUGACCCUUCUCAAGAUGAUUCUUACGAGAAUUCACAGAAGAGUUACAAGGGCAGAAUGUAACUUGGUCUCUUU
URS0000D691C0_12908/1-105  AAAGAGAACAUUGAGAGAUAA-CAGAAU--UAG-GCUGACCCUUCUCAAGAUGAUUCUUACGAGAAUUCACAGAAGAGUUACAAGGGCAGAAUGUAACUUGAUCUCUUU
URS0000D69A6F_12908/1-105  AAAGAGAACAUUGAG-AAUAGUCAAUAG--AAG-AUUGAUCCUUCUCAAGAUGAUUCUUACGAGAAUUCACAGAAGAGUUGUUGGGAAUGAAAAUAACUUGAUCUCUUU
URS0000D6ABD3_12908/1-105  AAAGAGAACAUUGAG-AAUAGUCAAUGG--AAG-AUUGAUCCUUCUCAAGAUGAUUCUUACGAGAAUUCACAGAAGAGUUGUUGGGAAUGAAAAUAACUUGGUCUCUUU
URS0000D65CB6_12908/1-105  AAAGAGAACAUUGAG-AAUAGUCAAUGG--AAG-AUUGAUCCCUCUCAAGAUGAUUCUUACGAGAAUUCACAGAAGAGUUGUUGGGAAUGAAAAUAACUUGGUCUCUUU
URS0000D6675B_12908/1-105  AAAGAGAACAUUGAG-AAUAGUCAACAA---AGGGUUGAUCCCUCUCAAGAUGGUUCUUACGAGAAUUCACAGAAGAGUUGUUGGGAAUGAAGACAACUUGGUCUCUUU
#=GC SS_cons               :((((((-((<<<<<.<<---<<<<<__..___.>>>>>--->>>>>>>,,,<<<<<<____>>>>>>,,,,,,,,<<<<<<<_________>>>>>>>))-)))))):
#=GC RF                    AaaggGaACauuGaG.gaUAggCaacAg..gAG.guuGcuCCucCuCaaGAUgaccCuUACGaGggucCACAgAAGagcugccaGGaaagAAggcagcuuGguCccuuU
//
