INFERNAL1/a [1.1.5 | Sep 2023] NAME chrB-b ACC RF03086 DESC chrB-b RNA STATES 156 NODES 44 CLEN 49 W 143 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 10 12:40:46 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03086/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 313 EFFN 48.318802 CKSUM 1912585641 NULL 0.000 0.000 0.000 0.000 GA 36.50 TC 36.60 NC 36.30 EFP7GF -24.8512 0.72021 ECMLC 0.64374 -9.23682 0.79236 1600000 763988 0.001571 ECMGC 0.33148 -23.53833 -7.44980 1600000 82820 0.004830 ECMLI 0.57733 -9.66726 1.32299 1600000 683583 0.001755 ECMGI 0.33858 -20.86519 -5.63217 1600000 69500 0.005755 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 143 255 -10.576 -11.821 -0.044 -5.116 IL 1 1 2 1 4 4 23 144 256 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 5 24 144 257 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 128 - C - - MR 3 2 3 5 3 6 23 143 255 -11.954 -0.002 -10.271 -4.275 1.858 -2.494 -2.773 D 4 2 3 5 3 2 20 142 254 -8.254 -0.290 -2.484 IR 5 5 3 5 3 4 22 143 255 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 127 - G - - MR 6 5 3 8 3 5 22 142 254 -11.991 -0.005 -8.244 -6.190 -4.375 1.974 -6.899 D 7 5 3 8 3 1 19 140 252 -6.390 -1.568 -0.620 IR 8 8 3 8 3 3 21 142 255 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 126 - U - - MR 9 8 3 11 3 4 21 141 253 -11.987 -0.001 -10.305 -4.565 -1.269 -3.158 1.779 D 10 8 3 11 3 0 18 139 251 -6.724 -1.077 -0.953 IR 11 11 3 11 3 3 21 141 254 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 125 - C - - MR 12 11 3 14 3 3 20 140 252 -11.991 -0.007 -7.732 -5.666 1.903 -4.495 -2.350 D 13 11 3 14 3 0 17 138 250 -6.390 -1.568 -0.620 IR 14 14 3 14 3 2 20 140 253 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 124 - u - - MR 15 14 3 17 3 2 19 139 251 -7.063 -0.097 -4.117 -1.185 -0.992 0.434 0.771 D 16 14 3 17 3 0 17 137 250 -6.881 -0.920 -1.111 IR 17 17 3 17 3 2 19 139 252 -2.295 -0.409 -4.534 0.000 0.000 0.000 0.000 [ MATR 6 ] - 122 - C - - MR 18 17 3 20 3 3 18 138 250 -11.907 -0.002 -10.224 -2.640 1.351 -2.312 0.120 D 19 17 3 20 3 0 16 137 249 -9.170 -0.146 -3.400 IR 20 20 3 20 3 1 18 138 251 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 121 - G - - MR 21 20 3 23 3 3 17 137 249 -11.991 -0.001 -10.308 -3.210 -6.880 1.936 -4.118 D 22 20 3 23 3 0 14 135 247 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 17 137 250 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 120 - A - - MR 24 23 3 26 3 3 16 136 248 -11.991 -0.001 -10.308 1.993 -7.821 -7.103 -7.244 D 25 23 3 26 3 0 14 134 246 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 16 136 249 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 119 - A - - MR 27 26 3 29 3 2 15 135 247 -11.991 -0.001 -10.308 1.976 -4.488 -6.563 -6.511 D 28 26 3 29 3 0 13 133 246 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 15 135 248 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 118 - C - - MR 30 29 3 32 2 1 14 134 246 -5.674 -0.029 -6.545 1.965 -6.923 -3.708 D 31 29 3 32 2 0 13 133 245 -4.432 -0.068 IR 32 32 3 32 2 1 14 134 246 -2.842 -0.217 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 33 32 3 34 102 0 13 133 245 [ BEGL 12 ] - - - - - - S 34 33 1 35 4 0 0 38 57 -0.013 -7.790 -8.141 -9.817 [ MATP 13 ] 1 29 c g - - MP 35 34 1 39 6 2 2 38 57 -11.692 -11.631 -0.003 -10.408 -10.687 -11.082 -2.876 -3.342 -2.028 0.398 -0.076 -2.756 2.529 -2.482 -2.091 -0.051 -2.717 -1.437 0.763 -2.719 1.622 -0.981 ML 36 34 1 39 6 1 1 37 56 -6.583 -6.929 -0.927 -1.338 -6.779 -4.308 0.035 -0.008 -0.641 0.422 MR 37 34 1 39 6 1 1 36 56 -7.153 -5.882 -1.332 -5.860 -0.994 -4.073 0.256 -0.624 0.316 -0.133 D 38 34 1 39 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 39 39 5 39 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 40 40 6 40 5 1 1 37 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 2 28 G C - - MP 41 40 6 45 6 2 2 36 55 -11.699 -7.866 -0.012 -8.491 -10.694 -11.090 -7.832 -6.241 -7.874 -2.839 -7.894 -8.023 2.756 -7.840 -7.359 3.105 -3.507 -1.872 -3.934 -7.838 -5.377 -6.644 ML 42 40 6 45 6 1 1 34 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 43 40 6 45 6 1 1 34 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 44 40 6 45 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 45 45 5 45 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 46 46 6 46 5 1 1 35 55 -2.601 -0.424 -6.112 -4.280 -5.385 0.000 0.000 0.000 0.000 [ MATP 15 ] 3 26 G C - - MP 47 46 6 51 6 2 2 34 53 -11.696 -11.635 -0.003 -10.412 -10.692 -11.087 -9.537 -6.279 -11.332 -3.719 -10.661 -7.452 -1.523 -10.863 -7.629 3.951 -7.829 -4.199 -5.766 -7.908 -7.676 -10.287 ML 48 46 6 51 6 1 1 33 52 -6.469 -6.815 -1.037 -1.224 -6.665 -4.195 0.229 -0.648 0.364 -0.149 MR 49 46 6 51 6 1 1 32 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 50 46 6 51 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 51 51 5 51 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 52 52 6 52 5 1 1 33 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 4 25 G C - - MP 53 52 6 57 6 2 2 32 51 -11.699 -11.638 -0.006 -8.502 -10.694 -11.090 -9.541 -6.264 -11.492 -3.700 -11.214 -7.457 -5.558 -11.098 -7.626 3.965 -7.829 -2.147 -5.911 -7.912 -7.988 -10.422 ML 54 52 6 57 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 55 52 6 57 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 56 52 6 57 6 0 0 28 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 57 57 5 57 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 58 58 6 58 5 1 1 31 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 5 24 G C - - MP 59 58 6 63 6 2 2 30 49 -11.696 -11.635 -0.014 -6.991 -10.692 -11.087 -9.580 -2.864 -11.657 -3.711 -11.191 -7.424 -5.522 -11.266 -7.623 3.930 -7.817 -1.818 -5.882 -2.327 -7.955 -10.702 ML 60 58 6 63 6 1 1 29 49 -6.467 -6.813 -1.039 -1.222 -6.663 -4.192 0.231 -0.646 0.361 -0.147 MR 61 58 6 63 6 1 1 29 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 62 58 6 63 6 0 0 27 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 63 63 5 63 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 64 64 6 64 5 1 1 29 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 6 23 a u - - MP 65 64 6 69 4 2 2 28 47 -10.762 -10.969 -0.004 -9.383 -3.191 -2.480 -3.093 2.666 -3.368 -4.239 1.545 -3.212 -3.454 0.143 -3.231 0.584 1.177 -2.489 -1.393 -1.159 ML 66 64 6 69 4 1 1 28 48 -4.269 -4.451 -0.336 -3.181 -0.113 -1.029 0.892 -0.454 MR 67 64 6 69 4 1 1 28 48 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 68 64 6 69 4 0 0 27 47 -4.568 -4.250 -2.265 -0.520 IL 69 69 5 69 4 1 1 30 50 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 70 70 6 70 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 7 - c - - - ML 71 70 6 73 3 1 1 26 45 -11.690 -0.035 -5.386 -0.192 0.838 -4.500 0.371 D 72 70 6 73 3 0 0 24 44 -6.174 -1.687 -0.566 IL 73 73 3 73 3 1 1 28 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 8 - a - - - ML 74 73 3 76 3 1 1 25 44 -11.656 -0.152 -3.328 0.688 -0.426 -0.427 -0.151 D 75 73 3 76 3 0 0 22 42 -8.112 -3.625 -0.128 IL 76 76 3 76 3 1 1 27 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 9 - u - - - ML 77 76 3 79 3 1 1 24 43 -11.506 -0.441 -1.926 0.344 -0.235 -0.793 0.383 D 78 76 3 79 3 0 0 20 39 -10.141 -5.654 -0.030 IL 79 79 3 79 3 1 1 26 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 10 - c - - - ML 80 79 3 82 3 1 1 23 43 -1.598 -0.581 -9.722 0.350 0.691 -1.642 -0.338 D 81 79 3 82 3 0 0 17 35 -11.630 -0.023 -6.022 IL 82 82 3 82 3 1 1 23 43 -1.378 -0.712 -7.693 0.000 0.000 0.000 0.000 [ MATL 23 ] 15 - G - - - ML 83 82 3 85 3 1 1 17 35 -11.690 -0.002 -10.344 -2.225 -4.104 1.863 -3.452 D 84 82 3 85 3 0 0 18 36 -6.174 -1.687 -0.566 IL 85 85 3 85 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 16 - C - - - ML 86 85 3 88 3 1 1 16 33 -11.690 -0.002 -10.344 -6.568 1.969 -6.945 -3.921 D 87 85 3 88 3 0 0 17 35 -6.174 -1.687 -0.566 IL 88 88 3 88 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 17 - A - - - ML 89 88 3 91 3 1 1 15 32 -11.690 -0.002 -10.344 1.753 -3.210 -1.017 -5.170 D 90 88 3 91 3 0 0 16 34 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 18 - G - - - ML 92 91 3 94 3 1 1 14 31 -11.690 -0.002 -10.344 -2.890 -4.206 1.923 -5.794 D 93 91 3 94 3 0 0 14 33 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 19 - a - - - ML 95 94 3 97 3 1 1 13 29 -6.706 -0.020 -7.806 0.475 0.206 0.024 -1.187 D 96 94 3 97 3 0 0 12 28 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 16 32 -1.633 -0.653 -4.578 0.000 0.000 0.000 0.000 [ MATL 28 ] 22 - C - - - ML 98 97 3 100 2 1 1 1 1 * 0.000 -4.290 1.914 -6.162 -2.584 D 99 97 3 100 2 0 0 0 0 * 0.000 IL 100 100 3 100 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 29 ] - - - - - - E 101 100 3 -1 0 0 0 0 0 [ BEGR 30 ] - - - - - - S 102 33 1 103 3 0 0 111 223 -1.105 -0.910 -8.444 IL 103 103 2 103 3 1 1 116 228 -0.237 -2.730 -10.765 0.000 0.000 0.000 0.000 [ MATL 31 ] 91 - u - - - ML 104 103 2 106 3 1 1 31 48 -11.687 -0.002 -10.341 -0.962 0.383 -2.183 0.973 D 105 103 2 106 3 0 0 31 49 -6.504 -1.147 -0.896 IL 106 106 3 106 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 92 - c - - - ML 107 106 3 109 3 1 1 30 47 -11.690 -0.002 -10.344 0.403 0.774 -1.393 -0.767 D 108 106 3 109 3 0 0 30 48 -6.174 -1.687 -0.566 IL 109 109 3 109 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 93 - A - - - ML 110 109 3 112 5 1 1 29 46 -10.639 -0.003 -10.454 -10.666 -11.558 1.897 -3.417 -3.403 -3.503 D 111 109 3 112 5 0 0 28 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 112 112 3 112 5 1 1 30 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 94 116 G C - - MP 113 112 3 117 6 2 2 28 45 -11.699 -11.638 -0.013 -7.122 -10.694 -11.090 -6.168 -2.897 -0.977 0.373 -7.230 -6.741 -2.313 -2.860 -6.351 3.683 -6.658 -0.847 -2.564 -5.971 -4.314 -4.954 ML 114 112 3 117 6 1 1 27 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 115 112 3 117 6 1 1 27 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 116 112 3 117 6 0 0 25 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 117 117 5 117 6 1 1 28 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 118 118 6 118 5 1 1 28 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 95 115 A U - - MP 119 118 6 123 6 2 2 26 43 -11.690 -11.629 -0.004 -10.405 -10.685 -11.080 -7.524 -6.183 -7.697 3.576 -9.737 -10.529 -5.138 -2.836 -7.303 1.573 -7.953 -0.465 -5.115 -8.839 -6.997 -2.949 ML 120 118 6 123 6 1 1 25 41 -6.851 -7.197 -1.911 -0.580 -7.047 -4.576 1.069 -0.939 -0.685 -0.397 MR 121 118 6 123 6 1 1 25 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 122 118 6 123 6 0 0 23 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 123 123 5 123 6 1 1 26 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 124 124 6 124 5 1 1 26 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 96 114 C G - - MP 125 124 6 129 6 2 2 24 41 -11.690 -11.629 -0.133 -10.405 -10.685 -3.537 -7.842 -7.808 -7.455 -0.382 -5.979 -7.825 3.563 -4.427 -7.461 -3.621 -7.732 -5.660 1.576 -7.837 -2.159 -6.228 ML 126 124 6 129 6 1 1 23 40 -6.851 -7.197 -0.722 -1.606 -7.047 -4.576 1.069 -0.939 -0.685 -0.397 MR 127 124 6 129 6 1 1 23 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 128 124 6 129 6 0 0 21 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 129 129 5 129 6 1 1 24 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 130 130 6 130 5 1 1 24 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 97 113 G C - - MP 131 130 6 135 6 2 2 23 39 -11.571 -11.510 -0.218 -10.286 -7.047 -2.929 -6.085 -1.684 -5.936 -0.375 -7.059 -6.363 -0.321 -6.606 -6.214 3.713 -6.464 -1.373 -2.381 -5.724 -1.801 -4.896 ML 132 130 6 135 6 1 1 21 38 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 133 130 6 135 6 1 1 21 38 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 134 130 6 135 6 0 0 18 34 -12.325 -11.024 -6.821 -7.503 -7.520 -0.030 IL 135 135 5 135 6 1 1 23 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 136 136 6 136 5 1 1 22 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 98 112 G C - - MP 137 136 6 141 4 2 2 21 37 -3.843 -2.113 -0.520 -9.007 -5.478 -4.117 -5.298 0.701 -6.412 -5.893 0.968 -5.981 -5.729 3.366 -4.065 0.245 -1.750 -5.153 -1.660 -4.262 ML 138 136 6 141 4 1 1 20 36 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 139 136 6 141 4 1 1 19 36 -5.401 -1.386 -2.297 -1.358 1.062 -0.932 -0.677 -0.390 D 140 136 6 141 4 0 0 17 34 -8.928 -1.216 -0.906 -4.880 IL 141 141 5 141 4 1 1 21 37 -1.719 -0.715 -3.624 -7.362 0.000 0.000 0.000 0.000 IR 142 142 6 142 3 1 1 18 35 -1.713 -0.532 -8.124 0.000 0.000 0.000 0.000 [ MATL 39 ] 101 - u - - - ML 143 142 6 145 3 1 1 13 32 -11.690 -0.002 -10.344 -0.360 0.359 -1.268 0.607 D 144 142 6 145 3 0 0 15 34 -6.174 -1.687 -0.566 IL 145 145 3 145 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 102 - u - - - ML 146 145 3 148 3 1 1 12 31 -11.690 -0.007 -7.707 -1.263 0.195 -0.087 0.582 D 147 145 3 148 3 0 0 14 33 -6.174 -1.687 -0.566 IL 148 148 3 148 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 103 - u - - - ML 149 148 3 151 3 1 1 10 29 -11.684 -0.317 -2.345 -0.356 0.087 -0.939 0.709 D 150 148 3 151 3 0 0 13 31 -6.751 -2.264 -0.354 IL 151 151 3 151 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 104 - u - - - ML 152 151 3 154 2 1 1 1 1 * 0.000 -1.188 0.413 -0.541 0.625 D 153 151 3 154 2 0 0 0 0 * 0.000 IL 154 154 3 154 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 43 ] - - - - - - E 155 154 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME chrB-b ACC RF03086 DESC chrB-b RNA LENG 49 MAXL 148 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Jul 10 12:40:46 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03086/CM NSEQ 313 EFFN 313.000000 CKSUM 1912585641 STATS LOCAL MSV -7.4224 0.72021 STATS LOCAL VITERBI -8.0509 0.72021 STATS LOCAL FORWARD -3.5058 0.72021 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.68679 1.04591 1.21397 1.79278 1.38629 1.38629 1.38629 1.38629 0.00263 8.05579 6.07177 1.46634 0.26236 0.00000 * 1 2.56972 0.68730 2.65957 1.04830 1 C - - < 1.38629 1.38629 1.38629 1.38629 0.00064 8.05380 8.05380 1.46634 0.26236 0.24297 1.53385 2 6.49060 0.80751 0.59479 7.08531 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.00063 8.05579 8.05579 1.46634 0.26236 1.09861 0.40547 3 6.50171 3.76025 0.02580 7.27191 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.00063 8.05579 8.05579 1.46634 0.26236 1.09861 0.40547 4 6.67157 7.65663 0.00225 7.57908 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.00063 8.05579 8.05579 1.46634 0.26236 1.09861 0.40547 5 4.58022 7.47790 0.02556 4.23960 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.00063 8.05579 8.05579 1.46634 0.26236 1.09861 0.40547 6 0.73393 1.69719 1.80078 1.76251 6 a - - < 1.38629 1.38629 1.38629 1.38629 0.00063 8.05579 8.05579 1.46634 0.26236 1.09861 0.40547 7 1.50046 0.79668 6.58357 1.12465 7 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02481 8.05579 3.72190 1.46634 0.26236 1.09861 0.40547 8 0.87398 1.68478 1.68243 1.55446 8 a - - _ 1.38629 1.38629 1.38629 1.38629 0.10828 8.03163 2.27982 1.46634 0.26236 4.35979 0.01286 9 1.14130 1.53455 1.98782 1.11460 9 u - - _ 1.38629 1.38629 1.38629 1.38629 0.31793 7.92407 1.30201 1.46634 0.26236 5.97126 0.00255 10 1.11850 0.82829 2.76770 1.75085 10 c - - _ 1.38629 1.38629 1.38629 1.38629 0.42609 1.06003 7.60714 0.48966 0.94891 0.00175 6.34782 11 3.08442 4.69458 0.07338 4.14426 15 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00063 8.05579 8.05579 1.46634 0.26236 1.09861 0.40547 12 7.93504 0.01476 8.21402 4.26708 16 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00063 8.05579 8.05579 1.46634 0.26236 1.09861 0.40547 13 0.15787 3.75899 2.10474 7.06129 17 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00063 8.05579 8.05579 1.46634 0.26236 1.09861 0.40547 14 3.47428 4.40086 0.04471 7.65762 18 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00063 8.05579 8.05579 1.46634 0.26236 1.09861 0.40547 15 1.04161 1.19344 1.33627 2.51192 19 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01412 4.61659 5.48866 0.26184 1.46810 1.09861 0.40547 16 4.59900 0.05295 7.42302 3.19619 22 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00884 8.05197 4.76989 1.46634 0.26236 0.14281 2.01680 17 2.01144 2.74594 1.63406 0.49942 23 U - - > 1.38629 1.38629 1.38629 1.38629 0.00298 8.04763 5.93197 1.46634 0.26236 0.07241 2.66135 18 7.79270 0.01871 7.74543 4.03471 24 C - - > 1.38629 1.38629 1.38629 1.38629 0.00064 8.05348 8.05348 1.46634 0.26236 0.21600 1.63851 19 7.71623 0.01461 7.69638 4.29763 25 C - - > 1.38629 1.38629 1.38629 1.38629 0.00298 8.05579 5.93023 1.46634 0.26236 1.09861 0.40547 20 7.57118 0.02572 3.76112 6.42603 26 C - - > 1.38629 1.38629 1.38629 1.38629 0.00520 5.32504 8.05345 0.12588 2.13467 0.21409 1.64651 21 7.19206 0.63108 0.79477 4.16369 28 C - - > 1.38629 1.38629 1.38629 1.38629 0.00434 8.05579 5.51746 1.46634 0.26236 1.09861 0.40547 22 1.76709 2.96630 0.40616 2.19398 29 G - - > 1.38629 1.38629 1.38629 1.38629 0.66120 0.73131 5.99395 1.92165 0.15825 0.14669 1.99188 23 2.16042 1.10399 3.10115 0.67692 91 U - - - 1.38629 1.38629 1.38629 1.38629 0.00064 8.05362 8.05362 1.46634 0.26236 0.22744 1.59243 24 1.08868 0.79077 2.45522 2.08748 92 c - - - 1.38629 1.38629 1.38629 1.38629 0.00063 8.05579 8.05579 1.46634 0.26236 1.09861 0.40547 25 0.05356 4.03706 3.96568 4.16363 93 A - - - 1.38629 1.38629 1.38629 1.38629 0.00063 8.05579 8.05579 1.46634 0.26236 1.09861 0.40547 26 2.23730 4.63802 0.12448 7.38881 94 G - - < 1.38629 1.38629 1.38629 1.38629 0.00063 8.05579 8.05579 1.46634 0.26236 1.09861 0.40547 27 0.27580 4.68311 1.49854 4.78856 95 A - - < 1.38629 1.38629 1.38629 1.38629 0.00063 8.05579 8.05579 1.46634 0.26236 1.09861 0.40547 28 2.96567 0.28192 7.11999 1.64335 96 C - - < 1.38629 1.38629 1.38629 1.38629 0.10311 8.05579 2.32636 1.46634 0.26236 1.09861 0.40547 29 3.09266 3.12688 0.11411 3.98434 97 G - - < 1.38629 1.38629 1.38629 1.38629 0.17457 7.95339 1.83364 1.46634 0.26236 5.73591 0.00323 30 2.50400 2.03776 0.26845 3.75693 98 G - - < 1.38629 1.38629 1.38629 1.38629 0.07482 2.63569 7.77966 0.36680 1.18075 0.00262 5.94482 31 1.70493 1.09683 2.36303 0.94122 101 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00063 8.05579 8.05579 1.46634 0.26236 1.09861 0.40547 32 2.54947 1.22176 1.40773 0.96111 102 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00479 8.05579 5.41245 1.46634 0.26236 1.09861 0.40547 33 1.71274 1.29533 2.09285 0.86160 103 u - - _ 1.38629 1.38629 1.38629 1.38629 0.22385 8.05164 1.60820 1.46634 0.26236 2.77634 0.06429 34 2.50691 1.05743 1.74641 0.92448 104 u - - _ 1.38629 1.38629 1.38629 1.38629 0.57979 1.13791 2.12447 0.42402 1.06251 0.18516 1.77771 35 4.40829 0.38164 1.88639 1.87427 112 C - - > 1.38629 1.38629 1.38629 1.38629 0.05445 7.91794 2.94442 1.46634 0.26236 0.51779 0.90593 36 6.93696 0.10701 2.79374 3.23602 113 C - - > 1.38629 1.38629 1.38629 1.38629 0.00890 7.95339 4.76626 1.46634 0.26236 0.00648 5.04276 37 1.69042 7.68750 0.26608 3.02157 114 G - - > 1.38629 1.38629 1.38629 1.38629 0.00064 8.04840 8.04840 1.46634 0.26236 3.26648 0.03889 38 7.69833 1.69808 7.72108 0.20326 115 U - - > 1.38629 1.38629 1.38629 1.38629 0.00064 8.04840 8.04840 1.46634 0.26236 0.07935 2.57333 39 7.54022 0.14768 3.31839 2.29714 116 C - - > 1.38629 1.38629 1.38629 1.38629 0.02059 3.90888 8.05579 0.03133 3.47875 1.09861 0.40547 40 7.92535 0.01766 8.20319 4.08223 118 C - - : 1.38629 1.38629 1.38629 1.38629 0.00063 8.05579 8.05579 1.46634 0.26236 1.09861 0.40547 41 0.01261 4.43813 7.93434 7.93308 119 A - - : 1.38629 1.38629 1.38629 1.38629 0.00063 8.05579 8.05579 1.46634 0.26236 1.09861 0.40547 42 0.00083 8.54426 8.01444 8.08599 120 A - - : 1.38629 1.38629 1.38629 1.38629 0.00063 8.05579 8.05579 1.46634 0.26236 1.09861 0.40547 43 3.67919 8.35539 0.03920 4.34583 121 G - - : 1.38629 1.38629 1.38629 1.38629 0.06119 8.05579 2.82964 1.46634 0.26236 1.09861 0.40547 44 3.62243 0.42108 3.04078 1.31250 122 C - - : 1.38629 1.38629 1.38629 1.38629 0.01301 4.79475 5.37073 0.07958 2.57053 0.01069 4.54370 45 2.48488 2.14602 1.03074 0.81425 124 u - - : 1.38629 1.38629 1.38629 1.38629 0.00064 8.05172 8.05172 1.46634 0.26236 0.13536 2.06676 46 7.16167 0.06147 4.67994 3.00459 125 C - - : 1.38629 1.38629 1.38629 1.38629 0.00324 8.05579 5.83608 1.46634 0.26236 1.09861 0.40547 47 6.34044 2.25454 3.67535 0.14159 126 U - - : 1.38629 1.38629 1.38629 1.38629 0.00064 8.05319 8.05319 1.46634 0.26236 0.19662 1.72319 48 7.55110 4.37970 0.01346 8.05382 127 G - - : 1.38629 1.38629 1.38629 1.38629 0.00065 8.02901 8.02901 1.46634 0.26236 1.09861 0.40547 49 4.73378 0.09321 3.04241 3.42710 128 C - - : 1.38629 1.38629 1.38629 1.38629 0.00033 8.02868 * 1.46634 0.26236 0.00000 * //