INFERNAL1/a [1.1.4 | Dec 2020] NAME DUF2815 ACC RF03084 DESC DUF2815 RNA STATES 193 NODES 58 CLEN 63 W 87 ALPH RNA RF no CONS yes MAP yes DATE Mon Oct 1 23:12:37 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmcalibrate --cpu 8 CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 22 EFFN 6.754150 CKSUM 1820122839 NULL 0.000 0.000 0.000 0.000 GA 41.20 TC 41.20 NC 35.80 EFP7GF -13.5096 0.71912 ECMLC 0.58879 -8.56744 2.41326 1600000 771009 0.001556 ECMGC 0.40966 -16.29391 -2.34098 1600000 121470 0.003293 ECMLI 0.59432 -5.40795 4.67886 1600000 481605 0.002492 ECMGI 0.43547 -11.69564 0.61969 1600000 85347 0.004687 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 87 115 -8.193 -8.400 -0.022 -6.814 IL 1 1 2 1 4 1 22 89 118 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 22 89 117 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - a - - - ML 3 2 3 5 3 1 21 87 115 -9.148 -0.009 -7.802 0.660 0.088 -0.758 -0.385 D 4 2 3 5 3 0 18 85 113 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 21 88 116 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 20 86 114 -9.148 -0.009 -7.802 -1.097 -1.868 1.604 -2.189 D 7 5 3 8 3 0 17 84 112 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 20 87 115 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 1 19 85 113 -9.148 -0.009 -7.802 -3.687 -5.145 1.944 -4.425 D 10 8 3 11 3 0 16 83 111 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 19 86 114 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - G - - - ML 12 11 3 14 3 1 18 84 112 -4.315 -0.144 -4.482 -1.873 -2.772 1.557 -0.648 D 13 11 3 14 3 0 16 82 110 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 18 84 113 -1.770 -0.596 -4.470 0.000 0.000 0.000 0.000 [ MATL 5 ] 6 - U - - - ML 15 14 3 17 3 1 17 83 111 -9.089 -0.078 -4.301 -0.941 -1.126 -2.396 1.501 D 16 14 3 17 3 0 15 81 110 -7.059 -0.675 -1.450 IL 17 17 3 17 3 1 17 84 112 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 7 - A - - - ML 18 17 3 20 3 1 16 82 110 -9.083 -0.090 -4.097 1.757 -2.792 -2.813 -1.590 D 19 17 3 20 3 0 14 80 109 -7.122 -0.638 -1.514 IL 20 20 3 20 3 1 17 83 111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 8 - G - - - ML 21 20 3 23 3 1 16 81 109 -9.072 -0.010 -7.726 -3.580 -5.026 1.939 -4.320 D 22 20 3 23 3 0 13 79 108 -7.230 -0.581 -1.622 IL 23 23 3 23 3 1 16 82 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 9 - A - - - ML 24 23 3 26 3 1 15 80 108 -9.148 -0.009 -7.802 1.604 -1.279 -2.404 -1.481 D 25 23 3 26 3 0 12 78 107 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 15 81 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 10 - C - - - ML 27 26 3 29 3 1 14 79 107 -9.485 -0.008 -7.803 -2.600 1.721 -2.422 -1.503 D 28 26 3 29 3 0 11 77 106 -5.620 -0.734 -1.403 IL 29 29 3 29 3 1 13 79 108 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 72 - G - - MR 30 29 3 32 3 1 13 78 106 -9.485 -0.008 -7.803 -3.687 -5.145 1.944 -4.425 D 31 29 3 32 3 0 10 76 104 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 13 78 107 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 71 - U - - MR 33 32 3 35 3 1 12 77 105 -9.485 -0.008 -7.803 -3.624 -3.303 -4.414 1.915 D 34 32 3 35 3 0 9 74 103 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 12 77 106 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 70 - A - - MR 36 35 3 38 3 1 11 76 104 -1.718 -1.515 -1.530 1.944 -4.590 -4.053 -4.308 D 37 35 3 38 3 0 9 73 101 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 14 76 105 -1.210 -0.844 -6.516 0.000 0.000 0.000 0.000 [ MATR 13 ] - 66 - a - - MR 39 38 3 41 3 1 13 73 102 -8.882 -0.013 -7.200 0.760 -0.517 -1.240 0.245 D 40 38 3 41 3 0 8 72 100 -9.245 -1.400 -0.691 IR 41 41 3 41 3 1 12 74 102 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 65 - u - - MR 42 41 3 44 3 1 12 72 101 -9.145 -0.011 -7.463 0.349 -0.277 -0.904 0.451 D 43 41 3 44 3 0 7 71 100 -8.662 -0.640 -1.491 IR 44 44 3 44 3 1 11 73 101 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 64 - u - - MR 45 44 3 47 3 1 11 71 100 -9.398 -0.009 -7.716 0.306 -0.306 -0.638 0.392 D 46 44 3 47 3 0 6 70 99 -7.437 -0.558 -1.667 IR 47 47 3 47 3 1 9 72 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 63 - a - - MR 48 47 3 50 3 1 10 70 99 -9.485 -0.008 -7.803 0.802 -0.790 -1.567 0.423 D 49 47 3 50 3 0 4 68 97 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 8 71 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 62 - A - - MR 51 50 3 53 3 1 10 69 98 -9.485 -0.008 -7.803 1.239 -1.259 -1.360 -0.265 D 52 50 3 53 3 0 4 67 96 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 7 70 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 61 - U - - MR 54 53 3 56 3 1 9 68 97 -9.485 -0.008 -7.803 -0.050 -0.656 -1.788 1.077 D 55 53 3 56 3 0 3 66 95 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 7 69 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 60 - a - - MR 57 56 3 59 3 1 9 67 96 -9.485 -0.008 -7.803 0.695 -0.898 -0.464 0.163 D 58 56 3 59 3 0 3 65 94 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 6 68 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 59 - A - - MR 60 59 3 62 3 1 8 66 95 -9.485 -0.008 -7.803 1.355 -1.532 -0.669 -1.100 D 61 59 3 62 3 0 2 64 93 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 6 67 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 58 - a - - MR 63 62 3 65 3 1 7 65 94 -9.485 -0.008 -7.803 0.970 -1.670 -1.836 0.532 D 64 62 3 65 3 0 1 63 92 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 5 66 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 57 - G - - MR 66 65 3 68 3 1 7 64 93 -9.485 -0.008 -7.803 -3.687 -5.145 1.944 -4.425 D 67 65 3 68 3 0 1 62 91 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 5 65 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 56 - G - - MR 69 68 3 71 3 1 6 63 92 -9.485 -0.008 -7.803 -3.687 -5.145 1.944 -4.425 D 70 68 3 71 3 0 0 61 90 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 4 64 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 55 - A - - MR 72 71 3 74 3 1 6 62 91 -9.485 -0.008 -7.803 1.944 -4.590 -4.053 -4.308 D 73 71 3 74 3 0 0 60 89 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 4 63 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 54 - A - - MR 75 74 3 77 3 1 5 61 90 -9.485 -0.008 -7.803 1.944 -4.590 -4.053 -4.308 D 76 74 3 77 3 0 0 59 88 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 3 62 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 53 - A - - MR 78 77 3 80 3 1 5 60 89 -9.485 -0.008 -7.803 1.285 -0.876 -1.890 -0.418 D 79 77 3 80 3 0 0 58 87 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 3 61 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 52 - A - - MR 81 80 3 83 3 1 4 59 88 -9.485 -0.008 -7.803 1.628 -2.412 -2.510 -0.873 D 82 80 3 83 3 0 0 57 86 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 2 60 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 51 - A - - MR 84 83 3 86 3 1 4 58 87 -9.485 -0.008 -7.803 1.340 -1.811 -1.379 -0.322 D 85 83 3 86 3 0 0 56 85 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 2 59 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 50 - U - - MR 87 86 3 89 3 1 3 57 86 -9.485 -0.008 -7.803 -0.072 -0.824 -1.841 1.140 D 88 86 3 89 3 0 0 55 84 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 1 58 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 49 - u - - MR 90 89 3 92 3 1 3 56 85 -9.485 -0.008 -7.803 -0.660 -1.149 -0.019 0.948 D 91 89 3 92 3 0 0 54 83 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 1 57 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 48 - g - - MR 93 92 3 95 3 1 2 55 84 -9.485 -0.008 -7.803 -0.614 -0.605 0.683 0.115 D 94 92 3 95 3 0 0 53 82 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 1 56 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 47 - a - - MR 96 95 3 98 3 1 1 54 83 -9.485 -0.064 -4.577 0.557 -0.638 -0.490 0.232 D 97 95 3 98 3 0 0 52 81 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 1 55 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 46 - A - - MR 99 98 3 101 3 1 2 53 82 -9.430 -0.009 -7.748 1.372 -0.449 -2.087 -1.175 D 100 98 3 101 3 0 0 51 79 -7.141 -2.318 -0.336 IR 101 101 3 101 3 1 1 54 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 45 - A - - MR 102 101 3 104 3 1 1 52 81 -9.430 -0.198 -2.978 1.184 -1.742 -1.885 0.213 D 103 101 3 104 3 0 0 50 78 -7.141 -2.318 -0.336 IR 104 104 3 104 3 1 1 53 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 44 - u - - MR 105 104 3 107 3 1 1 52 80 -9.242 -0.457 -1.889 0.132 -0.467 -1.517 0.873 D 106 104 3 107 3 0 0 48 76 -8.327 -3.505 -0.138 IR 107 107 3 107 3 1 1 53 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 43 - u - - MR 108 107 3 110 5 1 1 51 80 -1.788 -0.632 -4.134 -7.539 -8.431 0.578 -1.094 -1.317 0.712 D 109 107 3 110 5 0 0 44 72 -7.637 -0.120 -5.263 -6.694 -4.688 IR 110 110 3 110 5 1 1 52 81 -0.931 -1.670 -7.900 -2.737 -7.174 0.000 0.000 0.000 0.000 [ MATP 37 ] 11 38 G C - - MP 111 110 3 115 6 2 2 41 59 -9.594 -9.534 -0.015 -8.310 -8.590 -8.985 -4.966 -3.352 -4.974 1.430 -6.059 -5.190 -1.184 -5.428 -4.751 3.521 -5.089 -0.977 -1.448 -4.750 -3.211 -3.849 ML 112 110 3 115 6 1 1 39 58 -6.760 -7.107 -0.783 -1.515 -6.956 -4.486 1.001 -0.868 -0.611 -0.330 MR 113 110 3 115 6 1 1 39 58 -8.012 -6.741 -1.138 -6.719 -1.028 -4.933 1.395 -1.417 -1.141 -0.883 D 114 110 3 115 6 0 0 37 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 12 37 a u - - MP 117 116 6 121 6 2 2 39 57 -9.678 -9.617 -0.014 -8.394 -8.674 -9.069 -4.269 -3.079 -4.226 2.830 -5.014 -5.134 -0.389 -4.616 -4.345 2.508 -4.763 -0.642 0.039 -4.343 -2.370 -3.109 ML 118 116 6 121 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 37 56 -7.508 -6.237 -0.919 -6.215 -1.349 -4.429 -0.167 0.620 -0.878 0.040 D 120 116 6 121 6 0 0 35 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 13 36 a u - - MP 123 122 6 127 6 2 2 37 55 -9.714 -9.653 -0.014 -8.430 -8.710 -9.105 -3.144 -2.710 -3.221 2.071 -3.270 -4.006 0.754 -3.528 -3.347 1.889 -3.828 1.123 0.940 -3.288 0.278 -2.294 ML 124 122 6 127 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 14 35 c g - - MP 129 128 6 133 6 2 2 35 53 -9.714 -9.653 -0.014 -8.430 -8.710 -9.105 -3.985 -3.812 -4.015 0.524 -3.071 -4.824 2.754 -3.694 -3.934 0.805 -4.444 -1.570 2.049 -4.196 -0.235 -2.751 ML 130 128 6 133 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 15 34 u a - - MP 135 134 6 139 6 2 2 33 51 -9.714 -9.653 -0.014 -8.430 -8.710 -9.105 -4.444 -4.304 -4.373 0.551 -3.277 -5.048 2.440 -3.967 -4.319 -0.155 -4.761 -2.091 2.775 -4.611 -0.867 -3.131 ML 136 134 6 139 6 1 1 32 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 16 33 G C - - MP 141 140 6 145 6 2 2 31 49 -9.714 -9.653 -0.014 -8.430 -8.710 -9.105 -4.982 -3.420 -4.975 1.771 -6.129 -5.342 -1.251 -5.432 -4.824 3.437 -5.176 -1.020 -1.505 -4.832 -3.269 -3.843 ML 142 140 6 145 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 17 32 G C - - MP 147 146 6 151 4 2 2 29 47 -8.193 -8.400 -0.022 -6.814 -4.562 -3.138 -4.482 1.654 -5.645 -5.083 -0.773 -5.020 -4.598 3.266 -4.937 0.600 -1.021 -4.411 -2.775 -3.383 ML 148 146 6 151 4 1 1 30 49 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 4 1 1 29 48 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 150 146 6 151 4 0 0 28 47 -4.568 -4.250 -2.265 -0.520 IL 151 151 5 151 4 1 1 31 50 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 152 152 6 152 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 18 - C - - - ML 153 152 6 155 3 1 1 26 45 -4.123 -0.092 -7.802 -4.237 1.931 -4.885 -3.309 D 154 152 6 155 3 0 0 24 43 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 27 45 -1.813 -0.574 -4.513 0.000 0.000 0.000 0.000 [ MATL 45 ] 20 - C - - - ML 156 155 3 158 3 1 1 25 43 -9.148 -0.009 -7.802 -0.320 1.259 -2.439 -0.686 D 157 155 3 158 3 0 0 24 43 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 21 - C - - - ML 159 158 3 161 3 1 1 24 42 -9.148 -0.009 -7.802 -4.237 1.931 -4.885 -3.309 D 160 158 3 161 3 0 0 23 42 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 22 - C - - - ML 162 161 3 164 3 1 1 22 41 -9.148 -0.009 -7.802 -2.252 1.621 -2.120 -1.046 D 163 161 3 164 3 0 0 22 41 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 23 - u - - - ML 165 164 3 167 3 1 1 21 40 -9.148 -0.075 -4.360 -0.412 -0.670 0.089 0.638 D 166 164 3 167 3 0 0 21 39 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 24 - A - - - ML 168 167 3 170 3 1 1 20 39 -9.083 -0.253 -2.655 1.940 -4.483 -3.952 -4.201 D 169 167 3 170 3 0 0 19 38 -7.122 -2.635 -0.266 IL 170 170 3 170 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 25 - U - - - ML 171 170 3 173 3 1 1 19 38 -8.842 -0.011 -7.496 -0.921 0.236 -1.984 1.030 D 172 170 3 173 3 0 0 18 37 -8.503 -0.626 -1.517 IL 173 173 3 173 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 26 - U - - - ML 174 173 3 176 3 1 1 18 36 -9.072 -0.097 -3.981 -3.503 -3.195 -4.291 1.907 D 175 173 3 176 3 0 0 17 36 -7.230 -2.743 -0.245 IL 176 176 3 176 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 27 - G - - - ML 177 176 3 179 3 1 1 17 35 -8.985 -0.010 -7.639 -0.846 -2.005 1.283 -0.395 D 178 176 3 179 3 0 0 16 35 -7.873 -0.344 -2.265 IL 179 179 3 179 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 28 - A - - - ML 180 179 3 182 3 1 1 15 34 -9.148 -0.009 -7.802 1.944 -4.590 -4.053 -4.308 D 181 179 3 182 3 0 0 16 34 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 29 - A - - - ML 183 182 3 185 3 1 1 14 32 -9.148 -0.009 -7.802 1.944 -4.590 -4.053 -4.308 D 184 182 3 185 3 0 0 15 33 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 30 - G - - - ML 186 185 3 188 3 1 1 12 31 -9.148 -0.009 -7.802 -3.687 -5.145 1.944 -4.425 D 187 185 3 188 3 0 0 13 32 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 31 - U - - - ML 189 188 3 191 2 1 1 1 1 * 0.000 -1.484 -2.300 -3.063 1.731 D 190 188 3 191 2 0 0 0 0 * 0.000 IL 191 191 3 191 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 57 ] - - - - - - E 192 191 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME DUF2815 ACC RF03084 DESC DUF2815 RNA LENG 63 MAXL 131 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Oct 1 23:12:37 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED NSEQ 22 EFFN 10.868408 CKSUM 1820122839 STATS LOCAL MSV -8.1241 0.71912 STATS LOCAL VITERBI -8.7074 0.71912 STATS LOCAL FORWARD -3.7283 0.71912 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.11876 1.65980 1.39600 1.44582 1.38629 1.38629 1.38629 1.38629 0.01274 5.06240 5.06240 1.46634 0.26236 0.00000 * 1 0.89303 1.26818 1.95944 1.78198 1 a - - : 1.38629 1.38629 1.38629 1.38629 0.01274 5.06240 5.06240 1.46634 0.26236 1.09861 0.40547 2 2.28503 2.73497 0.23032 3.24276 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.01274 5.06240 5.06240 1.46634 0.26236 1.09861 0.40547 3 4.43301 5.51156 0.02334 4.94103 3 G - - : 1.38629 1.38629 1.38629 1.38629 0.01274 5.06240 5.06240 1.46634 0.26236 1.09861 0.40547 4 3.16390 3.82246 0.25581 1.82278 4 G - - : 1.38629 1.38629 1.38629 1.38629 0.11666 2.82084 2.98467 0.20051 1.70548 1.09861 0.40547 5 2.16324 2.30553 3.46843 0.28213 6 U - - : 1.38629 1.38629 1.38629 1.38629 0.06619 5.01717 2.85736 1.46634 0.26236 0.22349 1.60807 6 0.12945 3.73030 3.79589 2.59064 7 A - - : 1.38629 1.38629 1.38629 1.38629 0.07535 5.01263 2.71914 1.46634 0.26236 0.20758 1.67424 7 4.36599 5.43419 0.02502 4.87391 8 G - - : 1.38629 1.38629 1.38629 1.38629 0.01351 5.00435 5.00435 1.46634 0.26236 0.18384 1.78419 8 0.22235 2.32690 3.47460 2.64801 9 A - - : 1.38629 1.38629 1.38629 1.38629 0.01274 5.06240 5.06240 1.46634 0.26236 1.09861 0.40547 9 3.69121 0.14463 3.14169 2.71050 10 C - - : 1.38629 1.38629 1.38629 1.38629 0.12552 5.06240 2.19254 1.46634 0.26236 1.09861 0.40547 10 1.61081 3.71576 0.29305 3.50813 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.01425 4.95113 4.95113 1.46634 0.26236 0.61190 0.78158 11 0.65418 3.35910 0.98733 2.62007 12 A - - < 1.38629 1.38629 1.38629 1.38629 0.01334 5.01717 5.01717 1.46634 0.26236 0.22349 1.60807 12 1.14425 2.44104 0.94605 1.57893 13 g - - < 1.38629 1.38629 1.38629 1.38629 0.01274 5.06240 5.06240 1.46634 0.26236 1.09861 0.40547 13 2.38615 0.77657 2.09792 1.12294 14 c - - < 1.38629 1.38629 1.38629 1.38629 0.01274 5.06240 5.06240 1.46634 0.26236 1.09861 0.40547 14 2.38399 1.04808 2.99437 0.67897 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.01274 5.06240 5.06240 1.46634 0.26236 1.09861 0.40547 15 1.45518 3.96177 0.32160 3.78878 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.01274 5.06240 5.06240 1.46634 0.26236 1.09861 0.40547 16 1.54940 3.50569 0.32597 3.33056 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.01274 5.06240 5.06240 1.46634 0.26236 1.09861 0.40547 17 4.83783 0.02873 5.20483 4.20590 18 C - - _ 1.38629 1.38629 1.38629 1.38629 0.07660 2.69701 5.06240 0.17828 1.81223 1.09861 0.40547 18 1.63924 0.43508 3.50758 2.05036 20 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01274 5.06240 5.06240 1.46634 0.26236 1.09861 0.40547 19 4.83783 0.02873 5.20483 4.20590 21 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01274 5.06240 5.06240 1.46634 0.26236 1.09861 0.40547 20 3.41312 0.20468 2.93134 2.31435 22 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01274 5.06240 5.06240 1.46634 0.26236 1.09861 0.40547 21 1.79251 1.90634 1.26649 0.90878 23 u - - _ 1.38629 1.38629 1.38629 1.38629 0.06316 5.06240 2.90259 1.46634 0.26236 1.09861 0.40547 22 0.02317 5.08924 4.69813 4.87608 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.20243 5.01263 1.73383 1.46634 0.26236 2.36739 0.09841 23 2.24320 1.16880 3.12204 0.61790 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01616 4.82636 4.82636 1.46634 0.26236 0.35847 1.19980 24 4.40710 4.13874 4.96498 0.03574 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.08137 5.00435 2.63896 1.46634 0.26236 2.47733 0.08770 25 2.17092 3.13415 0.41907 1.68885 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01445 4.93743 4.93743 1.46634 0.26236 0.09736 2.37758 26 0.02161 5.16079 4.76680 4.94228 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01274 5.06240 5.06240 1.46634 0.26236 1.09861 0.40547 27 0.02161 5.16079 4.76680 4.94228 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01274 5.06240 5.06240 1.46634 0.26236 1.09861 0.40547 28 4.43301 5.51156 0.02334 4.94103 30 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01274 5.06240 5.06240 1.46634 0.26236 1.09861 0.40547 29 2.52782 3.37462 3.94731 0.14314 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01274 5.06240 5.06240 1.46634 0.26236 1.09861 0.40547 30 3.56283 0.46535 3.30949 1.18028 32 C - - > 1.38629 1.38629 1.38629 1.38629 0.01274 5.06240 5.06240 1.46634 0.26236 1.09861 0.40547 31 3.97120 0.34653 3.76813 1.38263 33 C - - > 1.38629 1.38629 1.38629 1.38629 0.01274 5.06240 5.06240 1.46634 0.26236 1.09861 0.40547 32 0.72236 3.16595 0.99608 2.27402 34 a - - > 1.38629 1.38629 1.38629 1.38629 0.01274 5.06240 5.06240 1.46634 0.26236 1.09861 0.40547 33 1.27170 2.22132 0.69089 2.20684 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.01274 5.06240 5.06240 1.46634 0.26236 1.09861 0.40547 34 2.08521 1.46273 1.78442 0.74187 36 u - - > 1.38629 1.38629 1.38629 1.38629 0.01274 5.06240 5.06240 1.46634 0.26236 1.09861 0.40547 35 2.71853 1.03441 3.17009 0.62252 37 U - - > 1.38629 1.38629 1.38629 1.38629 0.05151 5.06240 3.12636 1.46634 0.26236 1.09861 0.40547 36 2.53933 0.35291 3.56906 1.65937 38 C - - > 1.38629 1.38629 1.38629 1.38629 1.13033 1.49151 0.79398 1.02790 0.44279 0.25352 1.49641 37 0.93396 2.37506 2.52336 0.83516 43 u - - : 1.38629 1.38629 1.38629 1.38629 0.02241 4.50249 4.50249 1.46634 0.26236 0.54544 0.86652 38 1.29241 1.75026 2.66445 0.72976 44 u - - : 1.38629 1.38629 1.38629 1.38629 0.01548 4.86934 4.86934 1.46634 0.26236 0.33241 1.26299 39 0.49010 3.00007 3.11299 1.22695 45 A - - : 1.38629 1.38629 1.38629 1.38629 0.01331 5.01911 5.01911 1.46634 0.26236 2.27131 0.10890 40 0.36732 1.67556 3.26178 2.50243 46 A - - : 1.38629 1.38629 1.38629 1.38629 0.01331 5.01911 5.01911 1.46634 0.26236 0.23112 1.57816 41 0.96890 1.87784 1.73906 1.23136 47 a - - : 1.38629 1.38629 1.38629 1.38629 0.01274 5.06240 5.06240 1.46634 0.26236 1.09861 0.40547 42 1.99695 1.83244 0.82556 1.32336 48 g - - : 1.38629 1.38629 1.38629 1.38629 0.01274 5.06240 5.06240 1.46634 0.26236 1.09861 0.40547 43 2.02548 2.35422 1.34475 0.66846 49 U - - : 1.38629 1.38629 1.38629 1.38629 0.01274 5.06240 5.06240 1.46634 0.26236 1.09861 0.40547 44 1.45348 2.06078 2.97593 0.53122 50 U - - : 1.38629 1.38629 1.38629 1.38629 0.01274 5.06240 5.06240 1.46634 0.26236 1.09861 0.40547 45 0.38988 2.98934 2.51315 1.65271 51 A - - : 1.38629 1.38629 1.38629 1.38629 0.01274 5.06240 5.06240 1.46634 0.26236 1.09861 0.40547 46 0.20982 3.47442 3.58732 2.03548 52 A - - : 1.38629 1.38629 1.38629 1.38629 0.01274 5.06240 5.06240 1.46634 0.26236 1.09861 0.40547 47 0.42356 2.06291 3.05868 1.76459 53 A - - : 1.38629 1.38629 1.38629 1.38629 0.01274 5.06240 5.06240 1.46634 0.26236 1.09861 0.40547 48 0.02161 5.16079 4.76680 4.94228 54 A - - : 1.38629 1.38629 1.38629 1.38629 0.01274 5.06240 5.06240 1.46634 0.26236 1.09861 0.40547 49 0.02161 5.16079 4.76680 4.94228 55 A - - : 1.38629 1.38629 1.38629 1.38629 0.01274 5.06240 5.06240 1.46634 0.26236 1.09861 0.40547 50 4.43301 5.51156 0.02334 4.94103 56 G - - : 1.38629 1.38629 1.38629 1.38629 0.01274 5.06240 5.06240 1.46634 0.26236 1.09861 0.40547 51 4.43301 5.51156 0.02334 4.94103 57 G - - : 1.38629 1.38629 1.38629 1.38629 0.01274 5.06240 5.06240 1.46634 0.26236 1.09861 0.40547 52 0.64176 2.94985 3.07267 0.98085 58 A - - : 1.38629 1.38629 1.38629 1.38629 0.01274 5.06240 5.06240 1.46634 0.26236 1.09861 0.40547 53 0.38038 2.62979 1.88488 2.38101 59 A - - : 1.38629 1.38629 1.38629 1.38629 0.01274 5.06240 5.06240 1.46634 0.26236 1.09861 0.40547 54 0.86399 2.10552 1.71852 1.28226 60 a - - : 1.38629 1.38629 1.38629 1.38629 0.01274 5.06240 5.06240 1.46634 0.26236 1.09861 0.40547 55 1.43753 1.91109 2.92198 0.57850 61 U - - : 1.38629 1.38629 1.38629 1.38629 0.01274 5.06240 5.06240 1.46634 0.26236 1.09861 0.40547 56 0.46061 2.41777 2.49745 1.62109 62 A - - : 1.38629 1.38629 1.38629 1.38629 0.01274 5.06240 5.06240 1.46634 0.26236 1.09861 0.40547 57 0.77270 2.02208 2.72958 1.07701 63 a - - : 1.38629 1.38629 1.38629 1.38629 0.08214 5.06240 2.62374 1.46634 0.26236 1.09861 0.40547 58 1.16565 1.60377 1.85803 1.10514 64 u - - : 1.38629 1.38629 1.38629 1.38629 0.21954 4.99391 1.65896 1.46634 0.26236 2.59955 0.07721 59 1.12572 1.58487 2.08655 1.05990 65 u - - : 1.38629 1.38629 1.38629 1.38629 0.23863 4.79111 1.58966 1.46634 0.26236 3.70215 0.02498 60 0.79763 1.78581 2.42443 1.22617 66 a - - : 1.38629 1.38629 1.38629 1.38629 0.86513 0.56444 4.57334 0.65511 0.73269 0.03170 3.46734 61 0.02161 5.16079 4.76680 4.94228 70 A - - : 1.38629 1.38629 1.38629 1.38629 0.01274 5.06240 5.06240 1.46634 0.26236 1.09861 0.40547 62 4.49393 4.21854 5.05405 0.03281 71 U - - : 1.38629 1.38629 1.38629 1.38629 0.01274 5.06240 5.06240 1.46634 0.26236 1.09861 0.40547 63 4.43301 5.51156 0.02334 4.94103 72 G - - : 1.38629 1.38629 1.38629 1.38629 0.00639 5.05605 * 1.46634 0.26236 0.00000 * //