# STOCKHOLM 1.0
#=GF ID DUF805
#=GF AC RF03081
#=GF DE DUF805 RNA
#=GF AU Weinberg Z; 0000-0002-6681-3624
#=GF GA 51.1
#=GF NC 51.0
#=GF TC 51.2
#=GF SE Weinberg Z
#=GF SS Published; PMID:28977401;
#=GF TP Cis-reg;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 27.97 -Z 2958934 CM SEQDB
#=GF CL CL00115
#=GF DR SO; 0005836; regulatory_region;
#=GF RN [1]
#=GF RM 28977401
#=GF RT Detection of 224 candidate structured RNAs by comparative analysis of
#=GF RT specific subsets of intergenic regions.
#=GF RA Weinberg Z, Lunse CE, Corbino KA, Ames TD, Nelson JW, Roth A, Perkins KR,
#=GF RA Sherlock ME, Breaker RR
#=GF RL Nucleic Acids Res. 2017;45:10811-10823.
#=GF CC Bacteroidetes, Aeromonadales. Lineage (Bacteroidetes)
#=GF WK DUF805_RNA_motif
#=GF SQ 46

URS0000D66257_12908/1-68  UGGAAGUAGAGACCAGU-AACUACUCAA--AUAAACG-GGUAUAACU-AAAAAACCUUAAGAGUA-AGGUGUAA
URS0000D67100_12908/1-71  UAAUAGCUGAGUCCAGA-CACAUCUACAAAAAAAACGGGGCGUUACU-GCGAAGCCAUAUUAGUA-UUAUAAUA
URS0000D6BCA4_525257/1-65 CUUUCAUGGAGUUAAGA-AACCACGU------AAACAAAGCGGAACC-GAAAAGCUAAACGAGUA-GGAAGAAU
URS0000D69842_12908/1-69  UAAAAAAGGAGUCUAAG-AACCUUUCAA--AAAAAUAAGGCGGAACC-GAAAAGCCAAAUGAGUA-GGAUAUUU
URS0000D67912_12908/1-69  AAAGUUUAGAGUCAAGAAAACUAAUUAA---AAAACAGGGAGUUUCC-GAAAAUCCAUAAGAGUA-GGAUAAAC
URS0000D6965A_12908/1-69  UCUCCGUGAAGACCAGC-CCCCACGUA----AAAACGGGGCGUGACCCGAAAAGCCUGACGAGUAGGGACUUAA
URS0000D6572A_12908/1-69  UAAUUGUAGAGACAAGG-AACUACAUGA--AAACACGGGGCGUUUCU-GAAAAGCCAAAUGAGUA-AGAGAAAA
URS0000D6A9D5_12908/1-65  GGGCAAUGGAG--CAGA-UACCAUUUGA---AAAACG-GGCGAGUUC-GAAAAGCCAGAGGAGUA-GAGGAAAU
URS0000D6BEA4_12908/1-67  GGGCAAUGGAAGACCGA-GACCAUUUU----AAAACGUGGCGAGUUC-GAAAAGCCUUAUGAGUA-GAGGAAAC
URS0000D6A1C4_12908/1-69  AGAAAGUGGAGAAAAGA-AACCACAAA----AAAACUGGGUGUAUUCCGAAAGACCAUAAGAGUAGGAACAAAC
URS0000D68C4F_12908/1-70  UUCACGUUGAGACCAGA-AACAACUUUA---AAAACUGAGAGUAUUCUGAAAAUCUUUAAGAGUAAGAACAAAA
URS0000D6AB9B_12908/1-68  AAACAGUGGAGACCAGC-GACCACUUUA--A-AAGCGGGGUGACACU-GAAAUGCCAUAACAGUA-GGGGAAAU
URS0000D65E8C_411154/1-66 CGUCUUUGGAGUCCAGU-GACCAUUUU-----AAACGGGGCGUAACC-GAAAAGCCUUAUGAGUA-GGAGUAUA
URS0000D65AA5_12908/1-68  CUUAUGUGGAGUCCAGC-CACCACACCA---AAAACGGGGCGUCACC-GAAAAGCCAGAUGAGUA-GGACCAUC
URS0000D6D1D2_382245/1-71 CCCCGGUGGAGACCGGA-AACCACUUGA--AUCAACGGGGCGGAACCCGAACAGCCAAACGAGUAGGGACAAGA
URS0000D6CF98_12908/1-71  CCCCGGUGGAGUCCAGA-CACCACUUGA--AUAAACGGGGCGGAACCCGAACAGCCAAACGAGUAGGGACAAGA
URS0000D67CC4_380703/1-71 CCCCGGUGGAGUCCGGA-CACCACUUGA--AUAAACGGGGCGGAACCCGAACAGCCAAACGAGUAGGGACAAGA
URS0000D67946_12908/1-65  CAGAAAUGGAGUCCAGA-AACCAUUAC-----AAACGGGGUGAAACC-GAA-AACCUUCAGAGUA-GACAAUUA
URS0000D6647C_12908/1-66  AAAAAGUGGAGACCAGA-AACCACUCGA---AAAACGG-GCGAUACA-AAAAAGU-AAAUUAUUA-UGAAAUUC
URS0000D6BC0A_313606/1-68 AACCAAAGGAGACCAGA-AACCUUUAAA---CAAACGGGGCAGAACC-GAAAAGCCAUACGAGUA-GGAAAAUA
URS0000D682DC_313595/1-68 ACAAAGUGGAGGCCAGA-ACCCAUUAGA---AAAACGGCACGGAACC-GAAAAGUGAUAUGAGUA-GGACAAAA
URS0000D6B83B_12908/1-70  AAAAAAGGGAGACCAGU-ACCC-UAUUC--CAAAACGGGGCGAAUUCCGAAAAGCCAUACGAGUAAGAAAGAUU
URS0000D66C0E_485917/1-65 UAAUGGUGGAG--CAGC-AACCACUUGU--AAAAACG-GGCGGG-CC-GAAAAGCCAAAAGAGUA-GGAACACA
URS0000D6607A_485918/1-65 ACCAGGUGGAG--CAGC-GACCACUCAA---AAAACG-GGCGAAGCC-GAAAAGCCAGACGAGUA-GGAACAAA
URS0000D68428_12908/1-68  AAAGAGUGGAGUUCAGC-GACCACUUAA--AAAAACGGGGCGACACC--AAAAGCCUUACGAGUA-GGAAAUUU
URS0000D6C052_12908/1-71  UGAUAGUGGAGUUCAGA-UACCACUUUA--AUAAACGGGGCGCAAUCCGAAAAGCCUUAUGAGUAAGAAAAUUU
URS0000D6C0C8_12908/1-66  UCAAAAUGGAGUCCAGA-AACUAUUAUA----AAACGGGGAGAAACC-GAA-AGCCAUACGAGUA-GGAAAUCU
URS0000D66666_12908/1-68  AAAAUAUGGAGCCUAGA-AGCCAUCAU---AAAAACGAGGCGCAACU-GAAAAGCCAAAUGAGUA-AGAAAAAA
URS0000D6D137_194439/1-67 AAAUAAUGGAGACCAGC-GACCAUUUC----AAAACGGGGCGACACC-GAAAAGCCAAACGAGUA-GGGACAUA
URS0000D68925_12908/1-68  UAAGAGUGGAGUCCAGA-UCCCACUAUA---AAAACGGGGCGUCACC-GAAAAGCCAAAUGAGUA-GGUAUUAA
URS0000D6A0A0_504472/1-67 AAAUAGUGGAGACCAGC-AACCACCUU----AAAACGGGGCGAAGCC-GAAAAGCCAAACGAGUA-GGAAAAAC
URS0000D6A849_12908/1-70  AAAAAGUGGAGACCAGC-AACCAUUUUA---AAAACGGGGCGAAAACUGAAAAGCCAAACGAGUAAGAAUAAAA
URS0000D6BFC2_313595/1-65 AAAAAGUGGAGUCCAGA-CACCAC-AU-----AAACGGGGCGCAACU-GAAAAGCCAAAUGAGUA-AGACAGAU
URS0000D6CBA5_12908/1-68  AAAAAGUGGAGACCAGA-AACCACUAUA---AAAACGGGGCACCACC-GAAAAGCCAAAUGAGUA-GGACAAAA
URS0000D6C9ED_12908/1-70  AAAAAGUGGAGACCAGA-AACCACUAAA--AAAAAGGGGGCGACACC-GAAAAGCCAAAUGAGUAAGGACAGCA
URS0000D68500_12908/1-68  AAAAAGUAGAAACCAGA-AACUACUAAA---AAAACGGGGAUAAAUCCGAAAAUCCA-AAGAGUA-GGAAAUUU
URS0000D65A1D_12908/1-68  AAAAAGUGGAGA-CAGU-GCCCACUAAA---AAAACGUGGCGGAAACCGAAAAGCC-UAUGAGUAGGUAAUCUU
URS0000D669E5_269798/1-68 UUACCUUGGAGUCCAGA-AACCAUAUCA---AAAACGGGGCGAUACU-GAAAAGCCAUACGAGUA-GGAAUUAA
URS0000D665DE_12908/1-71  AAUAAGUGGAGACUAGA-GACCACUAAA--AAAAACGGGACGGAUUCUGAAAAUCCUAAUGAGUAGGAAAAUUA
URS0000D6BD45_376686/1-69 UAAAUGUGGAG--CAGA-ACCCACUAUA--AAAAACGAGGCGGAACCUGAAAAGCCUUAUGAGUAAGGAAAAUA
URS0000D68734_376686/1-67 AAUAGGUGGAG--CAGA-ACCCACUAAA--AAAAACGAGGCGGAUCC-GAAAAGCCAUACGAGUA-GGAAACCA
URS0000D6CE2A_12908/1-71  CAAAAGUUGAGACCAGA-AACAACUUUA--AAAAACGGGGCGAAAUCCGAAAAGCCAUAUGAGUAGGAAAAUAU
URS0000D688A1_12908/1-71  AAAAAGUGGAGACCAGA-ACCCACUUUA--AAAAACGGGGCGUAUUCUGAAAAGCCUUAUGAGUAGGAAAAAUU
URS0000D66BC4_12908/1-65  AUAAAGUGGAGACUAGA-ACCCACUUAA--AAAAAAAGGGCGUAUUCCGAAAAGCCUAAUGAGUAGGA------
URS0000D68490_12908/1-68  AGAAUGUGGAGUCCAGA-UACCACCUAA---AAAACGGGGCGUAACC-GAAAAGCCAUACGAGUA-GGAAAACU
URS0000D6C946_194439/1-68 UAAAUGUGGAGUCCAGA-AACCACAAGA---AAAACGGGGCGAUACC-GAAAAGCCUUACGAGUA-GGAAAACA
#=GC SS_cons              :::::<<<<________.__>>>>::::...:::::::<<<____AA._____>>>:::::::::.aa::::::
#=GC RF                   aaaaaGUGGAGaCCAGA.aACCACUuaA...AAAACGGGGcGaaACC.GAAAAgCCAuAuGAGUA.GGAaAaaa
//
