INFERNAL1/a [1.1.5 | Sep 2023] NAME DUF3800-VIII ACC RF03075 DESC DUF3800-VIII RNA STATES 196 NODES 41 CLEN 64 W 125 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 03:13:50 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03075/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 209 EFFN 17.230637 CKSUM 3713547164 NULL 0.000 0.000 0.000 0.000 GA 40.20 TC 40.20 NC 40.10 EFP7GF -21.8395 0.71935 ECMLC 0.60199 -5.51724 3.64649 1600000 298498 0.004020 ECMGC 0.43915 -18.16340 -3.58721 1600000 240998 0.001660 ECMLI 0.56805 -4.74095 4.65500 1600000 249551 0.004809 ECMGI 0.47027 -13.59619 -1.14215 1600000 139838 0.002860 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 125 196 -10.518 -10.457 -0.041 -6.422 -8.248 -6.417 IL 1 1 2 1 6 1 4 126 197 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 4 126 197 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 115 a u - - MP 3 2 3 7 6 2 10 125 196 -10.485 -10.424 -0.008 -9.201 -9.480 -9.876 -1.511 -2.178 -2.178 2.286 -1.717 -2.851 1.100 -1.100 -1.939 0.786 -3.057 0.123 1.246 -1.877 -0.439 -0.515 ML 4 2 3 7 6 1 2 123 194 -6.687 -7.033 -1.044 -1.177 -6.883 -4.412 0.262 -0.160 -0.593 0.313 MR 5 2 3 7 6 1 2 122 194 -7.070 -5.799 -1.708 -5.778 -0.768 -3.991 0.242 -0.364 -0.333 0.318 D 6 2 3 7 6 0 0 120 192 -9.614 -8.312 -1.388 -4.792 -4.809 -0.884 IL 7 7 5 7 6 1 3 124 195 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 3 124 195 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 114 a u - - MP 9 8 6 13 6 2 9 123 194 -10.511 -10.450 -0.008 -9.227 -9.507 -9.902 -0.731 -1.786 -1.915 2.049 -1.254 -2.766 1.115 -1.134 -2.502 1.093 -3.075 0.037 1.138 -2.575 -0.393 -0.100 ML 10 8 6 13 6 1 2 121 192 -6.388 -6.734 -1.448 -0.878 -6.584 -4.113 0.301 -0.585 0.231 -0.109 MR 11 8 6 13 6 1 2 120 192 -7.070 -5.799 -1.467 -5.778 -0.911 -3.991 0.247 -0.073 -0.403 0.146 D 12 8 6 13 6 0 0 116 187 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 2 122 193 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 3 122 193 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 113 a u - - MP 15 14 6 19 6 2 9 121 192 -10.514 -10.453 -0.008 -9.230 -9.509 -9.904 -1.262 -1.924 -2.457 2.016 -2.446 -3.309 1.654 -2.535 -1.986 0.977 -3.098 -0.602 1.625 -2.237 -0.636 -0.858 ML 16 14 6 19 6 1 2 119 190 -6.388 -6.734 -1.448 -0.878 -6.584 -4.113 0.647 -0.576 -0.278 -0.091 MR 17 14 6 19 6 1 1 118 190 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 114 185 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 2 120 191 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 2 120 191 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 112 g c - - MP 21 20 6 25 6 2 8 119 190 -10.514 -10.453 -0.008 -9.230 -9.509 -9.904 -2.032 -2.586 -3.062 1.535 -2.527 -3.874 1.561 -2.996 -3.173 2.477 -3.705 0.141 0.436 -2.824 -0.804 -1.604 ML 22 20 6 25 6 1 1 117 188 -6.388 -6.734 -1.128 -1.143 -6.584 -4.113 0.301 -0.585 0.231 -0.109 MR 23 20 6 25 6 1 1 116 188 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 112 183 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 2 118 189 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 2 118 189 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 111 C G - - MP 27 26 6 31 6 2 8 117 188 -10.518 -6.276 -0.026 -9.234 -9.513 -9.908 -4.786 -4.565 -4.811 -0.193 -1.808 -5.645 3.272 -2.506 -4.700 0.291 -5.217 -2.234 1.298 -4.991 -0.469 -2.670 ML 28 26 6 31 6 1 1 115 186 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 1 114 186 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 110 181 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 2 116 187 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 2 116 187 -2.663 -0.403 -6.174 -4.342 -5.448 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 109 C G - - MP 33 32 6 37 6 2 7 115 186 -10.518 -10.457 -0.008 -9.234 -9.513 -9.908 -6.740 -6.799 -6.261 -2.853 -4.728 -6.550 3.545 -2.482 -6.302 -2.718 -6.522 -4.787 0.789 -6.687 0.964 -5.084 ML 34 32 6 37 6 1 1 113 184 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 1 112 184 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 108 179 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 1 114 185 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 2 114 185 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 108 C G - - MP 39 38 6 43 6 2 7 113 184 -10.518 -10.457 -0.008 -9.234 -9.513 -9.908 -7.052 -7.233 -6.446 -3.379 -2.518 -6.641 3.813 -2.963 -6.532 -3.296 -6.679 -5.425 -0.793 -6.934 -0.405 -5.325 ML 40 38 6 43 6 1 1 111 182 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 1 110 182 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 106 177 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 1 112 183 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 1 112 183 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 107 U G - - MP 45 44 6 49 6 2 7 111 182 -10.518 -10.457 -0.008 -9.234 -9.513 -9.908 -6.196 -6.184 -5.918 -1.242 -4.627 -6.357 0.200 -5.413 -5.939 -2.282 -0.411 -2.972 -0.100 -3.158 3.593 -3.427 ML 46 44 6 49 6 1 1 109 180 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 1 108 180 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 104 175 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 1 110 181 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 1 110 181 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 9 106 g c - - MP 51 50 6 55 6 2 6 109 180 -10.518 -6.638 -0.022 -9.234 -9.513 -9.908 -4.545 -1.711 -4.441 1.007 -5.416 -3.682 -0.304 -5.064 -4.775 2.742 -3.231 2.167 -0.447 -1.816 -2.638 -2.712 ML 52 50 6 55 6 1 1 107 178 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 1 106 178 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 102 173 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 108 179 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 1 108 179 -2.607 -0.422 -6.118 -4.286 -5.392 0.000 0.000 0.000 0.000 [ MATP 10 ] 10 104 c g - - MP 57 56 6 61 6 2 5 107 178 -2.958 -10.457 -0.212 -9.234 -7.755 -9.908 -4.565 -2.687 -4.618 0.265 -3.181 -5.463 2.989 -4.310 -4.527 0.123 -5.054 -2.144 1.914 -4.790 0.036 -2.183 ML 58 56 6 61 6 1 1 105 176 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 104 175 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 100 171 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 2 106 177 -4.697 -4.960 -0.143 -6.615 -7.391 -7.052 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 106 177 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 12 103 u a - - MP 63 62 6 67 6 2 5 105 176 -10.513 -10.452 -0.022 -9.229 -6.484 -9.904 -2.090 -2.293 -1.969 1.146 -1.891 -2.883 1.861 -2.485 -2.532 0.797 -3.105 -0.915 2.148 -2.156 0.222 -1.007 ML 64 62 6 67 6 1 1 103 174 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 102 174 -7.125 -5.854 -1.763 -3.203 -0.966 -4.046 0.671 -0.592 -0.297 -0.104 D 66 62 6 67 6 0 0 98 169 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 104 175 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 104 175 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 13 102 u a - - MP 69 68 6 73 6 2 5 103 174 -3.320 -6.660 -0.175 -9.215 -9.495 -9.890 -1.014 -1.109 -1.401 0.887 -1.619 -1.441 1.651 -2.777 -1.155 1.026 -2.746 -1.140 1.862 -1.628 0.280 -0.809 ML 70 68 6 73 6 1 1 101 172 -6.407 -6.753 -1.105 -1.162 -6.603 -4.133 0.172 -0.366 -0.411 0.428 MR 71 68 6 73 6 1 1 101 172 -3.795 -6.095 -1.272 -6.073 -1.207 -4.287 0.936 -0.804 -0.542 -0.273 D 72 68 6 73 6 0 0 96 167 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 102 173 -4.440 -3.893 -0.220 -6.358 -7.135 -6.795 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 102 173 -2.680 -0.398 -6.191 -4.359 -5.465 0.000 0.000 0.000 0.000 [ MATP 13 ] 15 100 u a - - MP 75 74 6 79 6 2 4 101 172 -2.006 -7.222 -0.434 -9.234 -9.513 -9.908 -0.739 -2.455 -0.236 1.175 -1.667 -2.924 1.262 -2.382 -1.565 0.954 -2.655 -0.715 2.164 -2.251 -0.160 -1.167 ML 76 74 6 79 6 1 1 98 169 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 98 169 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 94 165 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 2 100 171 -5.482 -2.084 -0.458 -7.400 -8.177 -7.837 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 99 170 -3.466 -0.217 -6.977 -5.145 -6.250 0.000 0.000 0.000 0.000 [ MATP 14 ] 17 98 g c - - MP 81 80 6 85 6 2 4 98 169 -10.518 -10.457 -0.022 -9.234 -6.480 -9.908 -1.551 -1.128 -2.163 1.318 -1.703 -3.304 1.422 -2.804 -2.258 1.920 -3.093 -0.975 1.639 -1.509 -0.543 -1.058 ML 82 80 6 85 6 1 1 96 168 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 96 167 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 93 164 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 98 169 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 97 169 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 18 97 c g - - MP 87 86 6 91 6 2 4 96 167 -10.504 -10.443 -0.008 -9.219 -9.499 -9.894 -3.897 -3.245 -4.014 0.464 -1.114 -4.863 2.629 -3.430 -3.990 1.200 -4.536 -1.564 1.214 -4.173 1.240 -2.951 ML 88 86 6 91 6 1 1 95 166 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 94 166 -7.368 -6.097 -1.056 -6.076 -1.209 -4.289 0.938 -0.806 -0.544 -0.275 D 90 86 6 91 6 0 0 92 163 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 96 167 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 95 167 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 19 96 C G - - MP 93 92 6 97 4 2 2 94 166 -9.366 -9.573 -0.010 -7.987 -7.135 -7.371 -6.486 -3.569 -4.855 -6.653 3.742 -2.315 -6.580 -3.518 -6.716 -5.675 -1.549 -6.989 0.817 -5.378 ML 94 92 6 97 4 1 1 93 165 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 4 1 1 92 164 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 96 92 6 97 4 0 0 91 162 -4.568 -4.250 -2.265 -0.520 IL 97 97 5 97 4 1 1 94 165 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 98 98 6 98 3 1 1 94 165 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 20 - G - - - ML 99 98 6 101 3 1 2 92 164 -10.296 -0.004 -8.950 -2.853 -5.346 1.916 -3.957 D 100 98 6 101 3 0 0 90 161 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 1 93 164 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 21 - A - - - ML 102 101 3 104 3 1 1 91 163 -10.296 -0.004 -8.950 1.982 -6.247 -5.637 -5.849 D 103 101 3 104 3 0 0 89 160 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 92 163 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 22 - A - - - ML 105 104 3 107 3 1 1 90 162 -10.609 -0.004 -8.927 1.982 -6.247 -5.637 -5.849 D 106 104 3 107 3 0 0 89 160 -5.620 -0.734 -1.403 IL 107 107 3 107 3 1 1 91 162 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 95 - A - - MR 108 107 3 110 3 1 1 89 161 -10.609 -0.004 -8.927 1.982 -6.247 -5.637 -5.849 D 109 107 3 110 3 0 0 87 158 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 1 90 161 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 94 - U - - MR 111 110 3 113 3 1 1 88 160 -10.609 -0.152 -3.330 -5.389 -4.914 -6.229 1.974 D 112 110 3 113 3 0 0 85 157 -6.390 -1.568 -0.620 IR 113 113 3 113 3 1 1 89 160 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 93 - G - - MR 114 113 3 116 3 1 1 88 159 -10.461 -0.011 -7.228 -1.627 -2.748 1.669 -1.527 D 115 113 3 116 3 0 0 83 154 -8.674 -3.852 -0.107 IR 116 116 3 116 3 1 1 88 159 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 92 - U - - MR 117 116 3 119 3 1 1 87 158 -10.455 -0.011 -7.180 -0.137 -0.749 -1.988 1.166 D 118 116 3 119 3 0 0 83 154 -8.720 -3.898 -0.104 IR 119 119 3 119 3 1 1 87 158 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 91 - a - - MR 120 119 3 122 3 1 1 86 157 -10.448 -0.004 -8.766 0.812 -1.068 -1.554 0.513 D 121 119 3 122 3 0 0 82 153 -8.767 -3.944 -0.100 IR 122 122 3 122 3 1 1 86 157 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 90 - U - - MR 123 122 3 125 3 1 1 85 156 -10.448 -0.222 -2.816 -1.015 -1.057 -0.417 1.186 D 124 122 3 125 3 0 0 82 153 -8.767 -3.944 -0.100 IR 125 125 3 125 3 1 1 85 156 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 89 - U - - MR 126 125 3 128 3 1 1 84 155 -0.874 -1.146 -8.549 -1.630 0.154 -2.189 1.230 D 127 125 3 128 3 0 0 82 153 -1.273 -0.937 -3.965 IR 128 128 3 128 3 1 1 85 156 -0.373 -2.142 -9.452 0.000 0.000 0.000 0.000 [ MATR 27 ] - 47 - A - - MR 129 128 3 131 5 1 1 33 52 -9.270 -0.009 -9.086 -9.298 -10.189 1.496 -2.211 -0.471 -2.045 D 130 128 3 131 5 0 0 32 50 -5.352 -0.707 -2.978 -4.409 -2.404 IR 131 131 3 131 5 1 1 34 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 23 46 g u - - MP 132 131 3 136 6 2 2 32 51 -10.518 -10.457 -0.014 -7.403 -9.513 -9.908 -1.693 0.807 -7.491 -0.028 -5.316 -1.132 0.781 -2.386 -1.142 -0.044 -0.001 2.773 -1.399 -2.213 -1.420 -1.559 ML 133 131 3 136 6 1 1 31 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 3 136 6 1 1 31 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 3 136 6 0 0 29 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 33 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 32 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 24 45 c g - - MP 138 137 6 142 6 2 2 30 49 -10.512 -10.451 -0.008 -9.228 -9.507 -9.902 -2.296 -2.507 -2.108 0.577 0.124 -3.345 2.286 -2.835 -1.331 0.616 -0.499 -0.465 1.528 -1.606 -0.283 -1.757 ML 139 137 6 142 6 1 1 29 47 -6.452 -6.798 -1.056 -1.207 -6.648 -4.177 0.138 0.138 -0.539 0.152 MR 140 137 6 142 6 1 1 29 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 31 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 30 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 25 44 C G - - MP 144 143 6 148 6 2 2 28 47 -10.518 -10.457 -0.008 -9.234 -9.513 -9.908 -6.256 -6.166 -5.951 -2.117 -2.851 -6.396 3.666 -3.171 -5.931 -1.221 -6.248 -3.951 0.800 -6.294 -1.138 -4.693 ML 145 143 6 148 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 29 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 28 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 26 43 c g - - MP 150 149 6 154 6 2 2 26 45 -10.518 -10.457 -0.008 -9.234 -9.513 -9.908 -6.405 -6.363 -6.051 -2.351 -3.026 -6.445 2.979 -5.427 -6.051 -2.180 -6.338 -4.210 2.323 -6.418 1.244 -4.823 ML 151 149 6 154 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 27 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 27 42 u g - - MP 156 155 6 160 6 2 2 24 43 -10.518 -10.457 -0.008 -9.234 -9.513 -9.908 -2.935 -1.004 -3.110 0.069 -2.239 -3.326 1.746 -2.826 -3.150 0.662 -3.715 -1.546 1.366 -3.256 2.368 -1.179 ML 157 155 6 160 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 6 160 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 28 41 g c - - MP 162 161 6 166 6 2 2 22 41 -10.518 -10.457 -0.008 -9.234 -9.513 -9.908 -4.763 -0.167 -4.603 2.540 -5.698 -5.235 -0.827 -5.261 -5.001 2.603 -5.273 0.280 -0.188 -4.487 -2.822 -2.536 ML 163 161 6 166 6 1 1 21 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 165 161 6 166 6 0 0 19 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 166 166 5 166 6 1 1 23 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 167 167 6 167 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 29 40 C G - - MP 168 167 6 172 6 2 2 20 39 -10.518 -10.457 -0.013 -9.234 -9.513 -7.740 -4.872 -4.627 -4.885 1.715 -3.898 -5.703 3.134 -3.803 -4.791 0.583 -3.745 -2.312 0.457 -5.074 -1.424 -3.577 ML 169 167 6 172 6 1 1 19 37 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 170 167 6 172 6 1 1 19 37 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 171 167 6 172 6 0 0 17 35 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 172 172 5 172 6 1 1 21 38 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 173 173 6 173 5 1 1 20 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 30 39 G C - - MP 174 173 6 178 6 2 2 18 37 -10.513 -10.452 -0.008 -9.228 -9.508 -9.903 -5.157 -2.754 -5.029 -0.157 -6.205 -5.615 -0.659 -5.641 -5.282 3.689 -5.578 -0.657 -1.537 -4.916 -3.289 -2.755 ML 175 173 6 178 6 1 1 18 35 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 6 178 6 1 1 18 35 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 6 178 6 0 0 16 33 -9.268 -7.966 -3.763 -4.445 -4.463 -0.270 IL 178 178 5 178 6 1 1 19 36 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 18 36 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 31 38 U A - - MP 180 179 6 184 4 2 2 16 34 -9.359 -1.500 -0.641 -7.981 -5.540 -5.370 -3.457 -0.097 -4.220 -6.073 1.573 -4.938 -5.357 -1.114 -5.784 -3.085 3.325 -5.678 0.176 -4.129 ML 181 179 6 184 4 1 1 17 34 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 4 1 1 17 34 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 183 179 6 184 4 0 0 16 33 -4.774 -4.455 -1.675 -0.726 IL 184 184 5 184 4 1 1 18 35 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 185 185 6 185 3 1 1 15 33 -2.279 -0.351 -6.698 0.000 0.000 0.000 0.000 [ MATL 37 ] 32 - U - - - ML 186 185 6 188 3 1 1 13 32 -10.296 -0.004 -8.950 -0.912 -2.113 -1.351 1.509 D 187 185 6 188 3 0 0 15 33 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 33 - C - - - ML 189 188 3 191 3 1 1 11 30 -10.296 -0.020 -6.243 -1.290 1.356 -2.405 -0.246 D 190 188 3 191 3 0 0 13 32 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 34 - C - - - ML 192 191 3 194 2 1 1 1 1 * 0.000 -0.821 1.420 -2.576 -0.763 D 193 191 3 194 2 0 0 0 0 * 0.000 IL 194 194 3 194 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 40 ] - - - - - - E 195 194 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME DUF3800-VIII ACC RF03075 DESC DUF3800-VIII RNA LENG 64 MAXL 130 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 03:13:50 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03075/CM NSEQ 209 EFFN 209.000000 CKSUM 3713547164 STATS LOCAL MSV -8.1235 0.71935 STATS LOCAL VITERBI -8.5673 0.71935 STATS LOCAL FORWARD -3.5189 0.71935 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.57471 1.43004 1.19782 1.37919 1.38629 1.38629 1.38629 1.38629 0.01885 7.65539 4.00654 1.46634 0.26236 0.00000 * 1 0.74530 1.93724 1.75648 1.56708 1 a - - < 1.38629 1.38629 1.38629 1.38629 0.00096 7.63751 7.63751 1.46634 0.26236 0.21184 1.65599 2 0.84959 1.83671 1.57115 1.58347 2 a - - < 1.38629 1.38629 1.38629 1.38629 0.00095 7.65268 7.65268 1.46634 0.26236 0.26059 1.47228 3 0.95996 1.56379 1.89720 1.35572 3 a - - < 1.38629 1.38629 1.38629 1.38629 0.00095 7.65539 7.65539 1.46634 0.26236 1.09861 0.40547 4 1.55287 1.55385 0.69054 2.58200 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.00095 7.65539 7.65539 1.46634 0.26236 1.09861 0.40547 5 3.81615 0.25282 3.08190 1.86108 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.00095 7.65539 7.65539 1.46634 0.26236 1.09861 0.40547 6 7.05463 0.24809 7.07425 1.52325 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.00095 7.65539 7.65539 1.46634 0.26236 1.09861 0.40547 7 7.11678 0.06310 7.11724 2.82128 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.00095 7.65539 7.65539 1.46634 0.26236 1.09861 0.40547 8 4.04637 3.59517 2.83201 0.10963 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.00095 7.65539 7.65539 1.46634 0.26236 1.09861 0.40547 9 2.17896 3.55592 0.22165 2.86318 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.00095 7.65539 7.65539 1.46634 0.26236 1.09861 0.40547 10 2.81248 0.51622 3.47894 1.16370 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.20563 1.71036 5.28496 0.00523 5.25607 1.09861 0.40547 11 1.95209 1.26591 2.31303 0.74007 12 u - - < 1.38629 1.38629 1.38629 1.38629 0.01088 7.65079 4.57101 1.46634 0.26236 0.17133 1.84861 12 1.75463 1.36450 1.82771 0.88980 13 u - - < 1.38629 1.38629 1.38629 1.38629 0.15146 1.96560 7.64552 0.00681 4.99221 0.08795 2.47459 13 1.35264 1.95443 1.85568 0.81317 15 u - - < 1.38629 1.38629 1.38629 1.38629 0.43206 1.04881 7.65539 0.00270 5.91560 1.09861 0.40547 14 1.54211 1.79600 1.06658 1.28762 17 g - - < 1.38629 1.38629 1.38629 1.38629 0.01492 7.65539 4.24517 1.46634 0.26236 1.09861 0.40547 15 2.74900 0.72098 1.87319 1.21706 18 c - - < 1.38629 1.38629 1.38629 1.38629 0.00096 7.64143 7.64143 1.46634 0.26236 0.06398 2.78105 16 7.07574 0.12082 7.08910 2.18809 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.00095 7.65539 7.65539 1.46634 0.26236 1.09861 0.40547 17 3.55954 7.90798 0.03977 4.58839 20 G - - - 1.38629 1.38629 1.38629 1.38629 0.00095 7.65539 7.65539 1.46634 0.26236 1.09861 0.40547 18 0.00122 8.16306 7.63309 7.70834 21 A - - - 1.38629 1.38629 1.38629 1.38629 0.00095 7.65539 7.65539 1.46634 0.26236 1.09861 0.40547 19 0.00122 8.16306 7.63309 7.70834 22 A - - - 1.38629 1.38629 1.38629 1.38629 0.00095 7.65539 7.65539 1.46634 0.26236 1.09861 0.40547 20 3.62729 3.49905 0.10994 3.05133 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.00095 7.65539 7.65539 1.46634 0.26236 1.09861 0.40547 21 3.18824 0.63779 1.64116 1.44164 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.00095 7.65539 7.65539 1.46634 0.26236 1.09861 0.40547 22 6.88640 0.12768 4.32389 2.24817 25 C - - < 1.38629 1.38629 1.38629 1.38629 0.00095 7.65539 7.65539 1.46634 0.26236 1.09861 0.40547 23 7.06855 0.66276 7.08266 0.72798 26 C - - < 1.38629 1.38629 1.38629 1.38629 0.00095 7.65539 7.65539 1.46634 0.26236 1.09861 0.40547 24 3.05741 1.56207 2.67136 0.39433 27 U - - < 1.38629 1.38629 1.38629 1.38629 0.00095 7.65539 7.65539 1.46634 0.26236 1.09861 0.40547 25 0.60783 6.02494 0.91272 2.96392 28 A - - < 1.38629 1.38629 1.38629 1.38629 0.00095 7.65539 7.65539 1.46634 0.26236 1.09861 0.40547 26 1.41422 0.41242 2.61338 3.83720 29 C - - < 1.38629 1.38629 1.38629 1.38629 0.00609 7.65539 5.18508 1.46634 0.26236 1.09861 0.40547 27 4.71759 3.88635 0.03844 4.79739 30 G - - < 1.38629 1.38629 1.38629 1.38629 0.00095 7.65025 7.65025 1.46634 0.26236 2.62656 0.07508 28 3.01253 1.95600 7.06954 0.21250 31 U - - < 1.38629 1.38629 1.38629 1.38629 0.00095 7.65025 7.65025 1.46634 0.26236 0.15625 1.93341 29 2.14763 3.61447 2.35359 0.27275 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00095 7.65539 7.65539 1.46634 0.26236 1.09861 0.40547 30 2.52618 0.35389 3.37469 1.69360 33 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01330 7.65539 4.36325 1.46634 0.26236 1.09861 0.40547 31 2.00502 0.30714 3.59246 2.28018 34 C - - _ 1.38629 1.38629 1.38629 1.38629 0.49376 0.95710 5.17274 0.19177 1.74581 0.07171 2.67071 32 0.30064 7.20623 1.53703 3.12594 38 A - - > 1.38629 1.38629 1.38629 1.38629 0.00095 7.65025 7.65025 1.46634 0.26236 2.62656 0.07508 33 7.33862 0.05536 3.88166 3.42385 39 C - - > 1.38629 1.38629 1.38629 1.38629 0.00095 7.65025 7.65025 1.46634 0.26236 0.15625 1.93341 34 3.89156 2.68373 0.40796 1.40131 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.00095 7.65539 7.65539 1.46634 0.26236 1.09861 0.40547 35 3.16250 0.90272 5.83318 0.59914 41 U - - > 1.38629 1.38629 1.38629 1.38629 0.00095 7.65539 7.65539 1.46634 0.26236 1.09861 0.40547 36 1.93069 2.17459 0.35055 3.29701 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.00095 7.65539 7.65539 1.46634 0.26236 1.09861 0.40547 37 1.10186 7.33543 0.40614 7.04070 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.00095 7.65539 7.65539 1.46634 0.26236 1.09861 0.40547 38 2.35521 4.34566 0.12228 4.92544 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.00695 7.65539 5.04300 1.46634 0.26236 1.09861 0.40547 39 1.12224 2.55559 0.64373 2.63844 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.00095 7.64939 7.64939 1.46634 0.26236 0.13690 2.05614 40 4.11839 2.62085 1.50910 0.37124 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.00095 7.65539 7.65539 1.46634 0.26236 1.09861 0.40547 41 0.30001 3.34663 1.65277 3.42753 47 A - - - 1.38629 1.38629 1.38629 1.38629 1.26786 0.54623 1.97012 1.50268 0.25171 1.09861 0.40547 42 3.32249 1.21449 3.38622 0.45691 89 U - - - 1.38629 1.38629 1.38629 1.38629 0.14770 7.50577 1.98955 1.46634 0.26236 0.00677 4.99890 43 2.69636 2.35723 1.58669 0.45687 90 U - - - 1.38629 1.38629 1.38629 1.38629 0.00107 7.53064 7.53064 1.46634 0.26236 5.52423 0.00400 44 0.71409 2.44928 3.16913 0.96242 91 a - - - 1.38629 1.38629 1.38629 1.38629 0.00107 7.53064 7.53064 1.46634 0.26236 3.15109 0.04375 45 1.50614 2.03440 3.67331 0.47468 92 U - - - 1.38629 1.38629 1.38629 1.38629 0.00107 7.53585 7.53585 1.46634 0.26236 3.15125 0.04374 46 3.02157 3.98051 0.15648 2.55806 93 G - - - 1.38629 1.38629 1.38629 1.38629 0.00106 7.54081 7.54081 1.46634 0.26236 0.00867 4.75208 47 8.87080 8.01082 9.83980 0.00053 94 U - - - 1.38629 1.38629 1.38629 1.38629 0.00095 7.65539 7.65539 1.46634 0.26236 1.09861 0.40547 48 0.00122 8.16306 7.63309 7.70834 95 A - - - 1.38629 1.38629 1.38629 1.38629 0.00095 7.65539 7.65539 1.46634 0.26236 1.09861 0.40547 49 5.87347 6.94030 0.01773 4.28354 96 G - - > 1.38629 1.38629 1.38629 1.38629 0.00095 7.65539 7.65539 1.46634 0.26236 1.09861 0.40547 50 1.88744 1.92104 0.46154 2.63420 97 G - - > 1.38629 1.38629 1.38629 1.38629 0.00095 7.65539 7.65539 1.46634 0.26236 1.09861 0.40547 51 1.37438 0.95376 1.77147 1.65218 98 c - - > 1.38629 1.38629 1.38629 1.38629 0.10218 2.33656 7.65539 0.00977 4.63349 1.09861 0.40547 52 0.76721 2.13287 1.42469 1.73379 100 a - - > 1.38629 1.38629 1.38629 1.38629 0.02425 3.96898 5.28496 0.04939 3.03258 1.09861 0.40547 53 0.98473 1.58993 1.18035 2.15980 102 a - - > 1.38629 1.38629 1.38629 1.38629 0.00095 7.65079 7.65079 1.46634 0.26236 0.17133 1.84861 54 0.94212 2.30256 1.07206 1.78442 103 a - - > 1.38629 1.38629 1.38629 1.38629 0.00095 7.65539 7.65539 1.46634 0.26236 1.09861 0.40547 55 1.41256 3.22767 0.42530 2.76049 104 G - - > 1.38629 1.38629 1.38629 1.38629 0.01419 4.29634 7.65539 0.06814 2.72004 1.09861 0.40547 56 3.63982 0.82072 3.42025 0.69130 106 U - - > 1.38629 1.38629 1.38629 1.38629 0.00095 7.65539 7.65539 1.46634 0.26236 1.09861 0.40547 57 3.34789 4.84782 0.07244 3.61651 107 G - - > 1.38629 1.38629 1.38629 1.38629 0.00095 7.65539 7.65539 1.46634 0.26236 1.09861 0.40547 58 3.58808 7.22436 0.03776 4.74679 108 G - - > 1.38629 1.38629 1.38629 1.38629 0.00095 7.65539 7.65539 1.46634 0.26236 1.09861 0.40547 59 2.36793 7.17850 0.11270 4.41061 109 G - - > 1.38629 1.38629 1.38629 1.38629 0.01829 4.03699 7.65539 0.05281 2.96727 1.09861 0.40547 60 1.98902 3.11353 0.25260 3.17140 111 G - - > 1.38629 1.38629 1.38629 1.38629 0.00496 7.65539 5.40973 1.46634 0.26236 1.09861 0.40547 61 2.84298 0.83860 1.50995 1.24302 112 c - - > 1.38629 1.38629 1.38629 1.38629 0.00095 7.65138 7.65138 1.46634 0.26236 2.43770 0.09142 62 1.39398 2.05559 1.53685 0.89443 113 u - - > 1.38629 1.38629 1.38629 1.38629 0.00095 7.65138 7.65138 1.46634 0.26236 2.43770 0.09142 63 1.70092 1.88221 2.11545 0.60761 114 U - - > 1.38629 1.38629 1.38629 1.38629 0.02651 7.65138 3.66188 1.46634 0.26236 2.43770 0.09142 64 1.78326 2.25983 2.22846 0.47828 115 U - - > 1.38629 1.38629 1.38629 1.38629 0.00049 7.62536 * 1.46634 0.26236 0.00000 * //