# STOCKHOLM 1.0
#=GF ID RT-19
#=GF AC RF03073
#=GF DE RT-19 RNA
#=GF AU Weinberg Z; 0000-0002-6681-3624
#=GF GA 78.3
#=GF NC 77.7
#=GF TC 82.9
#=GF SE Weinberg Z
#=GF SS Published; PMID:28977401;
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 25.58 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 28977401
#=GF RT Detection of 224 candidate structured RNAs by comparative analysis of
#=GF RT specific subsets of intergenic regions.
#=GF RA Weinberg Z, Lunse CE, Corbino KA, Ames TD, Nelson JW, Roth A, Perkins KR,
#=GF RA Sherlock ME, Breaker RR
#=GF RL Nucleic Acids Res. 2017;45:10811-10823.
#=GF CC Actinobacteria. Nearby to self-splicing intron genes
#=GF WK RT_RNA_motifs
#=GF SQ 23

URS0000D665BD_12908/1-112   AUUACCGUCGGCCACGA--UCUAAGCCAGACGGC-A-UGCCACGGCCAGAU---CCGAAAAUGCAACACGAGCACGCGGCCGGUAGAU--GAACCCAUCCAGCCACAUCGACAGCCGCGCA
URS0000D65871_12908/1-94    ACUACCUCCCGCA--CG---GGAAGCGAGGAGGC-ACAGCCCCGGCCAGUU---CCGAAAAUCAAA-CCGAGAAGGCGGCCGGUAGA---------------CGCA-UCGAAAGCCGC-CA
URS0000D6A46D_12908/1-94    ACUACCUCCCGCGU-----GGGAAGCGAGGAGGCCC-AGCCCCGGCCAGUU---CCGAAAAUCAAA-CCGAGAAGGCGGCCGGUAGA---------------CGCA-UCGAAAGCCGC-CA
URS0000D6B60E_1203540/1-109 ACUACCCUCCACG-CCA---GCCAGUGAGAGGGC-A-AGCCACGGCCCAG----CCGAAAAUCAAA-CCGAGCACCCGGCCAGUAGACCCGAACCCAUCCAGCACCGUCGAACGCCGG-CA
URS0000D6B60E_205913/1-109  ACUACCCUCCACG-CCA---GCCAGUGAGAGGGC-A-AGCCACGGCCCAG----CCGAAAAUCAAA-CCGAGCACCCGGCCAGUAGACCCGAACCCAUCCAGCACCGUCGAACGCCGG-CA
URS0000D6B60E_12908/1-109   ACUACCCUCCACG-CCA---GCCAGUGAGAGGGC-A-AGCCACGGCCCAG----CCGAAAAUCAAA-CCGAGCACCCGGCCAGUAGACCCGAACCCAUCCAGCACCGUCGAACGCCGG-CA
URS0000D66F8F_12908/1-107   ACUGCCCUCCACG-CCA---GCCAGUGAGAGGGC-A-AGCCACGGCCCAG----CCGAAAAUCAAA-CCGAGCACCCGGCCGGUAGGC--GAACCCAUCCAGCACCGUCGAACGCCGG-CA
URS0000D6B57C_12908/1-107   ACUACCCUCCACG-CCA---GCCAGUGAGAGGGC-A-AGCCACGGCCCAG----CCGAAAAUCAAA-CCGAGCACCCGGCCGGUAGGC--GAACCCAUCCAGCACCGUCGAACGCCGG-CA
URS0000D6B57C_411481/1-107  ACUACCCUCCACG-CCA---GCCAGUGAGAGGGC-A-AGCCACGGCCCAG----CCGAAAAUCAAA-CCGAGCACCCGGCCGGUAGGC--GAACCCAUCCAGCACCGUCGAACGCCGG-CA
URS0000D6B57C_1263059/1-107 ACUACCCUCCACG-CCA---GCCAGUGAGAGGGC-A-AGCCACGGCCCAG----CCGAAAAUCAAA-CCGAGCACCCGGCCGGUAGGC--GAACCCAUCCAGCACCGUCGAACGCCGG-CA
URS0000D67BFC_12908/1-109   ACUACCCUCCACG-CCA---GCCAGUGAGAGGGC-A-AGCCACGGCCCAG----CCGAAAAUCAAA-CCGAGCACCCGGCCAGUAGACCCGAACCCAUCCAGCACCGUCGGCAGCCGG-CA
URS0000D665C9_12908/1-107   ACUACCCUCCACG-CCA---GCCAGUGAGAGGGC-A-AGCCACGGCCCAG----CCGAAAAUCAAA-CCGAGCACCCGGCCGGUACCC--GAACCCCUCCAGCAACAGGGAACGCCGG-CA
URS0000D693BF_12908/1-106   ACUACCCUCCGUCA-----UGCCAACGAGAGGGC-A-CGCCUCGGCCCAG----CCGAAAAUCAAA-CCGAGCACGCGGCCGGUAGAC--GACCCACGCCAGCACCGUCGAACGCCGC-CA
URS0000D6C28D_12908/1-100   ACUACCCUCCGCU-------GCCCGCGAGAGGGC-C-AGCCACGGCAACCUAAGCCGAAAAUCAAA-CCAAGCACGCGACCGGUAGGC----------CAAGAUGAGCCGAACGCCGC-CA
URS0000D6B350_12908/1-97    ACUACCCUCCGCC-------GCCCGCGAGAGGGC-C-AGCCACGGCAACCUAAGCCGAAAAUCAAA-CCAAGCACGCGACCGGUAGAC------------CCCAA-GUCGAACGCCGC-CA
URS0000D658F7_12908/1-98    ACUACCCUCCGCC-------GCCCGCGAGAGGGC-C-AGCCACGGCAACCUAAGCCGAAAAUCAAA-CCAAGCACGCGACCGGUAGGC------------CCCAUGGCCGAACGCCGC-CA
URS0000D685C7_12908/1-97    ACUACCCUCCGCCUUGG-GGAUAUGCGAGAGGGC-U-UGCCUCGGCCAUG----CCGAAAAUCAAA-UCAAGAACGCGACCGGUAGCA--------------CAU-UGCGAACGCCGC-CA
URS0000D69B86_565040/1-98   ACUACCCUCCGCUUUCGGGGAUAUGCGAGAGGGC-A-AGCCUCGGCCAUG----CCGAAAAUCAAA-UCAAGCACGCGGCUGGUAGCA--------------CAU-UGCGAACGCCGC-CA
URS0000D6B4A9_12908/1-98    ACUACCCUCCGCUUUCGGGGAUAUGCGAGAGGGC-A-AGCCUCGGCCAUG----CCGAAAAUCGAA-UCAAGCACGCGGCUGGUAGCA--------------CAU-UGCGAACGCCGC-CA
URS0000D67B95_12908/1-101   ACUACCCUCCGCUUUCGGGGACACGCGAGAGGGC-A-AGCCUCGGCCAUG----CCGAAAAUCAAA-UCAAGCACGCGACCGGUAGGC------------CAUAAGGCCGAAAGCCGC-CA
URS0000D6C904_12908/1-101   ACUACCCUCCGCUUUCGGGGAUAUGCGAGAGGGC-A-AGCCUCGGCCAUG----CCGAAAAUCAAA-UCAAGCACGCGACCGGUAGGC------------CAUAAGGCCGAACGCCGC-CA
URS0000D6BD80_12908/1-101   ACUACCCUCCGCUUUCGGGGAUAUGCGAGAGGGC-A-AGCCUCGGCCAUG----CCGAAAAUCGAA-UCAAGCACGCGACCGGUAGGC------------CAUAAGGCCGAACGCCGC-CA
URS0000D676AC_12908/1-101   ACUACCCUCCGCUUUCGGGGAUAUGCGAGAGGGC-A-AGCCUCGGCCAUG----CCGAAAAUCGAA-UCAAGCACGCGACCGGUAGGC------------CACAUGGCCGAACGCCGC-CA
#=GC SS_cons                ::::<<<<<<<<_.___...____>>>->>>>>:.:.:::::::::::::....::::::::::::.::::::::<<<<<-----<<<..........________>>>---->>>>>.::
#=GC RF                     ACUACCcuCCGCu.uca...guaaGCGAGagGGC.a.AGCCaCGGCcaag....CCGAAAAUCAAA.cCgAGcACgCGGCCGGUAGgc..........CcagcaucgcCGAAcGCCGc.CA
//
