INFERNAL1/a [1.1.5 | Sep 2023] NAME Sodium ACC RF03071 DESC Na+ riboswitch aptamer (DUF1646) STATES 174 NODES 45 CLEN 55 W 81 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 8 09:10:36 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/14.9/check_fams/RF03071/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 146 EFFN 19.439636 CKSUM 3214629505 NULL 0.000 0.000 0.000 0.000 GA 40.50 TC 40.60 NC 40.40 EFP7GF -23.2625 0.72088 ECMLC 0.58551 -10.03443 0.74536 1600000 661158 0.001815 ECMGC 0.34564 -22.81735 -6.23560 1600000 123348 0.003243 ECMLI 0.58441 -8.67519 1.82097 1600000 553595 0.002168 ECMGI 0.36801 -18.53451 -3.72774 1600000 93017 0.004300 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 81 111 -9.526 -9.733 -0.009 -8.148 IL 1 1 2 1 4 4 20 84 113 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 4 20 83 113 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 3 19 81 111 -10.454 -0.004 -9.108 -4.821 -6.259 1.953 -3.638 D 4 2 3 5 3 1 17 80 109 -6.174 -1.687 -0.566 IL 5 5 3 5 3 3 19 82 112 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 2 2 18 80 110 -11.067 -0.001 -5.177 -6.851 1.981 -5.921 D 7 5 3 8 2 1 17 79 109 -8.445 -0.004 IL 8 8 3 8 2 2 18 81 110 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 3 ] - - - - - - B 9 8 3 10 90 1 17 79 109 [ BEGL 4 ] - - - - - - S 10 9 1 11 4 0 2 51 81 -0.013 -8.646 -8.053 -8.693 [ MATP 5 ] 3 43 U A - - MP 11 10 1 15 6 2 5 51 81 -10.642 -10.582 -0.007 -9.358 -9.638 -10.033 -8.658 -8.849 -8.013 -5.176 -6.373 -2.353 -2.135 -7.298 -7.974 -5.161 -8.236 -7.222 3.944 -8.356 -3.853 -5.508 ML 12 10 1 15 6 1 1 50 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 13 10 1 15 6 1 1 49 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 14 10 1 15 6 0 0 47 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 15 15 5 15 6 1 1 51 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 16 16 6 16 5 1 1 50 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 42 U A - - MP 17 16 6 21 6 2 4 49 79 -10.642 -10.582 -0.007 -9.358 -9.638 -10.033 -7.390 -7.612 -6.724 -3.849 -5.090 -6.884 0.113 -5.998 -6.817 -3.834 -6.949 -5.918 3.858 -7.241 -2.786 -5.573 ML 18 16 6 21 6 1 1 48 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 19 16 6 21 6 1 1 48 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 20 16 6 21 6 0 0 45 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 21 21 5 21 6 1 1 49 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 22 22 6 22 5 1 1 48 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 41 G C - - MP 23 22 6 27 4 2 3 47 77 -9.341 -10.587 -0.014 -7.040 -8.424 -5.210 -10.154 -2.623 -9.977 -6.416 -4.433 -9.831 -6.568 3.959 -6.775 -3.116 -4.799 -6.860 -6.829 -9.047 ML 24 22 6 27 4 1 1 46 76 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 25 22 6 27 4 1 1 46 76 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 26 22 6 27 4 0 0 44 74 -12.737 -14.007 -2.036 -0.404 IL 27 27 5 27 4 1 1 46 76 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 28 28 6 28 3 1 1 47 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 40 - U - - MR 29 28 6 31 3 1 1 45 75 -10.765 -0.648 -1.469 -3.091 -2.315 -4.307 1.860 D 30 28 6 31 3 0 0 44 73 -6.390 -1.568 -0.620 IR 31 31 3 31 3 1 1 46 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 39 - U - - MR 32 31 3 34 5 1 1 45 74 -8.792 -0.012 -8.608 -8.820 -9.711 -4.620 -4.212 -5.432 1.957 D 33 31 3 34 5 0 0 43 73 -8.662 -0.057 -6.289 -7.720 -5.714 IR 34 34 3 34 5 1 1 45 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 6 38 G U - - MP 35 34 3 39 6 2 2 44 73 -10.642 -10.582 -0.007 -9.358 -9.638 -10.033 -0.883 -5.002 -6.538 1.383 -8.648 -9.796 -4.109 -6.578 -6.097 -1.664 -6.765 3.619 -4.049 -7.838 -5.943 -5.136 ML 36 34 3 39 6 1 1 42 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 37 34 3 39 6 1 1 42 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 38 34 3 39 6 0 0 39 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 39 39 5 39 6 1 1 43 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 40 40 6 40 5 1 1 43 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 7 37 G C - - MP 41 40 6 45 6 2 2 42 71 -10.642 -10.582 -0.007 -9.358 -9.638 -10.033 -0.627 -2.264 -4.652 1.820 -5.759 -5.256 0.218 -5.332 -5.078 3.034 -5.333 0.454 -1.120 -4.514 -2.858 -3.619 ML 42 40 6 45 6 1 1 40 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 43 40 6 45 6 1 1 40 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 44 40 6 45 6 0 0 37 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 45 45 5 45 6 1 1 41 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 46 46 6 46 5 1 1 41 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 8 36 C G - - MP 47 46 6 51 6 2 2 40 69 -10.642 -10.582 -0.191 -9.358 -9.638 -3.062 -4.864 -4.633 -3.500 0.543 -3.878 -5.736 3.104 -4.508 -4.781 0.841 -5.301 -1.875 1.338 -5.069 -0.183 -3.553 ML 48 46 6 51 6 1 1 38 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 49 46 6 51 6 1 1 38 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 50 46 6 51 6 0 0 35 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 51 51 5 51 6 1 1 39 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 52 52 6 52 5 1 1 39 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 9 35 g c - - MP 53 52 6 57 6 2 2 38 67 -10.460 -10.399 -0.060 -9.176 -9.455 -4.782 -4.437 -3.465 -4.364 2.253 -4.629 -5.043 0.533 -4.735 -4.621 2.452 -4.985 -0.731 1.499 -4.318 -1.434 -3.311 ML 54 52 6 57 6 1 1 36 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 55 52 6 57 6 1 1 36 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 56 52 6 57 6 0 0 31 60 -11.820 -10.519 -6.316 -6.998 -7.015 -0.043 IL 57 57 5 57 6 1 1 37 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 58 58 6 58 5 1 1 37 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 10 34 g c - - MP 59 58 6 63 6 2 2 36 65 -10.408 -10.347 -0.245 -9.124 -9.404 -2.726 -4.561 -3.553 -4.486 2.229 -4.737 -5.196 0.278 -4.822 -4.715 2.368 -5.088 -1.002 1.901 -4.465 -2.155 -3.404 ML 60 58 6 63 6 1 1 35 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 61 58 6 63 6 1 1 34 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 62 58 6 63 6 0 0 30 60 -12.111 -10.809 -6.606 -7.288 -7.306 -0.035 IL 63 63 5 63 6 1 1 36 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 64 64 6 64 5 1 1 35 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 11 33 a u - - MP 65 64 6 69 4 2 2 34 63 -8.899 -9.106 -0.192 -3.052 -3.620 -3.406 -3.712 2.326 -3.333 -4.527 1.462 -3.782 -3.752 1.268 -4.268 -0.137 1.825 -3.827 -0.857 -2.692 ML 66 64 6 69 4 1 1 34 63 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 67 64 6 69 4 1 1 33 62 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 68 64 6 69 4 0 0 30 59 -8.347 -8.028 -6.044 -0.032 IL 69 69 5 69 4 1 1 35 64 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 70 70 6 70 3 1 1 34 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 12 - U - - - ML 71 70 6 73 3 1 1 32 62 -1.167 -0.904 -5.623 -1.538 -0.208 -2.611 1.393 D 72 70 6 73 3 0 0 30 59 -10.692 -0.044 -5.083 IL 73 73 3 73 3 1 1 32 61 -1.311 -0.765 -6.880 0.000 0.000 0.000 0.000 [ MATL 17 ] 18 - u - - - ML 74 73 3 76 3 1 1 30 59 -10.440 -0.004 -9.094 -0.023 -1.089 -0.136 0.710 D 75 73 3 76 3 0 0 28 57 -6.774 -0.876 -1.165 IL 76 76 3 76 3 1 1 31 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 19 - u - - - ML 77 76 3 79 3 1 1 29 58 -10.454 -0.004 -9.108 0.227 -0.848 -1.550 0.951 D 78 76 3 79 3 0 0 27 56 -6.174 -1.687 -0.566 IL 79 79 3 79 3 1 1 30 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 20 - a - - - ML 80 79 3 82 3 1 1 28 57 -10.454 -0.052 -4.839 0.747 -0.702 -0.908 0.232 D 81 79 3 82 3 0 0 25 54 -6.174 -1.687 -0.566 IL 82 82 3 82 3 1 1 29 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 21 - a - - - ML 83 82 3 85 3 1 1 27 56 -1.164 -1.949 -1.763 0.646 -1.267 -0.836 0.545 D 84 82 3 85 3 0 0 19 48 -7.618 -0.667 -1.453 IL 85 85 3 85 3 1 1 27 56 -0.904 -1.588 -2.910 0.000 0.000 0.000 0.000 [ MATL 21 ] 32 - A - - - ML 86 85 3 88 2 1 1 1 1 * 0.000 1.133 -2.613 0.347 -1.426 D 87 85 3 88 2 0 0 0 0 * 0.000 IL 88 88 3 88 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 22 ] - - - - - - E 89 88 3 -1 0 0 0 0 0 [ BEGR 23 ] - - - - - - S 90 9 1 91 3 0 1 43 61 -10.454 -0.004 -9.108 IL 91 91 2 91 3 1 1 47 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 44 - G - - - ML 92 91 2 94 3 1 2 43 61 -10.454 -0.004 -9.108 -2.870 -6.159 1.936 -5.424 D 93 91 2 94 3 0 0 42 61 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 46 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 45 - A - - - ML 95 94 3 97 3 1 2 42 60 -10.454 -0.004 -9.108 1.426 -1.592 -0.616 -1.605 D 96 94 3 97 3 0 0 41 60 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 45 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 46 - u - - - ML 98 97 3 100 3 1 1 41 59 -10.454 -0.004 -9.108 0.504 -1.106 -0.556 0.523 D 99 97 3 100 3 0 0 40 59 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 43 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 47 - u - - - ML 101 100 3 103 3 1 1 40 58 -10.454 -0.004 -9.108 0.403 -1.174 -1.579 0.926 D 102 100 3 103 3 0 0 39 57 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 42 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 48 - U - - - ML 104 103 3 106 3 1 1 39 57 -10.454 -0.380 -2.114 -0.454 -0.434 -1.568 1.133 D 105 103 3 106 3 0 0 38 56 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 42 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 49 - u - - - ML 107 106 3 109 3 1 1 38 56 -10.078 -0.421 -1.989 0.237 -1.157 -0.759 0.834 D 108 106 3 109 3 0 0 35 53 -9.864 -5.377 -0.037 IL 109 109 3 109 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 50 - u - - - ML 110 109 3 112 5 1 1 37 55 -0.861 -1.175 -8.476 -8.688 -9.580 0.164 -0.461 -0.857 0.679 D 111 109 3 112 5 0 0 33 51 -8.695 -0.124 -4.204 -6.331 -6.244 IL 112 112 3 112 5 1 1 37 55 -1.545 -0.633 -7.117 -8.949 -8.222 0.000 0.000 0.000 0.000 [ MATP 31 ] 55 77 g c - - MP 113 112 3 117 6 2 2 33 51 -10.616 -10.555 -0.007 -9.332 -9.611 -10.006 -4.483 -1.739 -4.386 1.663 -5.202 -5.030 -0.689 -5.000 -3.432 2.750 -5.061 1.198 0.704 -2.695 -2.597 -0.650 ML 114 112 3 117 6 1 1 32 49 -7.018 -7.364 -0.623 -1.773 -7.214 -4.743 0.814 -0.724 -0.688 0.022 MR 115 112 3 117 6 1 1 31 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 116 112 3 117 6 0 0 29 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 117 117 5 117 6 1 1 33 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 118 118 6 118 5 1 1 32 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 56 76 g c - - MP 119 118 6 123 6 2 2 31 49 -10.642 -10.582 -0.007 -9.358 -9.638 -10.033 -3.581 -0.635 -3.689 0.723 -3.624 -4.487 1.832 -3.963 -3.793 2.381 -4.303 -0.184 1.299 -3.776 -0.371 -1.868 ML 120 118 6 123 6 1 1 30 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 121 118 6 123 6 1 1 29 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 122 118 6 123 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 123 123 5 123 6 1 1 31 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 124 124 6 124 5 1 1 30 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 57 75 C G - - MP 125 124 6 129 6 2 2 29 47 -10.642 -10.582 -0.007 -9.358 -9.638 -10.033 -5.520 -5.303 -5.440 -1.200 -4.249 -6.144 3.007 -4.948 -5.346 -0.430 -2.476 -2.958 2.364 -5.670 0.080 -4.097 ML 126 124 6 129 6 1 1 28 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 127 124 6 129 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 128 124 6 129 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 129 129 5 129 6 1 1 29 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 130 130 6 130 5 1 1 28 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 58 74 U A - - MP 131 130 6 135 6 2 2 27 45 -10.642 -10.582 -0.007 -9.358 -9.638 -10.033 -7.296 -7.536 -6.648 -3.733 -2.817 -6.814 0.286 -5.923 -6.741 -3.680 -6.877 -5.845 3.755 -7.150 -0.191 -5.536 ML 132 130 6 135 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 133 130 6 135 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 134 130 6 135 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 135 135 5 135 6 1 1 27 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 136 136 6 136 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 59 73 u a - - MP 137 136 6 141 6 2 2 25 43 -10.642 -10.582 -0.007 -9.358 -9.638 -10.033 -4.752 -4.573 -3.320 0.747 -3.852 -5.632 1.856 -4.469 -4.703 0.228 -5.225 -2.308 2.914 -4.971 0.368 -3.512 ML 138 136 6 141 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 139 136 6 141 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 140 136 6 141 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 141 141 5 141 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 142 142 6 142 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 60 72 C G - - MP 143 142 6 147 6 2 2 23 41 -10.642 -10.582 -0.022 -9.358 -6.500 -10.033 -3.035 -4.501 -2.484 -0.656 -3.832 -5.478 3.036 -4.430 -1.760 -0.487 -5.122 -2.370 2.102 -4.836 0.047 -3.473 ML 144 142 6 147 6 1 1 21 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 145 142 6 147 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 146 142 6 147 6 0 0 19 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 147 147 5 147 6 1 1 23 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 148 148 6 148 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 61 71 u g - - MP 149 148 6 153 4 2 2 21 39 -2.783 -9.715 -0.290 -4.818 0.958 -5.466 -0.580 -1.954 -4.401 -5.915 1.365 -5.085 -5.343 -1.897 -5.762 -3.702 1.951 -5.563 2.612 -4.304 ML 150 148 6 153 4 1 1 19 37 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 151 148 6 153 4 1 1 19 37 -5.272 -4.301 -1.010 -1.229 0.036 -0.851 0.686 -0.301 D 152 148 6 153 4 0 0 18 36 -4.568 -4.250 -2.265 -0.520 IL 153 153 5 153 4 1 1 20 38 -2.016 -2.138 -0.944 -7.403 0.000 0.000 0.000 0.000 IR 154 154 6 154 3 1 1 19 37 -2.083 -0.459 -4.783 0.000 0.000 0.000 0.000 [ MATL 38 ] 64 - g - - - ML 155 154 6 157 3 1 1 17 35 -10.409 -0.004 -9.063 -0.278 -2.387 0.655 0.495 D 156 154 6 157 3 0 0 17 35 -7.561 -0.442 -1.953 IL 157 157 3 157 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 65 - G - - - ML 158 157 3 160 3 1 1 16 34 -10.454 -0.004 -9.108 -5.177 -6.851 1.981 -5.921 D 159 157 3 160 3 0 0 17 35 -6.174 -1.687 -0.566 IL 160 160 3 160 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 66 - G - - - ML 161 160 3 163 3 1 1 14 33 -10.454 -0.004 -9.108 -5.177 -6.851 1.981 -5.921 D 162 160 3 163 3 0 0 16 34 -6.174 -1.687 -0.566 IL 163 163 3 163 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 67 - G - - - ML 164 163 3 166 3 1 1 13 31 -10.454 -0.004 -9.108 -5.177 -6.851 1.981 -5.921 D 165 163 3 166 3 0 0 15 33 -6.174 -1.687 -0.566 IL 166 166 3 166 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 68 - U - - - ML 167 166 3 169 3 1 1 11 30 -10.454 -0.004 -9.108 -3.500 -2.130 -3.170 1.837 D 168 166 3 169 3 0 0 13 32 -6.174 -1.687 -0.566 IL 169 169 3 169 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 69 - G - - - ML 170 169 3 172 2 1 1 1 1 * 0.000 -3.414 -0.477 1.642 -3.909 D 171 169 3 172 2 0 0 0 0 * 0.000 IL 172 172 3 172 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 173 172 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Sodium ACC RF03071 DESC Na+ riboswitch aptamer (DUF1646) LENG 55 MAXL 107 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 8 09:10:36 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/14.9/check_fams/RF03071/CM NSEQ 146 EFFN 146.000000 CKSUM 3214629505 STATS LOCAL MSV -7.8189 0.72088 STATS LOCAL VITERBI -8.6784 0.72088 STATS LOCAL FORWARD -3.6149 0.72088 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.48275 1.92194 1.15534 1.16567 1.38629 1.38629 1.38629 1.38629 0.00135 7.30115 7.30115 1.46634 0.26236 0.00000 * 1 6.78672 7.98386 0.02169 3.91256 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.00135 7.30115 7.30115 1.46634 0.26236 1.09861 0.40547 2 6.79904 8.02832 0.00210 7.32655 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.00135 7.30115 7.30115 1.46634 0.26236 1.09861 0.40547 3 6.96341 3.23049 6.88299 0.04240 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.00135 7.30115 7.30115 1.46634 0.26236 1.09861 0.40547 4 6.94605 3.18798 6.88083 0.04421 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.00135 7.30115 7.30115 1.46634 0.26236 1.09861 0.40547 5 6.11058 7.20731 0.00369 7.23440 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.00135 7.30115 7.30115 1.46634 0.26236 1.09861 0.40547 6 1.67723 7.10691 0.20941 6.70137 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.00135 7.30115 7.30115 1.46634 0.26236 1.09861 0.40547 7 1.17680 2.75230 0.47880 4.77623 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.00135 7.30115 7.30115 1.46634 0.26236 1.09861 0.40547 8 2.48517 0.45909 2.23214 1.72861 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.17422 7.30115 1.83754 1.46634 0.26236 1.09861 0.40547 9 0.98778 2.84660 1.06836 1.48729 9 a - - < 1.38629 1.38629 1.38629 1.38629 0.05222 7.12854 2.99420 1.46634 0.26236 5.47205 0.00421 10 1.01676 3.37485 1.18309 1.21173 10 a - - < 1.38629 1.38629 1.38629 1.38629 0.24141 7.07801 1.54347 1.46634 0.26236 5.70177 0.00335 11 0.81658 2.07225 1.79647 1.32322 11 a - - < 1.38629 1.38629 1.38629 1.38629 0.13512 6.83874 2.07692 1.46634 0.26236 6.31298 0.00181 12 3.01886 1.48139 4.25204 0.34307 12 U - - _ 1.38629 1.38629 1.38629 1.38629 0.75053 0.68619 3.71335 0.52975 0.88856 0.00300 5.81061 13 1.49267 2.40794 1.41861 0.81379 18 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00137 7.28829 7.28829 1.46634 0.26236 0.09558 2.39516 14 1.22040 2.12367 2.91739 0.63258 19 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00135 7.30115 7.30115 1.46634 0.26236 1.09861 0.40547 15 0.78280 1.96649 2.16821 1.24291 20 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04123 7.30115 3.22606 1.46634 0.26236 1.09861 0.40547 16 0.86655 2.64424 2.09522 0.95322 21 a - - _ 1.38629 1.38629 1.38629 1.38629 1.19738 0.95689 1.15859 0.89724 0.52373 0.21229 1.65407 17 0.52085 5.66160 1.05780 2.89521 32 A - - _ 1.38629 1.38629 1.38629 1.38629 0.19970 6.93370 1.71453 1.46634 0.26236 1.60867 0.22334 18 1.37756 2.25797 1.97150 0.68519 33 U - - > 1.38629 1.38629 1.38629 1.38629 0.00215 6.83874 6.83874 1.46634 0.26236 0.77844 0.61456 19 1.21736 1.21860 3.33588 0.98681 34 u - - > 1.38629 1.38629 1.38629 1.38629 0.00169 7.07801 7.07801 1.46634 0.26236 1.56743 0.23393 20 1.55946 1.12896 2.61523 0.93336 35 u - - > 1.38629 1.38629 1.38629 1.38629 0.00161 7.12854 7.12854 1.46634 0.26236 0.00844 4.77890 21 2.04622 2.31155 0.37899 2.44049 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.00135 7.30115 7.30115 1.46634 0.26236 1.09861 0.40547 22 2.76252 0.61232 2.72912 1.11018 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.00135 7.30115 7.30115 1.46634 0.26236 1.09861 0.40547 23 3.31509 5.73635 6.97233 0.04134 38 U - - > 1.38629 1.38629 1.38629 1.38629 0.50381 7.30115 0.92861 1.46634 0.26236 1.09861 0.40547 24 7.68589 6.99352 8.49166 0.00158 39 U - - - 1.38629 1.38629 1.38629 1.38629 0.00223 6.79957 6.79957 1.46634 0.26236 0.00341 5.68280 25 4.22745 3.25532 6.13622 0.05691 40 U - - - 1.38629 1.38629 1.38629 1.38629 0.00135 7.30115 7.30115 1.46634 0.26236 1.09861 0.40547 26 7.23214 0.00467 7.11864 5.76749 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.00135 7.30115 7.30115 1.46634 0.26236 1.09861 0.40547 27 0.04547 6.98885 3.16314 6.69190 42 A - - > 1.38629 1.38629 1.38629 1.38629 0.00135 7.30115 7.30115 1.46634 0.26236 1.09861 0.40547 28 0.04374 3.36431 4.97059 6.67069 43 A - - > 1.38629 1.38629 1.38629 1.38629 0.00135 7.30115 7.30115 1.46634 0.26236 1.09861 0.40547 29 3.39656 7.96418 0.03513 7.28229 44 G - - - 1.38629 1.38629 1.38629 1.38629 0.00135 7.30115 7.30115 1.46634 0.26236 1.09861 0.40547 30 0.33946 2.68479 1.77934 2.97867 45 A - - - 1.38629 1.38629 1.38629 1.38629 0.00135 7.30115 7.30115 1.46634 0.26236 1.09861 0.40547 31 0.99124 2.42861 1.80919 0.97567 46 u - - - 1.38629 1.38629 1.38629 1.38629 0.00135 7.30115 7.30115 1.46634 0.26236 1.09861 0.40547 32 1.06614 2.48552 2.96130 0.65271 47 U - - - 1.38629 1.38629 1.38629 1.38629 0.00135 7.30115 7.30115 1.46634 0.26236 1.09861 0.40547 33 1.84253 1.71503 2.79885 0.50958 48 U - - - 1.38629 1.38629 1.38629 1.38629 0.28106 7.30115 1.40918 1.46634 0.26236 1.09861 0.40547 34 1.22731 2.59085 2.02450 0.69334 49 u - - - 1.38629 1.38629 1.38629 1.38629 0.32702 7.02187 1.28001 1.46634 0.26236 5.89748 0.00275 35 1.30705 1.77314 2.18449 0.80509 50 u - - - 1.38629 1.38629 1.38629 1.38629 1.05801 0.42829 6.69733 0.44610 1.02198 0.00297 5.82121 36 1.43747 4.60899 0.55046 1.73826 55 G - - < 1.38629 1.38629 1.38629 1.38629 0.00135 7.30115 7.30115 1.46634 0.26236 1.09861 0.40547 37 2.05379 1.42196 0.86648 1.56025 56 g - - < 1.38629 1.38629 1.38629 1.38629 0.00135 7.30115 7.30115 1.46634 0.26236 1.09861 0.40547 38 6.32576 0.59407 3.37787 0.88670 57 C - - < 1.38629 1.38629 1.38629 1.38629 0.00135 7.30115 7.30115 1.46634 0.26236 1.09861 0.40547 39 6.75188 2.90319 6.75554 0.05888 58 U - - < 1.38629 1.38629 1.38629 1.38629 0.00135 7.30115 7.30115 1.46634 0.26236 1.09861 0.40547 40 2.26798 1.65195 3.06122 0.41859 59 U - - < 1.38629 1.38629 1.38629 1.38629 0.00135 7.30115 7.30115 1.46634 0.26236 1.09861 0.40547 41 3.85153 0.50242 3.70932 1.05214 60 C - - < 1.38629 1.38629 1.38629 1.38629 0.01451 7.30115 4.28815 1.46634 0.26236 1.09861 0.40547 42 1.66714 2.03228 6.80692 0.38703 61 U - - < 1.38629 1.38629 1.38629 1.38629 0.20455 1.88494 3.40672 0.27303 1.43159 0.09375 2.41360 43 1.71089 5.26039 0.83585 0.96602 64 g - - _ 1.38629 1.38629 1.38629 1.38629 0.00140 7.26858 7.26858 1.46634 0.26236 0.04042 3.22856 44 6.79904 8.02832 0.00210 7.32655 65 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00135 7.30115 7.30115 1.46634 0.26236 1.09861 0.40547 45 6.79904 8.02832 0.00210 7.32655 66 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00135 7.30115 7.30115 1.46634 0.26236 1.09861 0.40547 46 6.79904 8.02832 0.00210 7.32655 67 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00135 7.30115 7.30115 1.46634 0.26236 1.09861 0.40547 47 5.60107 3.06868 3.86764 0.07374 68 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00135 7.30115 7.30115 1.46634 0.26236 1.09861 0.40547 48 6.84003 1.52877 0.24680 7.09469 69 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04810 3.07292 7.30115 0.02891 3.55814 1.09861 0.40547 49 0.95959 6.65744 0.48799 6.31605 71 G - - > 1.38629 1.38629 1.38629 1.38629 0.00135 7.30115 7.30115 1.46634 0.26236 1.09861 0.40547 50 1.14559 6.62148 0.38725 6.37231 72 G - - > 1.38629 1.38629 1.38629 1.38629 0.00135 7.30115 7.30115 1.46634 0.26236 1.09861 0.40547 51 0.55580 3.10242 1.26832 2.30114 73 A - - > 1.38629 1.38629 1.38629 1.38629 0.00135 7.30115 7.30115 1.46634 0.26236 1.09861 0.40547 52 0.10486 6.94126 2.33018 6.64444 74 A - - > 1.38629 1.38629 1.38629 1.38629 0.00135 7.30115 7.30115 1.46634 0.26236 1.09861 0.40547 53 1.05295 3.87939 0.46445 6.24076 75 G - - > 1.38629 1.38629 1.38629 1.38629 0.00135 7.30115 7.30115 1.46634 0.26236 1.09861 0.40547 54 1.87600 0.86613 1.25516 1.95762 76 c - - > 1.38629 1.38629 1.38629 1.38629 0.02596 7.30115 3.69094 1.46634 0.26236 1.09861 0.40547 55 2.14675 0.83010 4.62214 0.82714 77 u - - > 1.38629 1.38629 1.38629 1.38629 0.00069 7.27588 * 1.46634 0.26236 0.00000 * //