INFERNAL1/a [1.1.5 | Sep 2023] NAME ssNA-helicase ACC RF03070 DESC ssNA-helicase RNA STATES 151 NODES 40 CLEN 49 W 63 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 10 17:25:27 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03070/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 104 EFFN 13.015869 CKSUM 582359163 NULL 0.000 0.000 0.000 0.000 GA 41.50 TC 42.20 NC 41.30 EFP7GF -21.4891 0.71937 ECMLC 0.72306 -6.90687 2.11176 1600000 815115 0.001472 ECMGC 0.39694 -19.15083 -3.50411 1600000 199237 0.002008 ECMLI 0.51916 -9.61567 2.26581 1600000 572889 0.002095 ECMGI 0.43382 -14.62794 -1.40903 1600000 123757 0.003232 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 63 81 -8.825 -10.070 -0.020 -6.524 IL 1 1 2 1 4 1 11 65 83 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 13 65 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 61 - A - - MR 3 2 3 5 3 1 13 63 81 -10.255 -0.005 -8.572 1.918 -4.714 -2.831 -4.536 D 4 2 3 5 3 0 9 62 80 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 12 64 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 60 - C - - MR 6 5 3 8 3 1 13 62 80 -10.255 -0.005 -8.572 -2.788 1.903 -4.835 -3.627 D 7 5 3 8 3 0 8 61 79 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 11 63 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 59 - G - - MR 9 8 3 11 3 1 12 61 79 -10.255 -0.005 -8.572 -0.784 -3.151 1.572 -1.582 D 10 8 3 11 3 0 8 60 78 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 11 62 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 58 - A - - MR 12 11 3 14 3 1 11 60 78 -10.255 -0.005 -8.572 1.598 -1.042 -2.060 -2.019 D 13 11 3 14 3 0 7 59 77 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 10 61 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 57 - U - - MR 15 14 3 17 3 1 10 59 77 -10.255 -0.005 -8.572 -2.801 -2.390 -3.907 1.848 D 16 14 3 17 3 0 7 58 76 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 9 60 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 56 - G - - MR 18 17 3 20 3 1 9 58 76 -10.255 -0.340 -2.257 -2.869 -4.919 1.905 -3.573 D 19 17 3 20 3 0 6 57 75 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 10 59 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 55 - U - - MR 21 20 3 23 3 1 9 57 75 -9.921 -0.006 -8.238 -0.884 -1.342 -2.299 1.516 D 22 20 3 23 3 0 6 56 74 -9.283 -0.135 -3.513 IR 23 23 3 23 3 1 7 58 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 54 - A - - MR 24 23 3 26 3 1 9 56 74 -10.255 -0.005 -8.572 1.387 -2.597 -0.549 -0.900 D 25 23 3 26 3 0 2 55 73 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 6 57 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 53 - C - - MR 27 26 3 29 3 1 8 55 73 -10.255 -0.005 -8.572 -2.462 1.804 -4.290 -1.861 D 28 26 3 29 3 0 1 54 72 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 6 56 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 52 - G - - MR 30 29 3 32 3 1 7 54 72 -10.255 -0.005 -8.572 -0.709 -2.886 1.437 -0.876 D 31 29 3 32 3 0 1 53 71 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 5 55 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 51 - A - - MR 33 32 3 35 3 1 6 53 71 -10.255 -0.005 -8.572 1.705 -1.427 -2.108 -2.884 D 34 32 3 35 3 0 0 52 70 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 4 54 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 50 - U - - MR 36 35 3 38 3 1 5 52 70 -10.255 -0.005 -8.572 -3.105 -2.495 -3.097 1.844 D 37 35 3 38 3 0 0 51 69 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 3 53 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 49 - G - - MR 39 38 3 41 3 1 4 51 69 -10.255 -0.005 -8.572 -3.435 -5.824 1.949 -5.076 D 40 38 3 41 3 0 0 50 68 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 3 52 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 48 - U - - MR 42 41 3 44 3 1 3 50 68 -10.255 -0.005 -8.572 -0.687 -1.562 -1.296 1.397 D 43 41 3 44 3 0 0 49 67 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 2 51 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 47 - a - - MR 45 44 3 47 3 1 2 49 67 -10.255 -0.015 -6.695 0.933 -0.160 -1.076 -0.472 D 46 44 3 47 3 0 0 48 66 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 2 50 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 46 - u - - MR 48 47 3 50 3 1 1 48 66 -10.245 -0.091 -4.056 -0.207 -0.045 -1.496 0.856 D 49 47 3 50 3 0 0 47 65 -6.675 -1.132 -0.905 IR 50 50 3 50 3 1 1 49 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 45 - u - - MR 51 50 3 53 3 1 2 47 65 -10.170 -0.017 -6.501 0.315 -0.006 -1.113 0.376 D 52 50 3 53 3 0 0 46 64 -7.862 -1.594 -0.590 IR 53 53 3 53 3 1 1 48 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 44 - c - - MR 54 53 3 56 5 1 2 46 64 -3.160 -0.195 -8.670 -6.553 -9.774 0.148 0.553 -0.447 -0.532 D 55 53 3 56 5 0 0 45 63 -3.677 -0.473 -3.830 -5.261 -3.255 IR 56 56 3 56 5 1 1 46 64 -3.485 -0.288 -6.996 -3.818 -6.270 0.000 0.000 0.000 0.000 [ MATP 19 ] 1 42 u a - - MP 57 56 3 61 6 2 3 45 63 -6.198 -10.166 -0.028 -8.943 -9.222 -9.617 -2.691 -2.841 -2.866 0.652 -1.103 -3.717 1.165 -2.195 -2.139 0.566 -3.473 -0.881 2.876 -3.012 -0.534 -1.006 ML 58 56 3 61 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 3 61 6 1 1 44 63 -1.966 -6.132 -2.040 -6.110 -1.244 -4.323 0.492 -0.736 0.151 -0.180 D 60 56 3 61 6 0 0 41 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 44 63 -3.217 -3.480 -0.441 -5.135 -5.911 -5.572 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 3 41 u a - - MP 63 62 6 67 6 2 3 43 61 -10.246 -10.185 -0.010 -8.962 -9.241 -9.636 -2.813 -2.816 -2.968 1.024 -2.881 -3.020 1.539 -3.250 -1.969 2.014 -3.588 -0.268 2.051 -3.087 -0.918 -1.810 ML 64 62 6 67 6 1 1 42 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 39 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 43 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 4 40 c g - - MP 69 68 6 73 6 2 3 41 59 -10.246 -10.185 -0.010 -8.962 -9.241 -9.636 -4.468 -4.159 -4.489 0.230 -2.821 -5.313 2.809 -4.177 -4.415 1.974 -4.922 -1.157 1.249 -4.642 -1.090 -3.189 ML 70 68 6 73 6 1 1 40 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 37 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 41 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 5 39 C G - - MP 75 74 6 79 6 2 2 39 57 -10.246 -10.185 -0.028 -8.962 -9.241 -6.139 -5.953 -5.846 -5.642 -1.817 -4.236 -6.086 3.557 -5.036 -5.625 0.606 -5.937 -3.628 0.859 -5.996 -1.845 -4.391 ML 76 74 6 79 6 1 1 38 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 35 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 39 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 6 38 a u - - MP 81 80 6 85 6 2 2 37 55 -10.227 -10.166 -0.022 -8.943 -9.223 -6.731 -4.689 -4.316 -4.686 2.560 -3.870 -5.486 2.488 -4.433 -4.638 0.918 -5.121 -2.020 0.610 -4.879 -1.428 -3.450 ML 82 80 6 85 6 1 1 36 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 33 51 -9.616 -8.315 -4.112 -4.794 -4.811 -0.207 IL 85 85 5 85 6 1 1 37 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 7 37 U A - - MP 87 86 6 91 6 2 2 35 53 -5.402 -10.155 -0.079 -8.931 -9.211 -5.306 -4.890 -4.627 -4.862 1.273 -3.841 -5.635 1.284 -4.476 -4.774 0.254 -5.252 -2.312 3.163 -5.098 -1.394 -3.574 ML 88 86 6 91 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 33 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 32 50 -9.882 -8.580 -1.039 -5.059 -5.077 -1.152 IL 91 91 5 91 6 1 1 35 53 -3.148 -1.253 -1.328 -5.066 -5.842 -5.502 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 34 52 -2.779 -0.368 -6.290 -4.458 -5.564 0.000 0.000 0.000 0.000 [ MATP 25 ] 9 35 A U - - MP 93 92 6 97 6 2 2 33 51 -10.212 -10.151 -0.010 -8.927 -9.207 -9.602 -7.197 -5.925 -5.892 3.955 -8.701 -9.880 -4.394 -5.770 -6.963 -2.576 -7.584 -3.133 -4.642 -8.550 -6.255 -5.256 ML 94 92 6 97 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 31 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 30 48 -9.956 -8.655 -0.964 -5.134 -5.151 -1.227 IL 97 97 5 97 6 1 1 33 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 32 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 10 34 A U - - MP 99 98 6 103 6 2 2 31 49 -10.246 -10.185 -0.025 -8.962 -6.379 -9.636 -4.927 -3.706 -4.827 3.096 -5.436 -5.630 0.387 -5.206 -5.021 2.176 -5.389 -1.283 -0.545 -4.886 -2.762 -3.713 ML 100 98 6 103 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 30 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 11 33 G C - - MP 105 104 6 109 6 2 2 29 47 -10.231 -10.170 -0.064 -8.947 -6.274 -5.234 -6.546 -4.448 -6.798 1.059 -7.950 -6.073 -2.905 -7.132 -5.814 3.729 -6.120 -2.151 -3.162 -6.047 -5.007 -5.628 ML 106 104 6 109 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 27 46 -7.325 -6.054 -1.104 -6.032 -1.166 -4.246 -0.011 0.391 -0.708 0.116 D 108 104 6 109 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 28 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 12 32 G C - - MP 111 110 6 115 6 2 2 27 45 -10.193 -10.132 -0.398 -8.909 -6.453 -2.147 -7.818 -4.742 -9.175 -2.098 -9.278 -5.980 -3.859 -9.013 -6.096 3.941 -6.313 -2.628 -4.225 -6.394 -6.204 -8.031 ML 112 110 6 115 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 25 43 -7.347 -6.076 -1.985 -6.055 -1.188 -1.875 -0.031 0.422 -0.729 0.109 D 114 110 6 115 6 0 0 23 41 -10.000 -8.698 -4.495 -5.177 -5.195 -0.156 IL 115 115 5 115 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 13 31 G C - - MP 117 116 6 121 4 2 2 25 43 -1.752 -4.640 -0.958 -2.755 -6.430 -2.179 -6.729 -1.080 -7.528 -2.208 -2.399 -7.252 -5.486 3.840 -5.695 -1.883 -2.705 -5.453 -4.545 -5.708 ML 118 116 6 121 4 1 1 23 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 4 1 1 22 41 -5.159 -4.188 -1.134 -1.116 0.015 0.350 -0.679 0.125 D 120 116 6 121 4 0 0 23 41 -3.119 -1.212 -1.661 -2.867 IL 121 121 5 121 4 1 1 24 42 -2.169 -0.656 -2.864 -7.501 0.000 0.000 0.000 0.000 IR 122 122 6 122 3 1 1 22 41 -2.203 -0.659 -2.744 0.000 0.000 0.000 0.000 [ MATL 30 ] 18 - u - - - ML 123 122 6 125 3 1 1 21 39 -9.624 -0.006 -8.278 -0.696 0.163 -1.081 0.841 D 124 122 6 125 3 0 0 20 38 -9.184 -0.176 -3.146 IL 125 125 3 125 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 19 - U - - - ML 126 125 3 128 3 1 1 20 38 -9.927 -0.005 -8.581 -0.225 -0.751 -1.129 1.066 D 127 125 3 128 3 0 0 20 38 -6.478 -1.179 -0.870 IL 128 128 3 128 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 20 - A - - - ML 129 128 3 131 3 1 1 19 37 -9.936 -0.005 -8.590 1.975 -5.763 -5.181 -5.420 D 130 128 3 131 3 0 0 19 37 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 21 - G - - - ML 132 131 3 134 3 1 1 17 36 -9.936 -0.005 -8.590 -3.957 -3.696 1.933 -4.600 D 133 131 3 134 3 0 0 18 36 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 22 - U - - - ML 135 134 3 137 3 1 1 16 35 -9.936 -0.005 -8.590 -4.826 -4.400 -5.644 1.963 D 136 134 3 137 3 0 0 17 35 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 23 - A - - - ML 138 137 3 140 3 1 1 15 33 -9.936 -0.005 -8.590 1.884 -3.943 -3.015 -3.067 D 139 137 3 140 3 0 0 16 34 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 24 - U - - - ML 141 140 3 143 3 1 1 13 32 -9.936 -0.005 -8.590 -4.826 -4.400 -5.644 1.963 D 142 140 3 143 3 0 0 15 33 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 25 - U - - - ML 144 143 3 146 3 1 1 12 30 -9.936 -0.005 -8.590 -4.826 -4.400 -5.644 1.963 D 145 143 3 146 3 0 0 13 32 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 26 - A - - - ML 147 146 3 149 2 1 1 1 1 * 0.000 1.975 -5.763 -5.181 -5.420 D 148 146 3 149 2 0 0 0 0 * 0.000 IL 149 149 3 149 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 39 ] - - - - - - E 150 149 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME ssNA-helicase ACC RF03070 DESC ssNA-helicase RNA LENG 49 MAXL 102 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Jul 10 17:25:27 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03070/CM NSEQ 104 EFFN 56.700439 CKSUM 582359163 STATS LOCAL MSV -7.3845 0.71937 STATS LOCAL VITERBI -7.8642 0.71937 STATS LOCAL FORWARD -4.1103 0.71937 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.29090 1.58387 1.44239 1.26077 1.38629 1.38629 1.38629 1.38629 0.00250 6.68533 6.68533 1.46634 0.26236 0.00000 * 1 2.72463 2.07548 2.38919 0.33236 1 U - - < 1.38629 1.38629 1.38629 1.38629 0.02190 3.89178 6.68533 0.11821 2.19382 1.09861 0.40547 2 2.16793 1.74046 0.99729 1.07509 3 g - - < 1.38629 1.38629 1.38629 1.38629 0.00250 6.68533 6.68533 1.46634 0.26236 1.09861 0.40547 3 3.03362 0.65843 1.17834 2.06824 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.00250 6.68533 6.68533 1.46634 0.26236 1.09861 0.40547 4 5.77957 0.21225 2.37287 2.35458 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.02238 6.68533 3.86907 1.46634 0.26236 1.09861 0.40547 5 0.74881 0.96618 2.36141 2.95172 6 a - - < 1.38629 1.38629 1.38629 1.38629 0.01510 6.66550 4.28947 1.46634 0.26236 2.92928 0.05492 6 1.81140 2.43602 3.00883 0.35708 7 U - - < 1.38629 1.38629 1.38629 1.38629 0.07735 3.31565 3.26702 0.06961 2.69948 0.07282 2.65592 7 0.00738 6.24379 5.72198 6.14878 9 A - - < 1.38629 1.38629 1.38629 1.38629 0.00259 6.64902 6.64902 1.46634 0.26236 0.06550 2.75832 8 0.40517 2.67685 1.43789 3.61467 10 A - - < 1.38629 1.38629 1.38629 1.38629 0.01839 6.68533 4.07589 1.46634 0.26236 1.09861 0.40547 9 1.91949 6.18126 0.16374 6.07856 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.06009 6.66947 2.86376 1.46634 0.26236 0.13728 2.05357 10 5.12243 6.17826 0.01020 6.16033 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.37832 6.62885 1.15943 1.46634 0.26236 3.84924 0.02153 11 3.67155 3.76785 0.05308 5.75755 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.45426 1.59694 1.81666 0.36300 1.18938 0.09043 2.44803 12 2.26087 1.19740 2.28071 0.71019 18 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01123 6.54319 4.63288 1.46634 0.26236 0.01851 3.99890 13 1.65083 2.03645 2.35835 0.53950 19 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00252 6.67811 6.67811 1.46634 0.26236 0.25934 1.47649 14 0.00397 6.95884 6.45329 6.54687 20 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00250 6.68533 6.68533 1.46634 0.26236 1.09861 0.40547 15 5.81016 3.98473 0.02372 6.29586 21 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00250 6.68533 6.68533 1.46634 0.26236 1.09861 0.40547 16 7.00410 6.42437 7.72559 0.00298 22 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00250 6.68533 6.68533 1.46634 0.26236 1.09861 0.40547 17 0.04990 5.40654 3.83306 3.79208 23 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00250 6.68533 6.68533 1.46634 0.26236 1.09861 0.40547 18 7.00410 6.42437 7.72559 0.00298 24 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00250 6.68533 6.68533 1.46634 0.26236 1.09861 0.40547 19 7.00410 6.42437 7.72559 0.00298 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00250 6.68533 6.68533 1.46634 0.26236 1.09861 0.40547 20 0.00397 6.95884 6.45329 6.54687 26 A - - _ 1.38629 1.38629 1.38629 1.38629 0.49621 1.48990 1.79715 0.34311 1.23636 1.09861 0.40547 21 5.02917 0.02878 5.25669 4.09786 31 C - - > 1.38629 1.38629 1.38629 1.38629 0.04969 6.50558 3.05799 1.46634 0.26236 0.01496 4.20999 22 5.43490 0.01938 5.66368 4.47713 32 C - - > 1.38629 1.38629 1.38629 1.38629 0.00260 6.64658 6.64658 1.46634 0.26236 0.06170 2.81614 23 5.53169 0.17064 5.72868 1.89934 33 C - - > 1.38629 1.38629 1.38629 1.38629 0.00250 6.68533 6.68533 1.46634 0.26236 1.09861 0.40547 24 3.67133 1.45638 2.65420 0.39880 34 U - - > 1.38629 1.38629 1.38629 1.38629 0.03890 6.68533 3.29936 1.46634 0.26236 1.09861 0.40547 25 6.51944 6.20165 6.16986 0.00561 35 U - - > 1.38629 1.38629 1.38629 1.38629 0.07338 3.31168 3.37277 0.06961 2.69948 0.06550 2.75832 26 0.36269 3.04620 2.39706 1.79775 37 A - - > 1.38629 1.38629 1.38629 1.38629 0.00258 6.65299 6.65299 1.46634 0.26236 0.97304 0.47471 27 3.02681 2.38612 0.95712 0.74329 38 u - - > 1.38629 1.38629 1.38629 1.38629 0.00255 6.66550 6.66550 1.46634 0.26236 0.11302 2.23613 28 2.38394 2.37652 0.20964 5.50596 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.00250 6.68533 6.68533 1.46634 0.26236 1.09861 0.40547 29 2.09722 1.24926 0.65398 2.65196 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.00250 6.68533 6.68533 1.46634 0.26236 1.09861 0.40547 30 1.07759 1.16795 1.72613 1.76838 41 a - - > 1.38629 1.38629 1.38629 1.38629 0.00250 6.68533 6.68533 1.46634 0.26236 1.09861 0.40547 31 0.34529 2.79487 2.26780 2.06101 42 A - - > 1.38629 1.38629 1.38629 1.38629 0.18388 2.10315 3.08144 0.02034 3.90527 1.09861 0.40547 32 1.30993 0.84243 1.68322 2.17399 44 c - - : 1.38629 1.38629 1.38629 1.38629 0.03325 6.63965 3.46100 1.46634 0.26236 1.57075 0.23305 33 1.14689 1.32734 2.42855 1.11160 45 u - - : 1.38629 1.38629 1.38629 1.38629 0.01123 6.61857 4.62185 1.46634 0.26236 0.03725 3.30874 34 1.62715 1.38763 2.82173 0.70453 46 u - - : 1.38629 1.38629 1.38629 1.38629 0.00252 6.67734 6.67734 1.46634 0.26236 0.24025 1.54381 35 0.64079 1.43142 2.32846 1.98989 47 A - - : 1.38629 1.38629 1.38629 1.38629 0.00250 6.68533 6.68533 1.46634 0.26236 1.09861 0.40547 36 2.01538 2.89801 2.39144 0.32836 48 U - - : 1.38629 1.38629 1.38629 1.38629 0.00250 6.68533 6.68533 1.46634 0.26236 1.09861 0.40547 37 4.03730 7.04852 0.02041 6.38353 49 G - - : 1.38629 1.38629 1.38629 1.38629 0.00250 6.68533 6.68533 1.46634 0.26236 1.09861 0.40547 38 4.73028 3.63158 3.85991 0.05802 50 U - - : 1.38629 1.38629 1.38629 1.38629 0.00250 6.68533 6.68533 1.46634 0.26236 1.09861 0.40547 39 0.15966 2.36595 3.09651 4.76734 51 A - - : 1.38629 1.38629 1.38629 1.38629 0.00250 6.68533 6.68533 1.46634 0.26236 1.09861 0.40547 40 1.97766 4.68485 0.33360 1.99483 52 G - - : 1.38629 1.38629 1.38629 1.38629 0.00250 6.68533 6.68533 1.46634 0.26236 1.09861 0.40547 41 3.26952 0.09633 5.64133 2.99040 53 C - - : 1.38629 1.38629 1.38629 1.38629 0.00250 6.68533 6.68533 1.46634 0.26236 1.09861 0.40547 42 0.34684 4.86698 1.75619 2.18318 54 A - - : 1.38629 1.38629 1.38629 1.38629 0.26962 6.68533 1.44782 1.46634 0.26236 1.09861 0.40547 43 2.11943 2.60253 3.64235 0.24894 55 U - - : 1.38629 1.38629 1.38629 1.38629 0.00327 6.41897 6.41897 1.46634 0.26236 0.01057 4.55493 44 3.69985 6.35123 0.04236 4.19933 56 G - - : 1.38629 1.38629 1.38629 1.38629 0.00250 6.68533 6.68533 1.46634 0.26236 1.09861 0.40547 45 3.92309 3.43893 5.26028 0.05877 57 U - - : 1.38629 1.38629 1.38629 1.38629 0.00250 6.68533 6.68533 1.46634 0.26236 1.09861 0.40547 46 0.22182 2.09432 3.12286 3.44960 58 A - - : 1.38629 1.38629 1.38629 1.38629 0.00250 6.68533 6.68533 1.46634 0.26236 1.09861 0.40547 47 1.99374 4.81144 0.24544 2.61292 59 G - - : 1.38629 1.38629 1.38629 1.38629 0.00250 6.68533 6.68533 1.46634 0.26236 1.09861 0.40547 48 3.32129 0.04421 5.97946 5.37851 60 C - - : 1.38629 1.38629 1.38629 1.38629 0.00250 6.68533 6.68533 1.46634 0.26236 1.09861 0.40547 49 0.03436 6.33381 3.51255 6.12654 61 A - - : 1.38629 1.38629 1.38629 1.38629 0.00125 6.68408 * 1.46634 0.26236 0.00000 * //