INFERNAL1/a [1.1.5 | Sep 2023] NAME terC ACC RF03067 DESC terC RNA STATES 181 NODES 46 CLEN 59 W 109 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 05:24:38 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03067/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 129 EFFN 19.522430 CKSUM 203673858 NULL 0.000 0.000 0.000 0.000 GA 39.90 TC 40.10 NC 39.60 EFP7GF -22.7137 0.72043 ECMLC 0.54259 -6.01153 3.25658 1600000 183298 0.006547 ECMGC 0.43983 -16.91687 -4.41911 1600000 97568 0.004100 ECMLI 0.52330 -5.35100 3.66031 1600000 134014 0.008954 ECMGI 0.44389 -14.35665 -2.39604 1600000 80879 0.004946 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 109 165 -9.532 -9.739 -0.009 -8.153 IL 1 1 2 1 4 1 18 111 167 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 17 111 167 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - a - - - ML 3 2 3 5 3 1 17 109 165 -10.460 -0.004 -9.114 0.215 0.147 -0.051 -0.382 D 4 2 3 5 3 0 10 107 163 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 16 110 166 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - c - - - ML 6 5 3 8 3 1 16 108 164 -10.460 -0.004 -9.114 0.147 0.250 -0.599 0.061 D 7 5 3 8 3 0 9 106 162 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 15 109 165 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - u - - - ML 9 8 3 11 3 1 15 107 163 -10.460 -0.004 -9.114 -0.247 -0.242 0.139 0.276 D 10 8 3 11 3 0 7 105 161 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 14 108 164 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - c - - - ML 12 11 3 14 3 1 14 106 162 -10.460 -0.004 -9.114 -0.700 0.327 -0.160 0.304 D 13 11 3 14 3 0 6 104 160 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 13 107 163 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - g - - - ML 15 14 3 17 3 1 13 105 161 -10.770 -0.003 -9.088 -0.727 0.262 0.535 -0.418 D 16 14 3 17 3 0 5 104 159 -5.620 -0.734 -1.403 IL 17 17 3 17 3 1 11 106 161 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 105 - g - - MR 18 17 3 20 3 1 12 104 160 -10.770 -0.003 -9.088 -0.176 -0.329 0.513 -0.165 D 19 17 3 20 3 0 4 102 158 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 10 105 160 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 104 - c - - MR 21 20 3 23 3 1 12 103 159 -10.770 -0.003 -9.088 -0.682 0.446 -0.214 0.205 D 22 20 3 23 3 0 4 101 157 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 8 104 159 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 103 - u - - MR 24 23 3 26 3 1 11 102 158 -10.770 -0.003 -9.088 0.060 -0.059 -2.089 0.817 D 25 23 3 26 3 0 4 100 156 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 7 103 158 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 102 - a - - MR 27 26 3 29 3 1 10 101 157 -10.770 -0.003 -9.088 0.519 0.153 -1.349 0.088 D 28 26 3 29 3 0 3 99 155 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 6 102 157 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 101 - c - - MR 30 29 3 32 3 1 9 100 156 -10.770 -0.003 -9.088 -0.432 0.652 -0.020 -0.512 D 31 29 3 32 3 0 3 98 154 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 6 101 156 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 100 - g - - MR 33 32 3 35 5 1 8 99 155 -9.429 -0.008 -9.245 -9.457 -10.349 -0.954 0.399 0.485 -0.386 D 34 32 3 35 5 0 2 98 153 -5.352 -0.707 -2.978 -4.409 -2.404 IR 35 35 3 35 5 1 5 99 155 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 6 99 G C - - MP 36 35 3 40 6 2 7 98 154 -10.647 -10.586 -0.015 -9.363 -9.642 -7.275 -4.772 -3.461 -1.149 1.618 -5.667 -5.213 -0.821 -5.281 -3.267 3.156 -3.329 0.395 -0.206 -4.473 -1.800 -3.584 ML 37 35 3 40 6 1 4 96 152 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 3 40 6 1 4 96 152 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 3 40 6 0 0 93 148 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 5 98 153 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 5 97 153 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 7 98 g c - - MP 42 41 6 46 6 2 8 96 152 -6.896 -10.578 -0.127 -3.773 -9.634 -10.029 -4.524 -1.819 -4.435 1.409 -5.057 -5.090 1.053 -4.970 -3.249 2.885 -5.094 -0.529 1.181 -4.357 -2.473 -3.434 ML 43 41 6 46 6 1 4 95 150 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 3 94 150 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 0 91 147 -9.395 -8.093 -3.890 -4.572 -1.973 -0.665 IL 46 46 5 46 6 1 5 96 151 -2.867 -3.130 -0.590 -4.785 -5.561 -5.221 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 5 96 151 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 9 97 u a - - MP 48 47 6 52 6 2 9 94 150 -10.532 -10.471 -0.008 -9.247 -9.527 -9.922 0.421 -2.489 -2.473 0.387 -1.686 -3.325 0.806 -1.882 0.828 0.312 -1.508 0.837 2.025 -2.614 -0.186 -1.742 ML 49 47 6 52 6 1 5 93 149 -8.158 -8.504 -0.250 -2.912 -8.353 -5.883 1.254 -1.288 -0.893 -0.583 MR 50 47 6 52 6 1 3 92 148 -7.232 -5.961 -1.219 -5.939 -1.073 -4.153 0.802 -0.689 -0.411 -0.178 D 51 47 6 52 6 0 0 89 144 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 4 94 149 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 4 94 149 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 10 96 C G - - MP 54 53 6 58 6 2 8 92 148 -10.647 -10.586 -0.007 -9.363 -9.642 -10.037 -7.318 -7.490 -1.470 -3.651 -5.079 -6.858 3.786 -6.021 -6.804 -3.576 -0.525 -5.676 -0.473 -7.208 -2.815 -5.600 ML 55 53 6 58 6 1 3 91 146 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 2 90 146 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 0 87 142 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 4 92 147 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 4 92 147 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 95 C G - - MP 60 59 6 64 6 2 7 90 146 -10.647 -10.586 -0.007 -9.363 -9.642 -10.037 -9.376 -9.595 -7.740 -5.940 -6.035 -7.502 3.983 -8.082 -8.902 -5.912 -7.541 -7.973 -3.904 -9.292 -4.881 -7.703 ML 61 59 6 64 6 1 2 89 144 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 2 88 144 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 0 85 141 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 3 90 145 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 3 90 145 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 94 G C - - MP 66 65 6 70 6 2 6 88 144 -10.647 -7.705 -0.013 -9.363 -9.642 -10.037 -8.429 -5.215 -10.162 -2.627 -9.983 -6.420 -4.438 -9.838 -6.572 3.960 -6.780 -3.120 -4.804 -6.865 -6.835 -9.056 ML 67 65 6 70 6 1 2 87 143 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 2 87 142 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 0 84 140 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 3 88 143 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 3 88 143 -2.508 -0.457 -6.020 -4.187 -5.293 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 92 G U - - MP 72 71 6 76 4 2 5 86 142 -9.532 -9.739 -0.029 -5.837 -6.351 -5.013 -6.544 -0.682 -8.622 -9.801 -4.091 -6.583 -6.106 -0.866 -6.774 3.865 -4.046 -7.846 -5.927 -5.143 ML 73 71 6 76 4 1 1 86 141 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 4 1 1 85 141 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 75 71 6 76 4 0 0 84 139 -4.568 -4.250 -2.265 -0.520 IL 76 76 5 76 4 1 2 87 142 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 77 77 6 77 3 1 2 86 142 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - G - - - ML 78 77 6 80 3 1 4 85 140 -10.440 -0.004 -9.094 -3.044 -5.063 1.893 -2.890 D 79 77 6 80 3 0 0 83 138 -6.956 -0.739 -1.348 IL 80 80 3 80 3 1 1 85 141 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - C - - - ML 81 80 3 83 3 1 3 84 139 -10.460 -0.004 -9.114 -5.797 1.977 -6.257 -4.905 D 82 80 3 83 3 0 0 81 137 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 1 84 140 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - C - - - ML 84 83 3 86 3 1 2 83 138 -10.460 -0.012 -6.993 -5.277 1.940 -5.734 -3.079 D 85 83 3 86 3 0 0 80 136 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 1 83 139 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - C - - - ML 87 86 3 89 3 1 3 82 137 -10.451 -0.004 -9.105 -5.787 1.976 -6.248 -4.896 D 88 86 3 89 3 0 0 80 135 -6.569 -1.072 -0.961 IL 89 89 3 89 3 1 1 82 138 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 18 - C - - - ML 90 89 3 92 3 1 2 81 136 -10.460 -0.004 -9.114 -5.025 1.896 -5.589 -2.134 D 91 89 3 92 3 0 0 78 134 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 1 81 137 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 19 - U - - - ML 93 92 3 95 3 1 2 80 135 -10.460 -0.004 -9.114 -5.653 -5.152 -6.505 1.979 D 94 92 3 95 3 0 0 77 133 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 1 80 136 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 20 - C - - - ML 96 95 3 98 3 1 2 79 134 -10.460 -0.004 -9.114 -5.797 1.977 -6.257 -4.905 D 97 95 3 98 3 0 0 76 132 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 1 79 135 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 21 - U - - - ML 99 98 3 101 3 1 1 78 133 -7.232 -0.012 -9.114 -5.653 -5.152 -6.505 1.979 D 100 98 3 101 3 0 0 76 131 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 1 78 134 -1.550 -0.723 -4.250 0.000 0.000 0.000 0.000 [ MATL 27 ] 23 - G - - - ML 102 101 3 104 3 1 1 77 132 -10.770 -0.003 -9.088 -4.717 -4.088 1.956 -5.380 D 103 101 3 104 3 0 0 75 130 -5.620 -0.734 -1.403 IL 104 104 3 104 3 1 1 77 132 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 91 - G - - MR 105 104 3 107 3 1 1 76 131 -10.770 -0.003 -9.088 -5.183 -6.857 1.981 -5.927 D 106 104 3 107 3 0 0 73 129 -6.390 -1.568 -0.620 IR 107 107 3 107 3 1 1 76 131 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 90 - U - - MR 108 107 3 110 3 1 1 75 130 -10.770 -0.003 -9.088 -5.653 -5.152 -6.505 1.979 D 109 107 3 110 3 0 0 72 128 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 1 75 130 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 89 - A - - MR 111 110 3 113 3 1 1 74 129 -10.770 -0.003 -9.088 1.984 -6.455 -5.832 -6.033 D 112 110 3 113 3 0 0 71 127 -6.390 -1.568 -0.620 IR 113 113 3 113 3 1 1 74 129 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 88 - G - - MR 114 113 3 116 5 1 1 73 128 -9.429 -0.008 -9.245 -9.457 -10.349 -3.817 -1.474 1.816 -4.373 D 115 113 3 116 5 0 0 71 126 -5.352 -0.707 -2.978 -4.409 -2.404 IR 116 116 3 116 5 1 1 73 128 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 24 87 g c - - MP 117 116 3 121 6 2 2 72 127 -10.647 -10.586 -0.007 -9.363 -9.642 -10.037 -5.846 0.924 -5.856 1.289 -7.360 -7.104 -2.530 -6.209 -5.802 2.580 -6.286 2.368 -2.706 -6.187 -4.495 -4.640 ML 118 116 3 121 6 1 1 69 125 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 3 121 6 1 1 69 125 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 3 121 6 0 0 65 121 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 71 126 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 71 126 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 25 86 C G - - MP 123 122 6 127 6 2 2 70 125 -10.647 -10.586 -0.007 -9.363 -9.642 -10.037 -7.231 -7.432 -6.613 -3.595 -4.997 -6.800 3.775 -1.446 -6.697 -3.523 -6.847 -5.663 -0.201 -7.102 -0.369 -5.492 ML 124 122 6 127 6 1 1 68 123 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 67 123 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 64 119 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 69 124 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 69 124 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 26 85 G C - - MP 129 128 6 133 6 2 2 68 123 -10.647 -10.586 -0.016 -9.363 -9.642 -7.093 -5.134 -3.738 -4.986 1.777 -6.144 -5.571 -0.455 -5.628 -5.306 3.296 -5.584 0.283 -1.475 -4.858 -3.224 -3.929 ML 130 128 6 133 6 1 1 66 121 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 65 121 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 62 118 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 67 122 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 67 122 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 27 84 g c - - MP 135 134 6 139 6 2 2 66 121 -6.389 -10.577 -0.051 -6.122 -9.633 -7.307 -4.564 -3.430 -4.456 2.459 -5.248 -1.959 0.030 -3.203 -4.814 2.733 -5.127 -0.697 0.152 -4.359 -1.612 -3.460 ML 136 134 6 139 6 1 1 64 119 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 63 119 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 61 116 -9.443 -8.141 -1.718 -4.620 -4.637 -0.713 IL 139 139 5 139 6 1 1 65 120 -2.220 -3.396 -0.689 -5.052 -5.828 -5.488 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 65 120 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 30 83 g c - - MP 141 140 6 145 6 2 2 64 119 -4.148 -4.846 -0.239 -9.336 -9.616 -4.091 -3.081 -3.144 -2.063 0.858 -3.098 -4.083 1.450 -2.710 -3.303 2.227 -3.856 -0.999 1.753 -3.375 0.659 -1.958 ML 142 140 6 145 6 1 1 63 118 -2.649 -7.174 -1.154 -1.583 -7.024 -4.553 0.502 -0.131 -0.622 0.030 MR 143 140 6 145 6 1 1 61 117 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 56 111 -9.385 -8.083 -3.880 -4.562 -4.579 -0.247 IL 145 145 5 145 6 1 1 64 119 -1.838 -1.318 -1.785 -6.328 -7.104 -6.764 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 63 118 -3.648 -0.190 -7.159 -5.327 -6.433 0.000 0.000 0.000 0.000 [ MATP 37 ] 33 81 c g - - MP 147 146 6 151 6 2 2 62 117 -10.554 -10.494 -0.149 -7.089 -6.903 -3.619 -3.748 -3.711 -3.872 1.885 -3.428 -4.710 2.189 -3.914 -3.882 1.414 -4.423 -0.581 1.366 -4.013 0.004 -2.059 ML 148 146 6 151 6 1 1 60 116 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 6 1 1 59 115 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 6 151 6 0 0 52 107 -11.067 -9.766 -5.563 -6.245 -6.262 -0.072 IL 151 151 5 151 6 1 1 61 117 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 61 116 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 34 80 g c - - MP 153 152 6 157 6 2 2 60 115 -10.413 -10.353 -0.203 -5.666 -9.409 -3.200 -3.109 -2.872 -3.227 1.527 -1.747 -4.017 1.316 -3.626 -3.365 2.630 -1.319 -0.089 0.362 -1.900 -1.127 -2.408 ML 154 152 6 157 6 1 1 59 115 -6.522 -6.868 -0.983 -1.277 -6.718 -4.248 0.061 -0.388 -0.533 0.587 MR 155 152 6 157 6 1 1 57 113 -7.276 -6.005 -1.163 -5.983 -1.117 -4.197 0.032 0.322 -0.660 0.131 D 156 152 6 157 6 0 0 49 104 -12.005 -10.703 -6.500 -7.182 -7.200 -0.037 IL 157 157 5 157 6 1 1 59 115 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 59 115 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 35 79 c g - - MP 159 158 6 163 4 2 2 58 114 -2.361 -1.311 -1.332 -7.617 -2.211 -2.413 -0.985 1.466 -0.615 -3.257 1.693 -1.743 -2.467 0.933 -3.039 -0.787 1.406 -2.547 1.076 -1.656 ML 160 158 6 163 4 1 1 59 114 -1.489 -4.465 -1.031 -3.194 0.521 -0.564 -0.628 0.312 MR 161 158 6 163 4 1 1 52 108 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 162 158 6 163 4 0 0 48 102 -8.096 -2.459 -0.407 -4.048 IL 163 163 5 163 4 1 1 61 116 -0.491 -1.954 -5.138 -8.875 0.000 0.000 0.000 0.000 IR 164 164 6 164 3 1 1 51 104 -0.501 -1.780 -8.699 0.000 0.000 0.000 0.000 [ MATL 40 ] 46 - u - - - ML 165 164 6 167 3 1 1 16 34 -10.460 -0.004 -9.114 -0.431 -0.819 0.214 0.615 D 166 164 6 167 3 0 0 16 35 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 47 - u - - - ML 168 167 3 170 3 1 1 14 33 -10.460 -0.004 -9.114 -0.322 -0.175 -0.154 0.501 D 169 167 3 170 3 0 0 15 34 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 48 - c - - - ML 171 170 3 173 3 1 1 13 31 -10.460 -0.061 -4.628 -0.492 0.702 -0.645 0.033 D 172 170 3 173 3 0 0 14 33 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 49 - g - - - ML 174 173 3 176 3 1 1 11 30 -10.403 -0.666 -1.437 -0.274 -0.056 0.165 0.125 D 175 173 3 176 3 0 0 12 31 -7.766 -2.332 -0.328 IL 176 176 3 176 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 50 - g - - - ML 177 176 3 179 2 1 1 1 1 * 0.000 0.003 0.120 0.355 -0.661 D 178 176 3 179 2 0 0 0 0 * 0.000 IL 179 179 3 179 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 45 ] - - - - - - E 180 179 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME terC ACC RF03067 DESC terC RNA LENG 59 MAXL 118 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 05:24:38 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03067/CM NSEQ 129 EFFN 114.681976 CKSUM 203673858 STATS LOCAL MSV -7.8753 0.72043 STATS LOCAL VITERBI -8.4296 0.72043 STATS LOCAL FORWARD -4.0313 0.72043 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.95832 1.14990 1.12716 1.52197 1.38629 1.38629 1.38629 1.38629 0.00153 7.17931 7.17931 1.46634 0.26236 0.00000 * 1 1.25137 1.18895 1.35392 1.88968 1 c - - : 1.38629 1.38629 1.38629 1.38629 0.00153 7.17931 7.17931 1.46634 0.26236 1.09861 0.40547 2 1.31131 1.11473 1.83277 1.41651 2 c - - : 1.38629 1.38629 1.38629 1.38629 0.00153 7.17931 7.17931 1.46634 0.26236 1.09861 0.40547 3 1.71841 1.52752 1.19308 1.20301 3 g - - : 1.38629 1.38629 1.38629 1.38629 0.00153 7.17931 7.17931 1.46634 0.26236 1.09861 0.40547 4 2.20773 1.06997 1.42718 1.18076 4 c - - : 1.38629 1.38629 1.38629 1.38629 0.00153 7.17931 7.17931 1.46634 0.26236 1.09861 0.40547 5 2.20203 1.09918 0.91320 1.86408 5 g - - : 1.38629 1.38629 1.38629 1.38629 0.00153 7.17931 7.17931 1.46634 0.26236 1.09861 0.40547 6 1.44570 4.63308 0.36492 2.80611 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.00900 7.17931 4.80410 1.46634 0.26236 1.09861 0.40547 7 1.70835 1.99323 0.66201 1.79114 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.01212 4.48477 7.17185 0.13100 2.09733 2.54578 0.08166 8 1.56486 2.64491 0.97580 1.07009 9 g - - < 1.38629 1.38629 1.38629 1.38629 0.00154 7.17185 7.17185 1.46634 0.26236 0.17058 1.85264 9 3.57065 0.12662 2.94016 3.27179 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.00153 7.17931 7.17931 1.46634 0.26236 1.09861 0.40547 10 6.93507 0.00281 7.08056 6.91416 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.00153 7.17931 7.17931 1.46634 0.26236 1.09861 0.40547 11 5.78222 6.80835 0.00535 6.76911 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.00153 7.17931 7.17931 1.46634 0.26236 1.09861 0.40547 12 3.88764 6.84017 0.02344 6.43683 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.01653 7.17931 4.15849 1.46634 0.26236 1.09861 0.40547 13 3.90406 6.92230 0.05423 3.45326 14 G - - - 1.38629 1.38629 1.38629 1.38629 0.00155 7.16433 7.16433 1.46634 0.26236 0.09306 2.42072 14 7.36716 0.00242 7.73181 6.61003 15 C - - - 1.38629 1.38629 1.38629 1.38629 0.00153 7.17931 7.17931 1.46634 0.26236 1.09861 0.40547 15 6.78663 0.02720 7.04821 3.69547 16 C - - - 1.38629 1.38629 1.38629 1.38629 0.00807 7.17931 4.92374 1.46634 0.26236 1.09861 0.40547 16 7.35892 0.00244 7.72311 6.60271 17 C - - - 1.38629 1.38629 1.38629 1.38629 0.00154 7.17278 7.17278 1.46634 0.26236 0.19031 1.75273 17 6.78735 0.05905 7.07250 2.89379 18 C - - - 1.38629 1.38629 1.38629 1.38629 0.00153 7.17931 7.17931 1.46634 0.26236 1.09861 0.40547 18 8.07623 7.32175 8.93633 0.00110 19 U - - - 1.38629 1.38629 1.38629 1.38629 0.00153 7.17931 7.17931 1.46634 0.26236 1.09861 0.40547 19 7.36716 0.00242 7.73181 6.61003 20 C - - - 1.38629 1.38629 1.38629 1.38629 0.00153 7.17931 7.17931 1.46634 0.26236 1.09861 0.40547 20 8.07623 7.32175 8.93633 0.00110 21 U - - - 1.38629 1.38629 1.38629 1.38629 0.00795 4.93920 7.17931 0.20078 1.70423 1.09861 0.40547 21 6.55135 4.20779 0.01732 7.05300 23 G - - - 1.38629 1.38629 1.38629 1.38629 0.00153 7.17931 7.17931 1.46634 0.26236 1.09861 0.40547 22 1.28843 6.97437 0.32578 6.57498 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.00153 7.17931 7.17931 1.46634 0.26236 1.09861 0.40547 23 6.72756 0.09110 6.65717 2.46991 25 C - - < 1.38629 1.38629 1.38629 1.38629 0.00153 7.17931 7.17931 1.46634 0.26236 1.09861 0.40547 24 1.47367 3.51630 0.30532 5.44361 26 G - - < 1.38629 1.38629 1.38629 1.38629 0.01019 7.17931 4.66988 1.46634 0.26236 1.09861 0.40547 25 0.86164 2.60670 0.85883 2.52458 27 g - - < 1.38629 1.38629 1.38629 1.38629 0.02440 4.13027 4.82552 0.43521 1.04164 0.15068 1.96697 26 2.18313 1.85259 0.97054 1.04525 30 g - - < 1.38629 1.38629 1.38629 1.38629 0.17564 2.48656 2.55249 0.40195 1.10569 2.52049 0.08384 27 1.27429 1.20235 1.57194 1.55004 33 c - - < 1.38629 1.38629 1.38629 1.38629 0.13068 7.09183 2.10646 1.46634 0.26236 4.72640 0.00890 28 1.64640 1.73643 0.58880 2.57549 34 G - - < 1.38629 1.38629 1.38629 1.38629 0.16901 6.96305 1.86722 1.46634 0.26236 3.01378 0.05035 29 1.41883 1.25942 2.07983 1.05202 35 u - - < 1.38629 1.38629 1.38629 1.38629 0.27008 1.44572 6.80925 1.33841 0.30417 0.00490 5.32010 30 1.92147 2.07849 1.13603 0.89796 46 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00153 7.17931 7.17931 1.46634 0.26236 1.09861 0.40547 31 1.80008 1.47501 1.43320 1.00132 47 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00153 7.17931 7.17931 1.46634 0.26236 1.09861 0.40547 32 1.91404 0.78617 1.83439 1.43877 48 c - - _ 1.38629 1.38629 1.38629 1.38629 0.04411 7.17931 3.16092 1.46634 0.26236 1.09861 0.40547 33 1.74947 1.36257 1.17019 1.34776 49 g - - _ 1.38629 1.38629 1.38629 1.38629 0.43297 7.13679 1.04804 1.46634 0.26236 1.87799 0.16593 34 1.47173 1.14662 1.01059 2.42182 50 g - - _ 1.38629 1.38629 1.38629 1.38629 2.26709 0.26642 2.03814 1.28524 0.32377 0.66256 0.72470 35 1.52205 2.22812 0.82322 1.44821 79 g - - > 1.38629 1.38629 1.38629 1.38629 0.07194 6.87755 2.68263 1.46634 0.26236 0.79869 0.59769 36 2.77033 0.71483 1.60822 1.39498 80 c - - > 1.38629 1.38629 1.38629 1.38629 0.00189 6.96509 6.96509 1.46634 0.26236 0.57463 0.82763 37 1.94534 1.78195 1.02304 1.11093 81 g - - > 1.38629 1.38629 1.38629 1.38629 0.14659 2.14788 3.93129 0.01419 4.26215 0.10680 2.28975 38 1.46458 1.00812 1.28281 2.06622 83 c - - > 1.38629 1.38629 1.38629 1.38629 0.01044 7.15460 4.64517 1.46634 0.26236 0.05881 2.86272 39 2.77480 0.85721 2.76885 0.79727 84 u - - > 1.38629 1.38629 1.38629 1.38629 0.00154 7.17066 7.17066 1.46634 0.26236 0.15068 1.96697 40 5.69076 0.41285 3.49104 1.18944 85 C - - > 1.38629 1.38629 1.38629 1.38629 0.00153 7.17931 7.17931 1.46634 0.26236 1.09861 0.40547 41 3.18648 6.79710 0.06997 3.68326 86 G - - > 1.38629 1.38629 1.38629 1.38629 0.00153 7.17931 7.17931 1.46634 0.26236 1.09861 0.40547 42 6.76486 0.69464 6.74229 0.69633 87 c - - > 1.38629 1.38629 1.38629 1.38629 0.00153 7.17931 7.17931 1.46634 0.26236 1.09861 0.40547 43 6.49037 2.24388 0.11492 6.91174 88 G - - - 1.38629 1.38629 1.38629 1.38629 0.00153 7.17931 7.17931 1.46634 0.26236 1.09861 0.40547 44 0.00211 7.60751 7.08212 7.16375 89 A - - - 1.38629 1.38629 1.38629 1.38629 0.00153 7.17931 7.17931 1.46634 0.26236 1.09861 0.40547 45 8.07623 7.32175 8.93633 0.00110 90 U - - - 1.38629 1.38629 1.38629 1.38629 0.00153 7.17931 7.17931 1.46634 0.26236 1.09861 0.40547 46 6.57010 7.79937 0.00264 7.09805 91 G - - - 1.38629 1.38629 1.38629 1.38629 0.00153 7.17931 7.17931 1.46634 0.26236 1.09861 0.40547 47 6.50688 3.91756 6.58703 0.02302 92 U - - > 1.38629 1.38629 1.38629 1.38629 0.00715 5.05786 7.17931 0.22457 1.60374 1.09861 0.40547 48 6.79850 0.00640 6.76085 5.49615 94 C - - > 1.38629 1.38629 1.38629 1.38629 0.00153 7.17931 7.17931 1.46634 0.26236 1.09861 0.40547 49 6.52711 7.29595 0.00269 7.51613 95 G - - > 1.38629 1.38629 1.38629 1.38629 0.00153 7.17931 7.17931 1.46634 0.26236 1.09861 0.40547 50 3.31668 6.56388 0.04040 6.26183 96 G - - > 1.38629 1.38629 1.38629 1.38629 0.10282 7.17931 2.33357 1.46634 0.26236 1.09861 0.40547 51 0.39709 3.68187 2.21223 1.64457 97 A - - > 1.38629 1.38629 1.38629 1.38629 0.00996 7.07818 4.70297 1.46634 0.26236 0.01560 4.16819 52 1.77104 0.69544 1.97758 1.64720 98 c - - > 1.38629 1.38629 1.38629 1.38629 0.00154 7.17185 7.17185 1.46634 0.26236 0.17058 1.85264 53 2.97325 0.51442 2.67425 1.26565 99 C - - > 1.38629 1.38629 1.38629 1.38629 0.00153 7.17931 7.17931 1.46634 0.26236 1.09861 0.40547 54 2.47431 1.00123 0.94806 1.82721 100 g - - : 1.38629 1.38629 1.38629 1.38629 0.00153 7.17931 7.17931 1.46634 0.26236 1.09861 0.40547 55 1.86356 0.80849 1.32063 2.02207 101 c - - : 1.38629 1.38629 1.38629 1.38629 0.00153 7.17931 7.17931 1.46634 0.26236 1.09861 0.40547 56 0.97557 1.20302 2.63237 1.38297 102 a - - : 1.38629 1.38629 1.38629 1.38629 0.00153 7.17931 7.17931 1.46634 0.26236 1.09861 0.40547 57 1.35309 1.41260 3.64306 0.75103 103 u - - : 1.38629 1.38629 1.38629 1.38629 0.00153 7.17931 7.17931 1.46634 0.26236 1.09861 0.40547 58 2.17223 0.97783 1.47033 1.27260 104 c - - : 1.38629 1.38629 1.38629 1.38629 0.00153 7.17931 7.17931 1.46634 0.26236 1.09861 0.40547 59 1.62463 1.58734 0.91707 1.61515 105 g - - : 1.38629 1.38629 1.38629 1.38629 0.00076 7.17855 * 1.46634 0.26236 0.00000 * //