INFERNAL1/a [1.1.4 | Dec 2020] NAME raiA-hairpin ACC RF03059 DESC raiA-hairpin RNA STATES 148 NODES 42 CLEN 48 W 62 ALPH RNA RF no CONS yes MAP yes DATE Mon Oct 1 22:22:42 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmcalibrate --cpu 8 CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 80 EFFN 6.811523 CKSUM 634871346 NULL 0.000 0.000 0.000 0.000 GA 43.70 TC 43.70 NC 36.40 EFP7GF -14.1747 0.71937 ECMLC 0.54855 -10.68163 1.07503 1600000 758528 0.001582 ECMGC 0.35529 -22.46708 -5.05802 1600000 194216 0.002060 ECMLI 0.52168 -9.85954 2.20494 1600000 649435 0.001848 ECMGI 0.37279 -18.12941 -2.36817 1600000 142499 0.002807 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 62 81 -8.203 -8.410 -0.022 -6.824 IL 1 1 2 1 4 1 12 67 86 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 11 66 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - C - - - ML 3 2 3 5 3 1 11 62 81 -9.158 -0.009 -7.812 -4.252 1.931 -4.897 -3.324 D 4 2 3 5 3 0 6 62 80 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 10 65 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 1 10 61 80 -9.158 -0.009 -7.812 1.273 -2.886 0.338 -2.451 D 7 5 3 8 3 0 5 60 79 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 10 64 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - C - - - ML 9 8 3 11 3 1 9 60 79 -9.158 -0.009 -7.812 -4.252 1.931 -4.897 -3.324 D 10 8 3 11 3 0 5 59 78 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 9 63 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - C - - - ML 12 11 3 14 3 1 8 59 78 -9.158 -0.044 -5.146 -3.446 1.873 -3.364 -2.755 D 13 11 3 14 3 0 5 58 77 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 8 62 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - G - - - ML 15 14 3 17 3 1 7 58 77 -9.123 -0.009 -7.777 0.013 -2.341 1.278 -1.440 D 16 14 3 17 3 0 4 57 76 -6.762 -0.885 -1.154 IL 17 17 3 17 3 1 7 61 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 7 57 76 -9.158 -0.009 -7.812 1.718 -2.681 -2.746 -1.304 D 19 17 3 20 3 0 3 56 75 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 6 60 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 21 20 3 23 3 1 6 56 75 -9.158 -0.074 -4.364 -2.896 -4.743 1.915 -4.104 D 22 20 3 23 3 0 2 55 74 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 6 59 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - U - - - ML 24 23 3 26 3 1 5 55 73 -9.093 -0.009 -7.747 -3.536 -3.224 -4.325 1.910 D 25 23 3 26 3 0 2 54 73 -7.125 -0.636 -1.517 IL 26 26 3 26 3 1 5 58 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - C - - - ML 27 26 3 29 3 1 4 54 72 -9.158 -0.009 -7.812 -2.835 1.869 -4.144 -2.731 D 28 26 3 29 3 0 0 53 72 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 4 57 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - C - - - ML 30 29 3 32 3 1 3 53 71 -9.158 -0.009 -7.812 -3.198 1.830 -2.636 -2.512 D 31 29 3 32 3 0 0 52 71 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 3 56 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - G - - - ML 33 32 3 35 3 1 2 52 70 -9.158 -0.276 -2.535 -3.700 -5.160 1.944 -4.438 D 34 32 3 35 3 0 0 51 70 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 3 55 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - A - - - ML 36 35 3 38 3 1 2 51 69 -2.958 -0.224 -6.056 1.806 -3.211 -1.920 -2.929 D 37 35 3 38 3 0 0 50 68 -0.535 -2.395 -3.064 IL 38 38 3 38 3 1 2 50 69 -3.480 -0.166 -5.719 0.000 0.000 0.000 0.000 [ MATR 13 ] - 52 - A - - MR 39 38 3 41 3 1 3 49 68 -9.483 -0.009 -7.800 1.944 -4.585 -4.049 -4.304 D 40 38 3 41 3 0 0 48 66 -6.591 -1.240 -0.820 IR 41 41 3 41 3 1 1 50 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 51 - G - - MR 42 41 3 44 3 1 2 48 66 -9.494 -0.008 -7.812 -2.176 -4.286 1.868 -3.712 D 43 41 3 44 3 0 0 47 65 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 1 49 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 50 - G - - MR 45 44 3 47 3 1 2 47 65 -9.494 -0.008 -7.812 -3.700 -5.160 1.944 -4.438 D 46 44 3 47 3 0 0 46 64 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 1 48 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 49 - G - - MR 48 47 3 50 3 1 2 46 64 -9.494 -0.008 -7.812 -1.805 -4.039 1.834 -3.493 D 49 47 3 50 3 0 0 45 63 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 1 47 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 48 - A - - MR 51 50 3 53 3 1 1 45 63 -9.494 -0.040 -5.284 1.774 -2.904 -2.929 -1.670 D 52 50 3 53 3 0 0 44 62 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 1 46 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 47 - A - - MR 54 53 3 56 3 1 1 44 62 -9.463 -0.009 -7.781 1.410 -2.872 0.037 -2.466 D 55 53 3 56 3 0 0 43 61 -6.864 -0.935 -1.094 IR 56 56 3 56 3 1 1 45 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 46 - A - - MR 57 56 3 59 3 1 1 43 61 -5.041 -0.051 -7.812 1.750 -1.667 -2.792 -2.504 D 58 56 3 59 3 0 0 42 60 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 1 44 62 -2.199 -0.442 -4.437 0.000 0.000 0.000 0.000 [ MATR 20 ] - 44 - A - - MR 60 59 3 62 3 1 1 42 60 -9.494 -0.008 -7.812 1.609 -3.031 -0.568 -2.703 D 61 59 3 62 3 0 0 41 59 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 1 43 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 43 - C - - MR 63 62 3 65 3 1 1 41 59 -9.494 -0.008 -7.812 -4.252 1.931 -4.897 -3.324 D 64 62 3 65 3 0 0 40 58 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 1 42 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 42 - G - - MR 66 65 3 68 3 1 1 40 58 -9.494 -0.008 -7.812 -3.700 -5.160 1.944 -4.438 D 67 65 3 68 3 0 0 39 57 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 1 41 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 41 - U - - MR 69 68 3 71 3 1 1 39 57 -9.494 -0.008 -7.812 -2.316 -2.566 -3.438 1.823 D 70 68 3 71 3 0 0 38 56 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 1 40 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 40 - G - - MR 72 71 3 74 3 1 1 38 56 -9.494 -0.008 -7.812 -2.623 -4.576 1.900 -3.963 D 73 71 3 74 3 0 0 37 55 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 1 39 57 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 39 - G - - MR 75 74 3 77 3 1 1 37 55 -9.494 -0.047 -5.018 -1.963 -4.144 1.850 -3.587 D 76 74 3 77 3 0 0 36 54 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 1 38 56 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 38 - U - - MR 78 77 3 80 5 1 1 36 54 -8.142 -0.019 -7.958 -8.170 -9.062 -1.324 -1.956 -1.754 1.607 D 79 77 3 80 5 0 0 35 53 -5.699 -0.524 -3.325 -4.756 -2.751 IR 80 80 3 80 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 14 37 G C - - MP 81 80 3 85 6 2 2 35 53 -9.720 -9.659 -0.027 -8.436 -6.464 -9.111 -6.538 -4.072 -7.024 -1.133 -7.916 -5.487 -2.747 -7.302 -5.442 3.859 -5.699 -0.888 -3.039 -5.664 -4.928 -5.880 ML 82 80 3 85 6 1 1 34 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 3 85 6 1 1 34 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 3 85 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 35 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 15 36 G C - - MP 87 86 6 91 6 2 2 33 51 -9.707 -9.646 -0.014 -8.423 -8.703 -9.098 -4.352 -2.962 -4.224 0.973 -5.271 -4.760 0.137 -4.831 -4.482 3.289 -4.770 0.818 -0.665 -4.083 -2.406 -3.166 ML 88 86 6 91 6 1 1 32 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 32 50 -7.199 -5.928 -1.264 -5.906 -1.040 -4.120 0.089 -0.381 -0.502 0.548 D 90 86 6 91 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 33 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 16 35 C G - - MP 93 92 6 97 6 2 2 31 49 -9.720 -9.659 -0.025 -8.436 -8.716 -6.720 -4.331 -4.251 -4.279 -0.376 -3.242 -4.953 3.066 -3.925 -4.241 -0.204 -2.570 -2.124 1.926 -4.511 0.285 -3.087 ML 94 92 6 97 6 1 1 30 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 30 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 17 34 u a - - MP 99 98 6 103 6 2 2 29 47 -9.709 -9.648 -0.014 -8.425 -8.705 -9.100 -4.597 -4.572 -4.470 -0.745 -2.269 -5.047 1.994 -4.070 -4.460 -0.596 -4.856 -2.521 2.653 -4.741 1.867 -3.314 ML 100 98 6 103 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 26 44 -9.310 -8.009 -2.075 -4.488 -4.505 -0.581 IL 103 103 5 103 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 18 33 C G - - MP 105 104 6 109 6 2 2 27 45 -9.720 -9.659 -0.014 -8.436 -8.716 -9.111 -5.611 -5.689 -5.143 -1.791 -3.630 -5.433 3.530 -4.490 -5.190 -1.665 -5.411 -3.723 0.347 -5.567 1.099 -3.985 ML 106 104 6 109 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 19 32 C G - - MP 111 110 6 115 6 2 2 25 43 -9.720 -9.659 -0.014 -8.436 -8.716 -9.111 -5.733 -5.844 -5.216 -1.961 -3.668 -5.471 3.652 -4.544 -5.276 -1.848 -5.471 -3.926 0.096 -5.663 0.509 -4.070 ML 112 110 6 115 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 20 31 G C - - MP 117 116 6 121 6 2 2 23 41 -9.720 -9.659 -0.014 -8.436 -8.716 -9.111 -5.650 -3.791 -5.677 -0.545 -6.091 -5.260 0.063 -6.019 -5.159 3.727 -5.413 -1.530 -1.763 -5.100 -3.379 -4.595 ML 118 116 6 121 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 21 30 G C - - MP 123 122 6 127 4 2 2 21 39 -3.297 -8.410 -0.257 -4.090 -4.375 -3.015 -4.271 0.816 -5.420 -5.006 -0.552 -4.818 -4.490 3.483 -4.832 -0.381 -0.806 -4.252 -2.553 -1.262 ML 124 122 6 127 4 1 1 20 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 4 1 1 19 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 126 122 6 127 4 0 0 18 37 -4.568 -4.250 -2.265 -0.520 IL 127 127 5 127 4 1 1 21 39 -2.705 -0.732 -2.137 -5.874 0.000 0.000 0.000 0.000 IR 128 128 6 128 3 1 1 20 38 -2.033 -0.478 -4.733 0.000 0.000 0.000 0.000 [ MATL 35 ] 23 - g - - - ML 129 128 6 131 3 1 1 18 36 -9.086 -0.009 -7.741 0.009 -0.775 0.315 0.220 D 130 128 6 131 3 0 0 17 36 -7.190 -0.601 -1.582 IL 131 131 3 131 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 24 - g - - - ML 132 131 3 134 3 1 1 17 35 -9.158 -0.009 -7.812 0.433 -0.886 0.754 -1.243 D 133 131 3 134 3 0 0 17 35 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 25 - a - - - ML 135 134 3 137 3 1 1 15 34 -9.158 -0.009 -7.812 0.483 0.034 -0.617 -0.110 D 136 134 3 137 3 0 0 16 34 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 26 - u - - - ML 138 137 3 140 3 1 1 14 32 -9.158 -0.009 -7.812 -0.342 -0.318 -0.839 0.888 D 139 137 3 140 3 0 0 15 33 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 27 - C - - - ML 141 140 3 143 3 1 1 12 31 -9.158 -0.192 -3.023 -0.920 1.191 -1.268 -0.371 D 142 140 3 143 3 0 0 13 32 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 28 - A - - - ML 144 143 3 146 2 1 1 1 1 * 0.000 1.071 -1.365 -0.508 -0.309 D 145 143 3 146 2 0 0 0 0 * 0.000 IL 146 146 3 146 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 41 ] - - - - - - E 147 146 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME raiA-hairpin ACC RF03059 DESC raiA-hairpin RNA LENG 48 MAXL 114 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Oct 1 22:22:42 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED NSEQ 80 EFFN 9.331055 CKSUM 634871346 STATS LOCAL MSV -7.3342 0.71937 STATS LOCAL VITERBI -7.9768 0.71937 STATS LOCAL FORWARD -3.7550 0.71937 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.52158 1.27490 1.03207 1.92479 1.38629 1.38629 1.38629 1.38629 0.01513 4.89171 4.89171 1.46634 0.26236 0.00000 * 1 4.68235 0.03361 5.07179 4.04441 1 C - - : 1.38629 1.38629 1.38629 1.38629 0.01513 4.89171 4.89171 1.46634 0.26236 1.09861 0.40547 2 0.47260 3.80129 1.12176 3.55534 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.01513 4.89171 4.89171 1.46634 0.26236 1.09861 0.40547 3 4.68235 0.03361 5.07179 4.04441 3 C - - : 1.38629 1.38629 1.38629 1.38629 0.01513 4.89171 4.89171 1.46634 0.26236 1.09861 0.40547 4 4.10917 0.06662 3.80963 3.65478 4 C - - : 1.38629 1.38629 1.38629 1.38629 0.04114 4.89171 3.41732 1.46634 0.26236 1.09861 0.40547 5 1.39030 3.24685 0.45748 2.53541 5 G - - : 1.38629 1.38629 1.38629 1.38629 0.01553 4.86610 4.86610 1.46634 0.26236 0.37695 1.15820 6 0.16636 3.51424 3.59200 2.34398 6 A - - : 1.38629 1.38629 1.38629 1.38629 0.01513 4.89171 4.89171 1.46634 0.26236 1.09861 0.40547 7 3.57952 5.02676 0.04604 4.55185 7 G - - : 1.38629 1.38629 1.38629 1.38629 0.06392 4.89171 2.91125 1.46634 0.26236 1.09861 0.40547 8 4.22750 3.97402 4.78123 0.04267 8 U - - : 1.38629 1.38629 1.38629 1.38629 0.01588 4.84368 4.84368 1.46634 0.26236 0.24374 1.53106 9 3.50483 0.06973 4.52677 3.63107 9 C - - : 1.38629 1.38629 1.38629 1.38629 0.01513 4.89171 4.89171 1.46634 0.26236 1.09861 0.40547 10 3.97903 0.09174 3.24143 3.51161 10 C - - : 1.38629 1.38629 1.38629 1.38629 0.01513 4.89171 4.89171 1.46634 0.26236 1.09861 0.40547 11 4.28083 5.33628 0.02734 4.78897 11 G - - : 1.38629 1.38629 1.38629 1.38629 0.01513 4.89171 4.89171 1.46634 0.26236 1.09861 0.40547 12 0.10840 3.91987 2.81742 3.76667 12 A - - : 1.38629 1.38629 1.38629 1.38629 0.14100 2.08743 4.89171 0.11699 2.20361 1.09861 0.40547 13 3.62620 4.69775 0.04656 4.62982 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.03097 4.89171 3.77302 1.46634 0.26236 1.09861 0.40547 14 2.05195 2.64439 0.29225 2.92096 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.01537 4.87612 4.87612 1.46634 0.26236 0.50284 0.92839 15 3.13687 0.56482 2.73876 1.12866 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.02870 4.89171 3.87369 1.46634 0.26236 1.09861 0.40547 16 3.44510 1.37512 3.23629 0.39159 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.01534 4.87835 4.87835 1.46634 0.26236 0.54384 0.86872 17 4.09100 0.27913 3.95576 1.57171 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.01513 4.89171 4.89171 1.46634 0.26236 1.09861 0.40547 18 4.16320 0.19902 4.04419 1.91471 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.01513 4.89171 4.89171 1.46634 0.26236 1.09861 0.40547 19 3.30668 2.70442 0.13248 3.88568 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.01513 4.89171 4.89171 1.46634 0.26236 1.09861 0.40547 20 2.23442 3.27900 0.23864 2.69439 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.18356 2.21822 2.83202 0.13273 2.08508 1.09861 0.40547 21 1.40468 1.96695 1.12844 1.23397 23 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01596 4.83896 4.83896 1.46634 0.26236 0.22712 1.59367 22 1.07715 2.02839 0.80751 2.50198 24 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01513 4.89171 4.89171 1.46634 0.26236 1.09861 0.40547 23 1.03635 1.33225 1.83106 1.50902 25 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01513 4.89171 4.89171 1.46634 0.26236 1.09861 0.40547 24 1.67341 1.61377 1.98854 0.74158 26 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01513 4.89171 4.89171 1.46634 0.26236 1.09861 0.40547 25 2.14165 0.50333 2.30878 1.72237 27 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04061 4.89171 3.43314 1.46634 0.26236 1.09861 0.40547 26 0.60000 2.46258 1.75435 1.64532 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01552 4.86662 4.86662 1.46634 0.26236 0.38195 1.14737 27 3.35279 0.28450 3.08248 1.79108 30 C - - > 1.38629 1.38629 1.38629 1.38629 0.01513 4.89171 4.89171 1.46634 0.26236 1.09861 0.40547 28 4.07782 0.14712 2.65328 3.00682 31 C - - > 1.38629 1.38629 1.38629 1.38629 0.01513 4.89171 4.89171 1.46634 0.26236 1.09861 0.40547 29 2.78806 4.17919 0.10168 3.92074 32 G - - > 1.38629 1.38629 1.38629 1.38629 0.01513 4.89171 4.89171 1.46634 0.26236 1.09861 0.40547 30 2.60771 4.09060 0.11864 3.84255 33 G - - > 1.38629 1.38629 1.38629 1.38629 0.02870 4.89171 3.87369 1.46634 0.26236 1.09861 0.40547 31 0.83036 3.39526 0.71380 3.19913 34 g - - > 1.38629 1.38629 1.38629 1.38629 0.01534 4.87835 4.87835 1.46634 0.26236 0.54384 0.86872 32 1.38400 3.06219 0.43562 2.88642 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.01513 4.89171 4.89171 1.46634 0.26236 1.09861 0.40547 33 3.14657 0.45578 2.51073 1.41949 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.01513 4.89171 4.89171 1.46634 0.26236 1.09861 0.40547 34 4.80059 0.07598 4.62755 2.89752 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.04496 4.89171 3.31177 1.46634 0.26236 1.09861 0.40547 35 2.44752 2.99485 2.68774 0.22889 38 U - - : 1.38629 1.38629 1.38629 1.38629 0.01559 4.86234 4.86234 1.46634 0.26236 0.34499 1.23179 36 2.84396 4.57868 0.08748 4.18006 39 G - - : 1.38629 1.38629 1.38629 1.38629 0.01513 4.89171 4.89171 1.46634 0.26236 1.09861 0.40547 37 3.35824 4.90113 0.05541 4.45052 40 G - - : 1.38629 1.38629 1.38629 1.38629 0.01513 4.89171 4.89171 1.46634 0.26236 1.09861 0.40547 38 3.15296 3.40772 4.02714 0.09835 41 U - - : 1.38629 1.38629 1.38629 1.38629 0.01513 4.89171 4.89171 1.46634 0.26236 1.09861 0.40547 39 4.28083 5.33628 0.02734 4.78897 42 G - - : 1.38629 1.38629 1.38629 1.38629 0.01513 4.89171 4.89171 1.46634 0.26236 1.09861 0.40547 40 4.68235 0.03361 5.07179 4.04441 43 C - - : 1.38629 1.38629 1.38629 1.38629 0.01513 4.89171 4.89171 1.46634 0.26236 1.09861 0.40547 41 0.24563 3.83888 1.76784 3.66620 44 A - - : 1.38629 1.38629 1.38629 1.38629 0.04791 3.23719 4.89171 0.34644 1.22826 1.09861 0.40547 42 0.14653 2.57160 3.60984 3.41650 46 A - - : 1.38629 1.38629 1.38629 1.38629 0.03900 4.89171 3.48204 1.46634 0.26236 1.09861 0.40547 43 0.37845 3.77363 1.33421 3.54922 47 A - - : 1.38629 1.38629 1.38629 1.38629 0.01549 4.86820 4.86820 1.46634 0.26236 0.39773 1.11426 44 0.13101 3.67010 3.72147 2.61563 48 A - - : 1.38629 1.38629 1.38629 1.38629 0.01513 4.89171 4.89171 1.46634 0.26236 1.09861 0.40547 45 2.72414 4.49990 0.09771 4.11199 49 G - - : 1.38629 1.38629 1.38629 1.38629 0.01513 4.89171 4.89171 1.46634 0.26236 1.09861 0.40547 46 4.28083 5.33628 0.02734 4.78897 50 G - - : 1.38629 1.38629 1.38629 1.38629 0.01513 4.89171 4.89171 1.46634 0.26236 1.09861 0.40547 47 3.00691 4.68430 0.07544 4.27018 51 G - - : 1.38629 1.38629 1.38629 1.38629 0.02421 4.89171 4.10967 1.46634 0.26236 1.09861 0.40547 48 0.02631 4.95902 4.57283 4.75399 52 A - - : 1.38629 1.38629 1.38629 1.38629 0.00766 4.87516 * 1.46634 0.26236 0.00000 * //