INFERNAL1/a [1.1.4 | Dec 2020] NAME nhaA-I ACC RF03057 DESC nhaA-I RNA STATES 177 NODES 46 CLEN 56 W 126 ALPH RNA RF no CONS yes MAP yes DATE Fri Dec 21 11:32:17 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmcalibrate --cpu 8 CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 281 EFFN 25.696304 CKSUM 1922787463 NULL 0.000 0.000 0.000 0.000 GA 38.70 TC 38.80 NC 38.50 EFP7GF -19.5695 0.72303 ECMLC 0.54135 -11.96617 0.24300 1600000 890518 0.001348 ECMGC 0.37484 -19.95175 -5.07409 1600000 105687 0.003785 ECMLI 0.59251 -9.15327 1.66119 1600000 727800 0.001649 ECMGI 0.39359 -15.65387 -2.03073 1600000 85255 0.004692 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 126 197 -9.902 -10.109 -0.007 -8.523 IL 1 1 2 1 4 1 19 128 199 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 18 128 199 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 3 17 126 197 -10.826 -0.003 -9.480 -4.080 -4.633 1.946 -4.371 D 4 2 3 5 3 0 15 124 195 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 17 127 198 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 2 16 125 196 -10.826 -0.003 -9.480 -5.403 -7.009 1.974 -4.657 D 7 5 3 8 3 0 14 123 194 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 17 126 197 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 2 15 124 195 -10.826 -0.003 -9.480 -5.533 -7.246 1.985 -6.283 D 10 8 3 11 3 0 14 122 193 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 16 125 196 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 12 11 3 14 2 1 14 123 194 -11.448 -0.001 -6.260 -5.691 -7.145 1.986 D 13 11 3 14 2 0 13 122 193 -8.445 -0.004 IL 14 14 3 14 2 1 15 123 194 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 5 ] - - - - - - B 15 14 3 16 87 0 13 122 193 [ BEGL 6 ] - - - - - - S 16 15 1 17 4 0 0 91 162 -0.010 -8.974 -8.381 -9.021 [ MATP 7 ] 5 58 G C - - MP 17 16 1 21 6 2 2 91 162 -10.946 -10.885 -0.027 -6.511 -7.440 -10.336 -5.305 -4.001 -5.130 -0.239 -5.803 -5.705 1.036 -5.657 -5.493 3.456 -5.758 -1.337 -0.612 -5.009 -0.368 -4.067 ML 18 16 1 21 6 1 1 89 160 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 19 16 1 21 6 1 1 89 160 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 20 16 1 21 6 0 0 85 155 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 21 21 5 21 6 1 1 90 161 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 22 22 6 22 5 1 1 90 161 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 57 C G - - MP 23 22 6 27 6 2 2 89 160 -10.925 -10.864 -0.049 -5.534 -6.602 -10.315 -5.668 -5.409 -5.615 -1.263 -4.431 -6.370 3.182 -5.115 -5.499 -0.798 -5.974 -2.132 1.616 -5.828 1.192 -2.791 ML 24 22 6 27 6 1 1 88 158 -6.798 -7.144 -0.757 -1.553 -6.994 -4.524 -0.102 0.382 -0.808 0.256 MR 25 22 6 27 6 1 1 87 158 -7.246 -5.975 -1.202 -5.953 -1.087 -4.166 0.592 -0.661 -0.068 -0.143 D 26 22 6 27 6 0 0 83 154 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 27 27 5 27 6 1 1 88 159 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 28 28 6 28 5 1 1 88 159 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 56 c g - - MP 29 28 6 33 6 2 2 87 158 -10.903 -10.842 -0.398 -6.785 -2.118 -10.294 -3.797 -2.929 -3.566 1.229 -3.244 -4.760 2.518 -4.080 -3.974 2.078 -3.466 -1.226 0.693 -4.057 -0.297 -2.754 ML 30 28 6 33 6 1 1 86 157 -7.215 -7.562 -0.526 -1.970 -7.411 -4.941 0.539 -0.806 0.095 -0.140 MR 31 28 6 33 6 1 1 86 156 -7.449 -6.178 -1.123 -6.156 -1.123 -4.370 0.049 -0.167 -0.432 0.415 D 32 28 6 33 6 0 0 81 152 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 33 33 5 33 6 1 1 87 157 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 34 34 6 34 5 1 1 86 157 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 55 g c - - MP 35 34 6 39 6 2 2 85 156 -10.565 -10.504 -0.103 -5.498 -4.499 -9.956 -2.908 -3.131 -2.997 0.972 -2.326 -4.188 1.676 -3.670 -3.152 2.632 -3.996 -0.692 0.978 -3.084 -0.177 -2.527 ML 36 34 6 39 6 1 1 84 155 -6.693 -7.039 -1.048 -1.171 -6.889 -4.419 0.205 -0.041 -0.616 0.290 MR 37 34 6 39 6 1 1 84 155 -10.347 -9.076 -1.515 -9.054 -0.646 -7.268 0.110 -1.134 -0.319 0.734 D 38 34 6 39 6 0 0 79 149 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 39 39 5 39 6 1 1 85 156 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 40 40 6 40 5 1 1 85 155 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 54 c g - - MP 41 40 6 45 6 2 2 83 154 -10.631 -10.570 -0.038 -6.550 -9.626 -6.261 -1.967 -2.357 -0.550 1.505 -2.509 -2.654 1.631 -2.481 -2.086 1.537 -1.118 -0.167 1.278 -2.473 0.020 -1.692 ML 42 40 6 45 6 1 1 82 153 -7.141 -7.487 -0.560 -1.896 -7.337 -4.867 0.326 -0.581 -0.287 0.331 MR 43 40 6 45 6 1 1 82 153 -10.051 -8.780 -0.134 -8.758 -3.728 -6.972 1.598 -2.067 -1.204 -1.740 D 44 40 6 45 6 0 0 76 147 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 45 45 5 45 6 1 1 83 154 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 46 46 6 46 5 1 1 83 153 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 10 53 c g - - MP 47 46 6 51 6 2 2 82 152 -10.918 -10.858 -0.174 -4.917 -8.548 -3.703 -1.883 -1.477 -1.844 1.570 -2.312 -3.604 1.865 -2.884 -2.636 1.754 -2.685 0.663 0.824 -2.893 -0.655 -2.023 ML 48 46 6 51 6 1 1 80 151 -6.682 -7.028 -0.843 -1.437 -6.878 -4.408 0.104 0.079 -0.341 0.110 MR 49 46 6 51 6 1 1 79 150 -7.082 -5.811 -1.446 -5.789 -0.923 -4.003 0.607 -0.548 -0.250 -0.070 D 50 46 6 51 6 0 0 72 143 -9.716 -8.414 -4.211 -4.893 -4.911 -0.193 IL 51 51 5 51 6 1 1 81 152 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 52 52 6 52 5 1 1 81 152 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 11 52 c g - - MP 53 52 6 57 6 2 2 80 151 -10.766 -10.705 -0.231 -5.769 -9.761 -2.974 -2.588 -2.450 -2.781 1.207 -2.496 -3.219 1.880 -2.866 -2.107 1.783 -3.104 -0.878 1.854 -2.922 -0.529 -1.642 ML 54 52 6 57 6 1 1 79 150 -7.563 -7.909 -0.562 -1.822 -7.759 -5.289 0.320 0.135 -0.864 0.143 MR 55 52 6 57 6 1 1 77 148 -7.080 -5.809 -1.450 -5.787 -0.921 -4.001 0.331 -0.560 0.171 -0.093 D 56 52 6 57 6 0 0 66 136 -11.659 -10.357 -6.154 -6.836 -6.854 -0.048 IL 57 57 5 57 6 1 1 80 150 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 58 58 6 58 5 1 1 79 150 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 12 51 c g - - MP 59 58 6 63 6 2 2 78 149 -10.596 -10.535 -0.243 -7.322 -9.592 -2.774 -3.993 -3.981 -4.109 0.531 -3.127 -4.958 2.404 -4.044 -3.527 0.795 -3.749 -0.798 2.394 -4.268 -0.099 -2.664 ML 60 58 6 63 6 1 1 77 147 -7.188 -7.534 -0.954 -1.209 -7.384 -4.913 0.295 -0.563 -0.758 0.590 MR 61 58 6 63 6 1 1 74 145 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 62 58 6 63 6 0 0 62 132 -12.734 -11.432 -7.229 -7.911 -7.928 -0.022 IL 63 63 5 63 6 1 1 78 149 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 64 64 6 64 5 1 1 78 149 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 13 50 c g - - MP 65 64 6 69 4 2 2 77 148 -0.480 -3.688 -2.314 -7.816 -4.258 -3.913 -4.302 0.805 -3.691 -5.107 2.566 -4.203 -4.307 2.134 -4.805 -0.879 1.003 -4.416 -0.532 -2.057 ML 66 64 6 69 4 1 1 73 144 -1.613 -4.401 -0.967 -3.130 0.629 -0.598 -0.594 0.177 MR 67 64 6 69 4 1 1 65 136 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 68 64 6 69 4 0 0 61 130 -8.780 -1.828 -0.560 -4.732 IL 69 69 5 69 4 1 1 76 147 -0.391 -2.121 -7.191 -10.929 0.000 0.000 0.000 0.000 IR 70 70 6 70 3 1 1 65 134 -0.388 -2.093 -9.658 0.000 0.000 0.000 0.000 [ MATL 16 ] 26 - a - - - ML 71 70 6 73 3 1 1 15 34 -10.826 -0.003 -9.480 0.694 -0.325 -0.210 -0.475 D 72 70 6 73 3 0 0 16 35 -6.174 -1.687 -0.566 IL 73 73 3 73 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 27 - u - - - ML 74 73 3 76 3 1 1 14 33 -10.826 -0.003 -9.480 -0.271 0.201 -1.011 0.609 D 75 73 3 76 3 0 0 15 34 -6.174 -1.687 -0.566 IL 76 76 3 76 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 28 - a - - - ML 77 76 3 79 3 1 1 13 31 -10.826 -0.271 -2.551 0.214 0.014 -0.080 -0.177 D 78 76 3 79 3 0 0 14 33 -6.174 -1.687 -0.566 IL 79 79 3 79 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 29 - u - - - ML 80 79 3 82 3 1 1 11 30 -10.558 -0.338 -2.263 0.139 -0.504 0.094 0.172 D 81 79 3 82 3 0 0 11 29 -9.803 -5.316 -0.038 IL 82 82 3 82 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 30 - u - - - ML 83 82 3 85 2 1 1 1 1 * 0.000 -0.106 -0.589 0.059 0.448 D 84 82 3 85 2 0 0 0 0 * 0.000 IL 85 85 3 85 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 21 ] - - - - - - E 86 85 3 -1 0 0 0 0 0 [ BEGR 22 ] - - - - - - S 87 15 1 88 3 0 1 72 125 -10.826 -0.003 -9.480 IL 88 88 2 88 3 1 1 74 127 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 59 - A - - - ML 89 88 2 91 3 1 2 72 125 -10.826 -0.003 -9.480 1.988 -6.898 -6.242 -6.420 D 90 88 2 91 3 0 0 70 123 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 73 126 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 60 - G - - - ML 92 91 3 94 3 1 2 71 124 -10.826 -0.003 -9.480 -5.533 -7.246 1.985 -6.283 D 93 91 3 94 3 0 0 69 122 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 72 125 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 61 - G - - - ML 95 94 3 97 3 1 1 70 123 -10.826 -0.003 -9.480 -5.533 -7.246 1.985 -6.283 D 96 94 3 97 3 0 0 68 121 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 71 124 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 62 - U - - - ML 98 97 3 100 3 1 1 69 122 -10.826 -0.003 -9.480 -0.542 -1.410 -1.644 1.388 D 99 97 3 100 3 0 0 67 120 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 70 123 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 63 - u - - - ML 101 100 3 103 3 1 1 68 121 -10.826 -0.003 -9.480 -0.125 -0.178 -0.974 0.757 D 102 100 3 103 3 0 0 65 119 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 69 122 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 64 - a - - - ML 104 103 3 106 3 1 1 67 120 -10.826 -0.009 -7.525 0.362 -0.635 -0.341 0.357 D 105 103 3 106 3 0 0 64 117 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 68 121 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 65 - u - - - ML 107 106 3 109 3 1 1 66 119 -10.820 -0.066 -4.507 0.386 -0.838 -1.122 0.744 D 108 106 3 109 3 0 0 62 115 -6.520 -2.033 -0.425 IL 109 109 3 109 3 1 1 67 120 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 66 - u - - - ML 110 109 3 112 3 1 1 65 118 -10.757 -0.332 -2.288 0.008 0.096 -0.559 0.318 D 111 109 3 112 3 0 0 58 111 -8.217 -3.730 -0.118 IL 112 112 3 112 3 1 1 66 120 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 67 - G - - - ML 113 112 3 115 5 1 1 65 118 -1.651 -0.561 -9.215 -9.427 -10.319 -0.613 -1.255 1.054 -0.232 D 114 112 3 115 5 0 0 50 104 -8.293 -0.062 -7.555 -5.930 -5.842 IL 115 115 3 115 5 1 1 67 120 -0.498 -1.805 -8.244 -10.077 -9.350 0.000 0.000 0.000 0.000 [ MATP 32 ] 74 95 c g - - MP 116 115 3 120 6 2 2 32 51 -10.946 -10.885 -0.006 -9.661 -9.941 -10.336 -2.175 -1.986 -2.413 0.721 -2.808 -3.687 2.632 -2.327 -2.901 1.442 -3.473 -0.589 1.004 -2.250 -0.215 -1.367 ML 117 115 3 120 6 1 1 31 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 118 115 3 120 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 119 115 3 120 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 120 120 5 120 6 1 1 32 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 121 121 6 121 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 75 94 G C - - MP 122 121 6 126 6 2 2 30 49 -10.946 -10.885 -0.074 -4.498 -8.076 -10.336 -5.098 -2.284 -4.917 0.998 -6.046 -5.514 -1.113 -5.605 -4.433 3.476 -5.600 -0.532 0.017 -4.773 -2.502 -3.295 ML 123 121 6 126 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 124 121 6 126 6 1 1 29 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 125 121 6 126 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 126 126 5 126 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 127 127 6 127 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 76 93 c g - - MP 128 127 6 132 6 2 2 28 47 -10.878 -10.817 -0.372 -2.180 -7.788 -10.269 -3.414 -2.779 -3.576 1.848 -3.348 -3.882 2.237 -3.774 -3.618 1.122 -4.174 0.335 1.235 -3.715 -0.098 -2.429 ML 129 127 6 132 6 1 1 27 46 -7.856 -8.203 -0.315 -2.611 -8.052 -5.582 1.376 -1.192 -1.245 -0.876 MR 130 127 6 132 6 1 1 27 45 -7.139 -5.868 -1.352 -5.847 -0.981 -4.060 0.165 0.089 -0.508 0.153 D 131 127 6 132 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 132 132 5 132 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 133 133 6 133 5 1 1 28 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 77 92 u a - - MP 134 133 6 138 6 2 2 26 45 -3.413 -5.028 -0.198 -9.316 -9.596 -9.991 -1.358 -3.157 -2.652 1.341 -2.526 -4.035 0.982 -2.439 -3.224 0.061 -3.789 -1.090 2.965 -3.331 -0.706 -2.348 ML 135 133 6 138 6 1 1 25 43 -6.439 -10.050 -0.097 -4.458 -9.899 -7.429 1.257 -0.758 -1.882 -0.418 MR 136 133 6 138 6 1 1 25 44 -2.978 -5.901 -1.810 -5.879 -1.013 -4.093 0.119 -0.374 -0.470 0.506 D 137 133 6 138 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 138 138 5 138 6 1 1 26 44 -4.496 -0.423 -2.454 -6.414 -7.191 -6.851 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 1 25 43 -4.054 -0.141 -7.565 -5.732 -6.838 0.000 0.000 0.000 0.000 [ MATP 36 ] 79 90 G C - - MP 140 139 6 144 6 2 2 24 42 -10.946 -10.885 -0.006 -9.661 -9.941 -10.336 -8.098 -5.435 -8.871 0.448 -9.802 -6.842 -4.488 -8.942 -6.773 3.839 -7.041 -2.627 -4.765 -7.143 -6.744 -7.640 ML 141 139 6 144 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 142 139 6 144 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 143 139 6 144 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 144 144 5 144 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 80 89 G C - - MP 146 145 6 150 6 2 2 22 40 -10.946 -10.885 -0.006 -9.661 -9.941 -10.336 -8.861 -5.507 -11.012 -1.650 -10.411 -3.695 -4.754 -10.608 -6.880 3.944 -7.070 -3.442 -5.123 -7.123 -7.185 -10.133 ML 147 145 6 150 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 148 145 6 150 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 149 145 6 150 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 150 150 5 150 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 81 88 U G - - MP 152 151 6 156 4 2 2 20 38 -9.902 -10.109 -0.007 -8.523 -7.736 -8.005 -7.056 -4.242 -5.409 -7.203 -0.138 -6.323 -7.158 -4.218 -7.280 -6.387 -1.291 -7.574 3.855 -5.961 ML 153 151 6 156 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 154 151 6 156 4 1 1 22 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 155 151 6 156 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 156 156 5 156 4 1 1 24 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 157 157 6 157 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 82 - C - - - ML 158 157 6 160 3 1 1 17 35 -10.826 -0.003 -9.480 -6.186 1.982 -6.637 -5.288 D 159 157 6 160 3 0 0 18 36 -6.174 -1.687 -0.566 IL 160 160 3 160 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 83 - G - - - ML 161 160 3 163 3 1 1 15 34 -10.826 -0.006 -8.081 -5.533 -7.246 1.985 -6.283 D 162 160 3 163 3 0 0 17 35 -6.174 -1.687 -0.566 IL 163 163 3 163 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 84 - G - - - ML 164 163 3 166 3 1 1 14 33 -10.822 -0.003 -9.476 -4.392 -7.105 1.975 -6.187 D 165 163 3 166 3 0 0 15 34 -6.381 -1.313 -0.772 IL 166 166 3 166 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 85 - G - - - ML 167 166 3 169 3 1 1 13 31 -10.826 -0.003 -9.480 -5.533 -7.246 1.985 -6.283 D 168 166 3 169 3 0 0 15 33 -6.174 -1.687 -0.566 IL 169 169 3 169 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 86 - C - - - ML 170 169 3 172 3 1 1 11 29 -10.826 -0.003 -9.480 -6.186 1.982 -6.637 -5.288 D 171 169 3 172 3 0 0 13 32 -6.174 -1.687 -0.566 IL 172 172 3 172 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 87 - C - - - ML 173 172 3 175 2 1 1 1 1 * 0.000 -6.186 1.982 -6.637 -5.288 D 174 172 3 175 2 0 0 0 0 * 0.000 IL 175 175 3 175 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 45 ] - - - - - - E 176 175 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME nhaA-I ACC RF03057 DESC nhaA-I RNA LENG 56 MAXL 131 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Dec 21 11:32:17 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED NSEQ 281 EFFN 208.027298 CKSUM 1922787463 STATS LOCAL MSV -8.1422 0.72303 STATS LOCAL VITERBI -8.7183 0.72303 STATS LOCAL FORWARD -3.1855 0.72303 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.84542 1.34468 0.96482 1.60761 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 0.00000 * 1 4.98333 4.85561 0.02259 4.86578 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 1.09861 0.40547 2 7.13898 8.35486 0.00949 4.77715 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 1.09861 0.40547 3 7.13940 8.36779 0.00150 7.66587 3 G - - : 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 1.09861 0.40547 4 8.86503 8.00567 9.83331 0.00053 4 U - - : 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 1.09861 0.40547 5 4.49798 2.01042 0.25568 2.51892 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.00677 7.94874 5.05258 1.46634 0.26236 1.09861 0.40547 6 5.85318 0.46022 4.03187 1.05485 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.01249 7.94268 4.41825 1.46634 0.26236 0.10478 2.30779 7 1.81892 0.90456 1.13848 2.18237 7 c - - < 1.38629 1.38629 1.38629 1.38629 0.33916 7.93704 1.24732 1.46634 0.26236 0.25308 1.49794 8 2.18060 1.52079 0.67869 1.82508 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.06165 7.61227 2.82523 1.46634 0.26236 1.04242 0.43479 9 1.32100 1.55783 1.14342 1.59057 9 g - - < 1.38629 1.38629 1.38629 1.38629 0.01706 7.69133 4.10675 1.46634 0.26236 0.01234 4.40094 10 1.38074 1.32946 0.95197 2.32270 10 g - - < 1.38629 1.38629 1.38629 1.38629 0.10451 7.93417 2.31388 1.46634 0.26236 1.84878 0.17130 11 1.85644 1.32032 1.24576 1.24132 11 u - - < 1.38629 1.38629 1.38629 1.38629 0.17485 7.83280 1.83244 1.46634 0.26236 3.83080 0.02193 12 2.54645 1.05426 2.04759 0.81161 12 u - - < 1.38629 1.38629 1.38629 1.38629 0.21620 7.66163 1.64011 1.46634 0.26236 6.56497 0.00141 13 2.27361 0.85219 1.08798 2.01228 13 c - - < 1.38629 1.38629 1.38629 1.38629 1.54254 0.24133 7.44659 1.46799 0.26187 0.00179 6.32882 14 0.84490 1.59424 1.49529 1.94385 26 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 1.09861 0.40547 15 1.69093 1.18341 2.20475 0.91844 27 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 1.09861 0.40547 16 1.25234 1.31108 1.38495 1.63836 28 a - - _ 1.38629 1.38629 1.38629 1.38629 0.19939 7.94874 1.71247 1.46634 0.26236 1.09861 0.40547 17 1.32886 1.76499 1.22997 1.30294 29 g - - _ 1.38629 1.38629 1.38629 1.38629 0.18053 7.75021 1.80336 1.46634 0.26236 0.19517 1.72988 18 1.60446 1.86670 1.23810 1.03723 30 u - - _ 1.38629 1.38629 1.38629 1.38629 1.69507 0.41799 1.84488 1.51548 0.24808 2.14760 0.12416 19 2.45757 1.15248 0.76603 2.01255 50 g - - > 1.38629 1.38629 1.38629 1.38629 0.16091 7.62245 1.90960 1.46634 0.26236 0.92163 0.50728 20 0.93898 2.38157 0.89459 2.22758 51 g - - > 1.38629 1.38629 1.38629 1.38629 0.04945 7.62838 3.04147 1.46634 0.26236 0.53251 0.88462 21 1.29759 1.30285 1.27290 1.74277 52 g - - > 1.38629 1.38629 1.38629 1.38629 0.01187 7.78948 4.47520 1.46634 0.26236 0.09233 2.42815 22 2.33201 1.28663 1.22894 1.09632 53 u - - > 1.38629 1.38629 1.38629 1.38629 0.02443 7.92677 3.73902 1.46634 0.26236 0.03148 3.47415 23 1.16008 1.68556 1.23085 1.56469 54 a - - > 1.38629 1.38629 1.38629 1.38629 0.00773 7.92556 4.91518 1.46634 0.26236 0.15947 1.91459 24 1.86183 1.00931 1.39398 1.46078 55 c - - > 1.38629 1.38629 1.38629 1.38629 0.02685 7.93905 3.64437 1.46634 0.26236 0.06829 2.71800 25 2.67527 1.19426 0.78207 1.76771 56 g - - > 1.38629 1.38629 1.38629 1.38629 0.01353 7.92287 4.33665 1.46634 0.26236 0.02692 3.62845 26 1.69896 4.67806 0.23657 3.98994 57 G - - > 1.38629 1.38629 1.38629 1.38629 0.00072 7.93627 7.93627 1.46634 0.26236 0.05393 2.94700 27 3.69656 0.26585 1.66316 3.95810 58 C - - > 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 1.09861 0.40547 28 0.00122 8.15869 7.62873 7.70403 59 A - - - 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 1.09861 0.40547 29 7.13940 8.36779 0.00150 7.66587 60 G - - - 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 1.09861 0.40547 30 7.13940 8.36779 0.00150 7.66587 61 G - - - 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 1.09861 0.40547 31 1.83434 2.56729 2.71536 0.36046 62 U - - - 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 1.09861 0.40547 32 1.56000 1.48800 2.18501 0.79504 63 u - - - 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 1.09861 0.40547 33 1.12251 1.88501 1.60800 1.13189 64 a - - - 1.38629 1.38629 1.38629 1.38629 0.00501 7.94874 5.37255 1.46634 0.26236 1.09861 0.40547 34 1.09869 2.08498 2.35877 0.80330 65 u - - - 1.38629 1.38629 1.38629 1.38629 0.04711 7.94444 3.08651 1.46634 0.26236 2.71780 0.06830 35 1.44132 1.24996 1.79582 1.16835 66 u - - - 1.38629 1.38629 1.38629 1.38629 0.24554 7.89807 1.52627 1.46634 0.26236 4.96218 0.00702 36 2.01293 2.40846 0.56498 1.56983 67 G - - - 1.38629 1.38629 1.38629 1.38629 0.43744 1.03891 7.65349 1.34293 0.30257 0.00275 5.89580 37 2.30319 0.67410 1.49303 1.79725 74 C - - < 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 1.09861 0.40547 38 2.16017 5.18224 0.21035 2.67682 75 G - - < 1.38629 1.38629 1.38629 1.38629 0.00414 7.94874 5.57876 1.46634 0.26236 1.09861 0.40547 39 1.19345 1.15912 1.56875 1.74434 76 c - - < 1.38629 1.38629 1.38629 1.38629 0.00071 7.94531 7.94531 1.46634 0.26236 0.17140 1.84823 40 1.09777 2.45578 3.59946 0.59194 77 U - - < 1.38629 1.38629 1.38629 1.38629 0.10236 2.33366 7.94874 0.00727 4.92774 1.09861 0.40547 41 2.37048 7.04802 0.10018 6.88311 79 G - - < 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 1.09861 0.40547 42 4.08147 5.11718 0.02394 7.15141 80 G - - < 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 1.09861 0.40547 43 7.01894 3.38155 7.04821 0.03641 81 U - - < 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 1.09861 0.40547 44 8.11908 0.00119 8.53209 7.27102 82 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 1.09861 0.40547 45 7.13940 8.36779 0.00150 7.66587 83 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00315 7.94874 5.88083 1.46634 0.26236 1.09861 0.40547 46 4.77864 8.36940 0.00915 7.66144 84 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00071 7.94630 7.94630 1.46634 0.26236 0.22546 1.60023 47 7.13940 8.36779 0.00150 7.66587 85 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 1.09861 0.40547 48 8.11908 0.00119 8.53209 7.27102 86 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 1.09861 0.40547 49 8.11908 0.00119 8.53209 7.27102 87 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 1.09861 0.40547 50 4.23087 7.14678 0.01653 6.84495 88 G - - > 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 1.09861 0.40547 51 7.04360 0.01937 7.10753 4.04623 89 C - - > 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 1.09861 0.40547 52 6.79532 0.10578 6.92528 2.32002 90 C - - > 1.38629 1.38629 1.38629 1.38629 0.49218 2.08261 1.33141 0.00566 5.17751 1.09861 0.40547 53 0.34331 4.00840 2.58095 1.62601 92 A - - > 1.38629 1.38629 1.38629 1.38629 0.07840 7.64255 2.59129 1.46634 0.26236 0.00267 5.92685 54 2.05896 2.00299 0.97381 1.02210 93 g - - > 1.38629 1.38629 1.38629 1.38629 0.00075 7.89237 7.89237 1.46634 0.26236 0.01272 4.37083 55 2.79873 0.23561 4.41306 1.98846 94 C - - > 1.38629 1.38629 1.38629 1.38629 0.00071 7.94874 7.94874 1.46634 0.26236 1.09861 0.40547 56 2.24068 1.55932 0.60246 1.99603 95 G - - > 1.38629 1.38629 1.38629 1.38629 0.00035 7.94839 * 1.46634 0.26236 0.00000 * //