INFERNAL1/a [1.1.4 | Dec 2020] NAME Xanthine ACC RF03054 DESC Xanthine riboswitch (NMT1 RNA) STATES 172 NODES 43 CLEN 56 W 149 ALPH RNA RF no CONS yes MAP yes DATE Wed Sep 21 13:45:41 2022 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/14.9/3Dfams/RF03054/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 383 EFFN 54.166191 CKSUM 763090255 NULL 0.000 0.000 0.000 0.000 GA 36.00 TC 36.70 NC 35.60 EFP7GF -24.6177 0.72144 ECMLC 0.64974 -5.29682 2.74184 1600000 222597 0.005391 ECMGC 0.47161 -19.24475 -7.35651 1600000 108891 0.003673 ECMLI 0.63736 -4.62233 3.05494 1600000 160049 0.007498 ECMGI 0.49531 -15.47181 -4.70927 1600000 82638 0.004840 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 149 248 -10.933 -11.140 -0.006 -8.214 IL 1 1 2 1 4 1 16 151 250 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 15 151 250 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - u - - - ML 3 2 3 5 3 1 20 150 249 -11.846 -0.001 -10.500 0.196 -0.136 -0.432 0.267 D 4 2 3 5 3 0 6 147 246 -6.527 -2.040 -0.423 IL 5 5 3 5 3 1 15 150 249 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - g - - - ML 6 5 3 8 3 1 19 149 248 -11.846 -0.001 -10.500 -0.197 -0.202 0.526 -0.288 D 7 5 3 8 3 0 5 146 245 -6.527 -2.040 -0.423 IL 8 8 3 8 3 1 14 149 248 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - c - - - ML 9 8 3 11 3 1 18 148 247 -11.846 -0.001 -10.500 -0.111 0.579 -0.942 0.084 D 10 8 3 11 3 0 5 145 244 -6.527 -2.040 -0.423 IL 11 11 3 11 3 1 13 148 247 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - g - - - ML 12 11 3 14 3 1 18 147 246 -12.146 -0.001 -10.464 0.048 0.126 0.211 -0.480 D 13 11 3 14 3 0 5 144 244 -5.844 -0.958 -1.096 IL 14 14 3 14 3 1 11 147 246 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 122 - a - - MR 15 14 3 17 3 1 17 146 245 -12.146 -0.001 -10.464 0.777 -0.829 0.314 -1.056 D 16 14 3 17 3 0 4 143 242 -6.692 -1.870 -0.480 IR 17 17 3 17 3 1 9 146 245 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 121 - a - - MR 18 17 3 20 3 1 16 145 244 -12.146 -0.001 -10.464 0.889 -0.318 -0.705 -0.448 D 19 17 3 20 3 0 4 142 241 -6.692 -1.870 -0.480 IR 20 20 3 20 3 1 8 145 244 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 120 - g - - MR 21 20 3 23 3 1 15 144 243 -12.146 -0.001 -10.464 -0.223 -0.132 0.537 -0.358 D 22 20 3 23 3 0 3 141 240 -6.692 -1.870 -0.480 IR 23 23 3 23 3 1 7 144 243 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 119 - u - - MR 24 23 3 26 5 1 15 143 242 -10.793 -0.003 -10.609 -10.821 -11.712 -0.136 -1.237 0.151 0.638 D 25 23 3 26 5 0 3 140 239 -5.529 -0.884 -3.156 -2.669 -2.581 IR 26 26 3 26 5 1 6 142 242 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 5 118 a u - - MP 27 26 3 31 6 2 15 142 241 -11.840 -11.780 -0.003 -10.556 -10.836 -11.231 -0.049 -3.463 -3.007 1.892 -0.994 -1.870 0.354 -0.392 -2.832 0.824 -4.087 -1.121 1.807 -2.305 -0.181 0.355 ML 28 26 3 31 6 1 5 139 238 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 3 31 6 1 5 139 238 -7.179 -5.908 -1.292 -5.887 -1.020 -4.100 0.123 0.165 -0.557 0.150 D 30 26 3 31 6 0 3 134 233 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 5 141 240 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 5 140 240 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 6 117 G C - - MP 33 32 6 37 6 2 14 140 239 -11.843 -11.782 -0.003 -10.559 -10.839 -11.234 -9.664 -6.438 -11.320 -3.872 -10.538 -7.606 -0.720 -10.832 -7.779 3.928 -7.979 -4.357 -5.828 -8.060 -7.654 -10.264 ML 34 32 6 37 6 1 5 137 236 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 5 137 236 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 2 133 232 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 5 139 238 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 5 139 238 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 7 116 A U - - MP 39 38 6 43 6 2 13 138 237 -11.843 -11.782 -0.003 -10.559 -10.839 -11.234 -8.068 -6.754 -7.170 3.952 -10.282 -11.277 -5.882 -7.088 -7.836 -1.789 -8.489 -2.753 -5.813 -9.525 -7.687 -6.367 ML 40 38 6 43 6 1 4 135 234 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 4 135 234 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 2 131 230 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 5 137 236 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 5 137 236 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 8 115 G C - - MP 45 44 6 49 6 2 11 136 235 -11.843 -11.782 -0.003 -10.559 -10.839 -11.234 -9.735 -6.409 -11.854 -3.866 -11.347 -7.585 -5.692 -11.384 -7.774 3.983 -7.971 -4.333 -6.057 -8.047 -8.127 -10.853 ML 46 44 6 49 6 1 4 134 233 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 4 133 232 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 1 130 229 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 5 135 234 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 5 135 234 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 9 114 U G - - MP 51 50 6 55 6 2 10 134 233 -11.843 -11.782 -0.003 -10.559 -10.839 -11.234 -8.751 -8.971 -2.847 -5.212 -6.448 -8.241 -1.499 -7.354 -8.178 -5.204 -8.305 -7.275 -3.178 -8.605 3.935 -6.983 ML 52 50 6 55 6 1 4 132 231 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 4 131 230 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 1 129 228 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 5 133 232 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 5 133 232 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 10 113 A U - - MP 57 56 6 61 4 2 8 132 231 -10.933 -11.140 -0.003 -9.554 -8.882 -3.731 -6.380 3.979 -10.697 -11.336 -6.761 -6.229 -8.700 -4.323 -9.284 -4.705 -6.727 -10.182 -8.468 -6.101 ML 58 56 6 61 4 1 4 131 230 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 4 1 2 129 229 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 60 56 6 61 4 0 1 128 227 -4.568 -4.250 -2.265 -0.520 IL 61 61 5 61 4 1 4 131 231 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 62 62 6 62 3 1 4 131 230 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 11 - G - - - ML 63 62 6 65 3 1 7 130 229 -11.849 -0.001 -10.503 -4.141 -6.299 1.814 -1.274 D 64 62 6 65 3 0 0 127 226 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 4 130 229 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 12 - A - - - ML 66 65 3 68 3 1 7 129 228 -11.849 -0.001 -10.503 1.994 -7.977 -7.251 -7.388 D 67 65 3 68 3 0 0 126 225 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 4 129 228 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 13 - A - - - ML 69 68 3 71 3 1 6 128 227 -11.849 -0.001 -10.503 1.980 -7.352 -6.963 -4.653 D 70 68 3 71 3 0 0 125 224 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 4 128 227 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 14 - G - - - ML 72 71 3 74 3 1 6 127 226 -11.849 -0.001 -10.503 -6.482 -8.246 1.992 -7.243 D 73 71 3 74 3 0 0 124 223 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 3 127 226 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - C - - - ML 75 74 3 77 3 1 5 126 225 -11.849 -0.001 -10.503 -7.336 1.992 -7.805 -6.371 D 76 74 3 77 3 0 0 123 222 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 2 126 225 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - G - - - ML 78 77 3 80 3 1 5 125 224 -11.849 -0.001 -10.503 -1.802 -3.548 1.751 -1.939 D 79 77 3 80 3 0 0 123 222 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 2 125 224 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - G - - - ML 81 80 3 83 3 1 4 124 223 -12.149 -0.001 -10.467 -5.566 -6.329 1.352 0.500 D 82 80 3 83 3 0 0 122 221 -5.620 -0.734 -1.403 IL 83 83 3 83 3 1 1 124 223 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 112 - U - - MR 84 83 3 86 3 1 4 123 222 -12.149 -0.001 -10.467 -7.999 -7.179 -9.028 1.995 D 85 83 3 86 3 0 0 120 219 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 1 123 222 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 111 - A - - MR 87 86 3 89 3 1 4 122 221 -12.149 -0.001 -10.467 1.980 -7.514 -4.534 -7.093 D 88 86 3 89 3 0 0 119 219 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 1 122 221 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 110 - C - - MR 90 89 3 92 5 1 4 121 220 -10.796 -0.003 -10.612 -10.824 -11.715 0.104 1.534 -7.025 -5.576 D 91 89 3 92 5 0 0 119 218 -5.352 -0.707 -2.978 -4.409 -2.404 IR 92 92 3 92 5 1 1 121 220 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 18 109 U A - - MP 93 92 3 97 6 2 4 120 219 -11.843 -11.782 -0.003 -10.559 -10.839 -11.234 -8.572 -8.749 -7.974 -4.892 -4.039 -8.175 -0.241 -7.264 -8.052 -4.809 -8.212 -2.253 3.265 -8.455 0.733 1.810 ML 94 92 3 97 6 1 1 118 217 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 3 97 6 1 1 118 217 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 3 97 6 0 0 115 214 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 119 218 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 119 218 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 19 108 C G - - MP 99 98 6 103 4 2 2 118 217 -10.933 -11.140 -0.003 -9.554 -8.765 -9.044 -8.083 -5.280 -6.434 -8.228 3.798 -7.349 -8.186 -5.253 -8.307 -7.443 -3.166 -8.600 0.911 -6.988 ML 100 98 6 103 4 1 1 117 216 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 4 1 1 116 215 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 102 98 6 103 4 0 0 115 214 -4.568 -4.250 -2.265 -0.520 IL 103 103 5 103 4 1 1 118 217 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 104 104 6 104 3 1 1 117 216 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 20 - A - - - ML 105 104 6 107 3 1 1 116 215 -12.149 -0.001 -10.467 1.856 -3.942 -3.235 -2.254 D 106 104 6 107 3 0 0 114 213 -5.620 -0.734 -1.403 IL 107 107 3 107 3 1 1 116 215 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 107 - G - - MR 108 107 3 110 3 1 1 115 214 -12.149 -0.005 -8.323 -6.482 -8.246 1.992 -7.243 D 109 107 3 110 3 0 0 112 211 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 1 115 214 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 106 - G - - MR 111 110 3 113 5 1 1 114 213 -2.819 -0.223 -10.608 -10.820 -11.712 -1.336 -0.179 1.300 -1.952 D 112 110 3 113 5 0 0 111 210 -5.562 -0.589 -3.188 -4.619 -2.614 IR 113 113 3 113 5 1 1 113 212 -5.027 -0.070 -8.538 -6.706 -7.812 0.000 0.000 0.000 0.000 [ MATP 30 ] 21 104 G C - - MP 114 113 3 118 6 2 2 112 211 -11.843 -11.782 -0.006 -10.559 -10.839 -8.596 -5.995 -1.437 -5.821 0.501 -6.964 -6.436 -0.007 -4.241 -6.237 3.243 -6.494 1.724 -2.296 -5.691 -4.040 -4.779 ML 115 113 3 118 6 1 1 110 209 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 3 118 6 1 1 110 209 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 3 118 6 0 0 105 204 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 112 211 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 111 210 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 22 103 c g - - MP 120 119 6 124 6 2 2 110 209 -5.005 -11.779 -0.094 -6.724 -5.888 -7.477 -6.160 -5.873 -6.165 0.051 -5.051 -7.009 2.993 -5.700 -6.028 0.631 -6.543 -1.546 2.000 -6.347 -0.256 -2.921 ML 121 119 6 124 6 1 1 109 208 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 108 207 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 103 202 -9.365 -8.063 -3.860 -4.542 -4.560 -0.251 IL 124 124 5 124 6 1 1 110 209 -1.677 -4.892 -0.670 -6.548 -7.324 -6.984 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 109 209 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 25 102 a u - - MP 126 125 6 130 6 2 2 108 207 -11.796 -3.027 -0.275 -6.020 -8.447 -4.961 -3.454 -0.603 -2.804 2.163 -2.808 -2.455 1.521 -2.849 -3.720 2.138 -3.673 0.101 0.092 -3.185 -1.484 -2.894 ML 127 125 6 130 6 1 1 107 206 -7.080 -7.426 -0.590 -1.834 -7.276 -4.805 0.423 -0.905 0.400 -0.312 MR 128 125 6 130 6 1 1 107 206 -8.161 -3.649 -0.669 -6.868 -2.002 -5.081 -0.267 -0.409 -0.697 0.847 D 129 125 6 130 6 0 0 101 201 -9.920 -2.875 -4.416 -5.098 -2.669 -0.668 IL 130 130 5 130 6 1 1 108 207 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 108 207 -2.159 -0.392 -8.791 -6.959 -8.064 0.000 0.000 0.000 0.000 [ MATP 33 ] 26 98 c g - - MP 132 131 6 136 6 2 2 106 205 -11.766 -11.705 -0.121 -8.547 -6.999 -3.846 -1.552 -2.300 -3.388 0.343 0.191 -2.754 2.080 -2.097 -3.006 1.827 -2.875 -1.021 1.746 -3.024 -1.310 -2.660 ML 133 131 6 136 6 1 1 105 204 -7.427 -7.773 -0.598 -1.758 -7.623 -5.153 0.064 0.152 -0.574 0.229 MR 134 131 6 136 6 1 1 105 204 -7.401 -6.130 -1.459 -6.108 -0.859 -4.322 -0.076 0.491 -0.779 0.088 D 135 131 6 136 6 0 0 90 190 -11.314 -10.012 -5.809 -6.492 -6.509 -0.061 IL 136 136 5 136 6 1 1 106 205 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 106 205 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 27 97 g c - - MP 138 137 6 142 6 2 2 105 204 -11.672 -11.611 -0.158 -7.018 -4.518 -4.265 -1.933 -2.571 -2.489 1.239 -2.597 -0.592 2.003 -3.172 -3.379 2.118 -3.313 -0.539 0.911 -3.452 -0.937 -1.460 ML 139 137 6 142 6 1 1 104 203 -6.668 -7.014 -0.854 -1.423 -6.864 -4.393 -0.039 0.435 -0.738 0.105 MR 140 137 6 142 6 1 1 104 203 -7.753 -6.482 -0.731 -6.460 -1.594 -4.674 0.435 -0.188 -0.701 0.208 D 141 137 6 142 6 0 0 87 186 -12.657 -11.355 -7.152 -7.834 -7.852 -0.024 IL 142 142 5 142 6 1 1 104 203 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 104 203 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 28 96 g c - - MP 144 143 6 148 6 2 2 103 202 -11.540 -11.479 -0.614 -4.729 -6.151 -1.765 -3.012 -1.445 -3.210 0.843 -2.869 -3.313 1.793 -1.768 -2.562 2.189 -1.850 -0.244 1.379 -3.351 -0.759 -1.096 ML 145 143 6 148 6 1 1 103 202 -6.880 -7.227 -0.989 -1.209 -7.076 -4.606 0.255 -0.100 -0.666 0.315 MR 146 143 6 148 6 1 1 103 202 -8.966 -7.695 -3.102 -7.673 -0.226 -5.887 -1.370 -1.118 -2.109 1.546 D 147 143 6 148 6 0 0 84 183 -13.166 -11.864 -7.661 -8.343 -8.361 -0.017 IL 148 148 5 148 6 1 1 104 203 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 104 203 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 29 95 c g - - MP 150 149 6 154 4 2 2 103 202 -0.358 -5.365 -2.374 -8.526 -1.883 -2.369 -2.776 1.359 -2.323 -2.527 1.743 -2.501 -2.843 1.663 -2.866 -1.118 1.409 -2.917 0.995 -2.044 ML 151 149 6 154 4 1 1 101 200 -0.604 -3.958 -2.139 -4.303 -0.103 -0.522 0.120 0.363 MR 152 149 6 154 4 1 1 102 201 -0.351 -6.216 -3.487 -3.144 1.254 -0.509 -1.447 -0.874 D 153 149 6 154 4 0 0 82 181 -7.362 -2.802 -0.262 -5.891 IL 154 154 5 154 4 1 1 102 201 -0.309 -2.395 -8.538 -12.275 0.000 0.000 0.000 0.000 IR 155 155 6 155 3 1 1 91 190 -0.269 -2.559 -10.956 0.000 0.000 0.000 0.000 [ MATL 37 ] 54 - c - - - ML 156 155 6 158 3 1 1 15 33 -11.849 -0.001 -10.503 -0.064 0.359 0.145 -0.610 D 157 155 6 158 3 0 0 16 35 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 55 - u - - - ML 159 158 3 161 3 1 1 13 32 -11.849 -0.001 -10.503 -0.255 0.318 -0.960 0.487 D 160 158 3 161 3 0 0 15 34 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 56 - a - - - ML 162 161 3 164 3 1 1 12 30 -11.849 -0.229 -2.768 0.345 -0.200 -0.534 0.225 D 163 161 3 164 3 0 0 14 33 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 57 - a - - - ML 165 164 3 167 3 1 1 11 29 -11.621 -0.589 -1.578 0.535 -0.087 -0.344 -0.283 D 166 164 3 167 3 0 0 10 29 -10.564 -6.077 -0.023 IL 167 167 3 167 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 58 - u - - - ML 168 167 3 170 2 1 1 1 1 * 0.000 0.074 -0.093 -0.814 0.528 D 169 167 3 170 2 0 0 0 0 * 0.000 IL 170 170 3 170 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 171 170 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME Xanthine ACC RF03054 DESC Xanthine riboswitch (NMT1 RNA) LENG 56 MAXL 151 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Sep 21 13:45:41 2022 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED NSEQ 383 EFFN 383.000000 CKSUM 763090255 STATS LOCAL MSV -7.6139 0.72144 STATS LOCAL VITERBI -8.5097 0.72144 STATS LOCAL FORWARD -3.8795 0.72144 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.41231 1.47727 1.19867 1.48473 1.38629 1.38629 1.38629 1.38629 0.00052 8.25428 8.25428 1.46634 0.26236 0.00000 * 1 1.25998 1.46014 1.68570 1.20791 1 u - - : 1.38629 1.38629 1.38629 1.38629 0.00052 8.25428 8.25428 1.46634 0.26236 1.09861 0.40547 2 1.57505 1.50666 0.96736 1.65408 2 g - - : 1.38629 1.38629 1.38629 1.38629 0.00052 8.25428 8.25428 1.46634 0.26236 1.09861 0.40547 3 1.49696 0.93247 2.08485 1.35369 3 c - - : 1.38629 1.38629 1.38629 1.38629 0.00052 8.25428 8.25428 1.46634 0.26236 1.09861 0.40547 4 1.37681 1.25836 1.19528 1.82711 4 g - - : 1.38629 1.38629 1.38629 1.38629 0.00052 8.25428 8.25428 1.46634 0.26236 1.09861 0.40547 5 1.11242 1.85131 2.03867 0.95710 5 u - - < 1.38629 1.38629 1.38629 1.38629 0.00052 8.25428 8.25428 1.46634 0.26236 1.09861 0.40547 6 7.05907 3.19712 0.04295 8.10000 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 7 0.02593 8.15882 3.69363 7.74536 7 A - - < 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 8 7.04010 8.12814 0.00146 8.15169 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 9 4.70242 4.54377 7.80245 0.02032 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 10 0.00265 8.13419 6.26044 7.72611 10 A - - < 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 11 4.75107 8.28862 0.12803 2.19570 11 G - - - 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 12 0.00069 8.73700 8.20783 8.27757 12 A - - - 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 13 0.01095 8.61839 8.18708 4.56284 13 A - - - 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 14 7.73575 8.96120 0.00082 8.25967 14 G - - - 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 15 8.90134 0.00057 9.37874 7.94978 15 C - - - 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 16 2.78355 4.24101 0.14665 2.81028 16 G - - - 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 17 8.42822 8.65648 0.46485 0.99053 17 G - - - 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 18 7.96569 3.11603 4.31465 0.05980 18 U - - < 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 19 7.92158 0.12722 7.85203 2.13110 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 20 0.08351 4.68275 3.81687 3.01863 20 A - - - 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 21 2.34319 2.81235 0.17201 6.24194 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.00300 8.25635 5.90176 1.46634 0.26236 1.09861 0.40547 22 2.87576 0.64387 2.21795 1.17267 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.06202 3.34236 3.69770 0.45641 1.00391 2.52843 0.08315 23 1.00206 1.60384 0.96897 2.95112 25 g - - < 1.38629 1.38629 1.38629 1.38629 0.03911 8.22904 3.26795 1.46634 0.26236 0.26124 1.47008 24 2.42231 0.92757 1.27552 1.44188 26 c - - < 1.38629 1.38629 1.38629 1.38629 0.08916 8.21276 2.46475 1.46634 0.26236 2.80013 0.06273 25 1.76213 1.09666 1.02918 1.98751 27 g - - < 1.38629 1.38629 1.38629 1.38629 0.11386 8.12691 2.23194 1.46634 0.26236 2.44237 0.09097 26 2.09185 1.37373 0.88469 1.55808 28 g - - < 1.38629 1.38629 1.38629 1.38629 0.40885 8.02684 1.09284 1.46634 0.26236 1.56444 0.23472 27 1.70801 1.43970 1.34007 1.13960 29 u - - < 1.38629 1.38629 1.38629 1.38629 1.84713 0.17214 7.69682 1.63746 0.21626 0.00121 6.71760 28 1.46469 1.08669 1.24504 1.94079 54 c - - _ 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 29 1.61952 1.12436 2.10399 1.03514 55 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 30 1.14202 1.50899 1.76771 1.24143 56 a - - _ 1.38629 1.38629 1.38629 1.38629 0.16349 8.25635 1.89337 1.46634 0.26236 1.09861 0.40547 31 0.99140 1.41662 1.61592 1.67289 57 a - - _ 1.38629 1.38629 1.38629 1.38629 0.18837 8.09347 1.76385 1.46634 0.26236 2.15180 0.12361 32 1.37177 1.41617 2.02338 0.99023 58 u - - _ 1.38629 1.38629 1.38629 1.38629 2.35894 0.35944 1.57305 1.81433 0.17787 1.47368 0.26017 33 1.43330 1.40434 1.06595 1.76286 95 g - - > 1.38629 1.38629 1.38629 1.38629 0.05961 7.80365 2.85664 1.46634 0.26236 0.45586 1.00485 34 1.82222 1.04886 1.36144 1.46230 96 c - - > 1.38629 1.38629 1.38629 1.38629 0.00588 8.07081 5.19439 1.46634 0.26236 1.06660 0.42186 35 2.09740 0.98855 1.20800 1.57836 97 c - - > 1.38629 1.38629 1.38629 1.38629 0.01686 8.13373 4.10892 1.46634 0.26236 0.42866 1.05378 36 1.11292 1.29966 1.19124 2.35456 98 a - - > 1.38629 1.38629 1.38629 1.38629 0.17178 1.93519 4.30991 0.26692 1.45130 0.07528 2.62399 37 3.08316 1.01539 1.63533 0.92373 102 u - - > 1.38629 1.38629 1.38629 1.38629 0.00305 8.24030 5.88571 1.46634 0.26236 0.03159 3.47063 38 1.37329 2.40911 0.55431 2.49657 103 G - - > 1.38629 1.38629 1.38629 1.38629 0.00052 8.25387 8.25387 1.46634 0.26236 0.17384 1.83528 39 6.48217 0.45146 2.85872 1.18931 104 C - - > 1.38629 1.38629 1.38629 1.38629 0.16295 1.91306 5.90172 0.00351 5.65295 1.09861 0.40547 40 2.41786 1.44845 0.47726 2.89181 106 G - - - 1.38629 1.38629 1.38629 1.38629 0.00052 8.25387 8.25387 1.46634 0.26236 0.17383 1.83531 41 7.73575 8.96120 0.00082 8.25967 107 G - - - 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 42 6.71009 7.99188 0.00201 7.69841 108 G - - > 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 43 0.48454 8.02187 1.93227 1.43183 109 A - - > 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 44 1.27295 0.32921 9.07119 7.84879 110 C - - - 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 45 0.01136 8.64952 4.52285 8.23884 111 A - - - 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 46 9.57890 8.65967 10.62061 0.00027 112 U - - - 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 47 7.84932 4.38422 7.88522 0.01333 113 U - - > 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 48 6.68366 7.92646 0.00210 7.62776 114 G - - > 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 49 8.13702 0.00185 8.03553 6.69864 115 C - - > 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 50 7.83899 4.05996 7.88250 0.01819 116 U - - > 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 51 8.04460 0.04341 3.19600 6.69837 117 C - - > 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 52 1.07651 2.01683 2.28031 0.85828 118 u - - > 1.38629 1.38629 1.38629 1.38629 0.00052 8.25428 8.25428 1.46634 0.26236 1.09861 0.40547 53 1.53072 2.36210 1.23941 0.91668 119 u - - : 1.38629 1.38629 1.38629 1.38629 0.00052 8.25428 8.25428 1.46634 0.26236 1.09861 0.40547 54 1.59544 1.45235 0.96039 1.71248 120 g - - : 1.38629 1.38629 1.38629 1.38629 0.00052 8.25428 8.25428 1.46634 0.26236 1.09861 0.40547 55 0.72862 1.59840 1.90210 1.79605 121 a - - : 1.38629 1.38629 1.38629 1.38629 0.00052 8.25428 8.25428 1.46634 0.26236 1.09861 0.40547 56 0.81521 1.99463 1.12820 2.32509 122 a - - : 1.38629 1.38629 1.38629 1.38629 0.00026 8.25402 * 1.46634 0.26236 0.00000 * //