INFERNAL1/a [1.1.5 | Sep 2023] NAME Xanthine ACC RF03054 DESC Xanthine riboswitch aptamer (NMT1 RNA) STATES 172 NODES 43 CLEN 56 W 149 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 14:29:56 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/14.9/3Dfams/RF03054/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 383 EFFN 54.166191 CKSUM 763090255 NULL 0.000 0.000 0.000 0.000 GA 36.00 TC 36.20 NC 35.90 EFP7GF -24.6177 0.72144 ECMLC 0.64974 -5.29682 2.74184 1600000 222597 0.005391 ECMGC 0.47161 -19.24475 -7.35651 1600000 108891 0.003673 ECMLI 0.63736 -4.62233 3.05494 1600000 160049 0.007498 ECMGI 0.49531 -15.47181 -4.70927 1600000 82638 0.004840 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 149 248 -10.933 -11.140 -0.006 -8.214 IL 1 1 2 1 4 1 16 151 250 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 15 151 250 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - u - - - ML 3 2 3 5 3 1 20 150 249 -11.846 -0.001 -10.500 0.196 -0.136 -0.432 0.267 D 4 2 3 5 3 0 6 147 246 -6.527 -2.040 -0.423 IL 5 5 3 5 3 1 15 150 249 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - g - - - ML 6 5 3 8 3 1 19 149 248 -11.846 -0.001 -10.500 -0.197 -0.202 0.526 -0.288 D 7 5 3 8 3 0 5 146 245 -6.527 -2.040 -0.423 IL 8 8 3 8 3 1 14 149 248 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - c - - - ML 9 8 3 11 3 1 18 148 247 -11.846 -0.001 -10.500 -0.111 0.579 -0.942 0.084 D 10 8 3 11 3 0 5 145 244 -6.527 -2.040 -0.423 IL 11 11 3 11 3 1 13 148 247 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - g - - - ML 12 11 3 14 3 1 18 147 246 -12.146 -0.001 -10.464 0.048 0.126 0.211 -0.480 D 13 11 3 14 3 0 5 144 244 -5.844 -0.958 -1.096 IL 14 14 3 14 3 1 11 147 246 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 122 - a - - MR 15 14 3 17 3 1 17 146 245 -12.146 -0.001 -10.464 0.777 -0.829 0.314 -1.056 D 16 14 3 17 3 0 4 143 242 -6.692 -1.870 -0.480 IR 17 17 3 17 3 1 9 146 245 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 121 - a - - MR 18 17 3 20 3 1 16 145 244 -12.146 -0.001 -10.464 0.889 -0.318 -0.705 -0.448 D 19 17 3 20 3 0 4 142 241 -6.692 -1.870 -0.480 IR 20 20 3 20 3 1 8 145 244 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 120 - g - - MR 21 20 3 23 3 1 15 144 243 -12.146 -0.001 -10.464 -0.223 -0.132 0.537 -0.358 D 22 20 3 23 3 0 3 141 240 -6.692 -1.870 -0.480 IR 23 23 3 23 3 1 7 144 243 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 119 - u - - MR 24 23 3 26 5 1 15 143 242 -10.793 -0.003 -10.609 -10.821 -11.712 -0.136 -1.237 0.151 0.638 D 25 23 3 26 5 0 3 140 239 -5.529 -0.884 -3.156 -2.669 -2.581 IR 26 26 3 26 5 1 6 142 242 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 5 118 a u - - MP 27 26 3 31 6 2 15 142 241 -11.840 -11.780 -0.003 -10.556 -10.836 -11.231 -0.049 -3.463 -3.007 1.892 -0.994 -1.870 0.354 -0.392 -2.832 0.824 -4.087 -1.121 1.807 -2.305 -0.181 0.355 ML 28 26 3 31 6 1 5 139 238 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 3 31 6 1 5 139 238 -7.179 -5.908 -1.292 -5.887 -1.020 -4.100 0.123 0.165 -0.557 0.150 D 30 26 3 31 6 0 3 134 233 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 5 141 240 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 5 140 240 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 6 117 G C - - MP 33 32 6 37 6 2 14 140 239 -11.843 -11.782 -0.003 -10.559 -10.839 -11.234 -9.664 -6.438 -11.320 -3.872 -10.538 -7.606 -0.720 -10.832 -7.779 3.928 -7.979 -4.357 -5.828 -8.060 -7.654 -10.264 ML 34 32 6 37 6 1 5 137 236 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 5 137 236 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 2 133 232 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 5 139 238 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 5 139 238 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 7 116 A U - - MP 39 38 6 43 6 2 13 138 237 -11.843 -11.782 -0.003 -10.559 -10.839 -11.234 -8.068 -6.754 -7.170 3.952 -10.282 -11.277 -5.882 -7.088 -7.836 -1.789 -8.489 -2.753 -5.813 -9.525 -7.687 -6.367 ML 40 38 6 43 6 1 4 135 234 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 4 135 234 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 2 131 230 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 5 137 236 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 5 137 236 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 8 115 G C - - MP 45 44 6 49 6 2 11 136 235 -11.843 -11.782 -0.003 -10.559 -10.839 -11.234 -9.735 -6.409 -11.854 -3.866 -11.347 -7.585 -5.692 -11.384 -7.774 3.983 -7.971 -4.333 -6.057 -8.047 -8.127 -10.853 ML 46 44 6 49 6 1 4 134 233 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 4 133 232 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 1 130 229 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 5 135 234 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 5 135 234 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 9 114 U G - - MP 51 50 6 55 6 2 10 134 233 -11.843 -11.782 -0.003 -10.559 -10.839 -11.234 -8.751 -8.971 -2.847 -5.212 -6.448 -8.241 -1.499 -7.354 -8.178 -5.204 -8.305 -7.275 -3.178 -8.605 3.935 -6.983 ML 52 50 6 55 6 1 4 132 231 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 4 131 230 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 1 129 228 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 5 133 232 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 5 133 232 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 10 113 A U - - MP 57 56 6 61 4 2 8 132 231 -10.933 -11.140 -0.003 -9.554 -8.882 -3.731 -6.380 3.979 -10.697 -11.336 -6.761 -6.229 -8.700 -4.323 -9.284 -4.705 -6.727 -10.182 -8.468 -6.101 ML 58 56 6 61 4 1 4 131 230 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 4 1 2 129 229 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 60 56 6 61 4 0 1 128 227 -4.568 -4.250 -2.265 -0.520 IL 61 61 5 61 4 1 4 131 231 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 62 62 6 62 3 1 4 131 230 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 11 - G - - - ML 63 62 6 65 3 1 7 130 229 -11.849 -0.001 -10.503 -4.141 -6.299 1.814 -1.274 D 64 62 6 65 3 0 0 127 226 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 4 130 229 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 12 - A - - - ML 66 65 3 68 3 1 7 129 228 -11.849 -0.001 -10.503 1.994 -7.977 -7.251 -7.388 D 67 65 3 68 3 0 0 126 225 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 4 129 228 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 13 - A - - - ML 69 68 3 71 3 1 6 128 227 -11.849 -0.001 -10.503 1.980 -7.352 -6.963 -4.653 D 70 68 3 71 3 0 0 125 224 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 4 128 227 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 14 - G - - - ML 72 71 3 74 3 1 6 127 226 -11.849 -0.001 -10.503 -6.482 -8.246 1.992 -7.243 D 73 71 3 74 3 0 0 124 223 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 3 127 226 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - C - - - ML 75 74 3 77 3 1 5 126 225 -11.849 -0.001 -10.503 -7.336 1.992 -7.805 -6.371 D 76 74 3 77 3 0 0 123 222 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 2 126 225 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - G - - - ML 78 77 3 80 3 1 5 125 224 -11.849 -0.001 -10.503 -1.802 -3.548 1.751 -1.939 D 79 77 3 80 3 0 0 123 222 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 2 125 224 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - G - - - ML 81 80 3 83 3 1 4 124 223 -12.149 -0.001 -10.467 -5.566 -6.329 1.352 0.500 D 82 80 3 83 3 0 0 122 221 -5.620 -0.734 -1.403 IL 83 83 3 83 3 1 1 124 223 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 112 - U - - MR 84 83 3 86 3 1 4 123 222 -12.149 -0.001 -10.467 -7.999 -7.179 -9.028 1.995 D 85 83 3 86 3 0 0 120 219 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 1 123 222 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 111 - A - - MR 87 86 3 89 3 1 4 122 221 -12.149 -0.001 -10.467 1.980 -7.514 -4.534 -7.093 D 88 86 3 89 3 0 0 119 219 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 1 122 221 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 110 - C - - MR 90 89 3 92 5 1 4 121 220 -10.796 -0.003 -10.612 -10.824 -11.715 0.104 1.534 -7.025 -5.576 D 91 89 3 92 5 0 0 119 218 -5.352 -0.707 -2.978 -4.409 -2.404 IR 92 92 3 92 5 1 1 121 220 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 18 109 U A - - MP 93 92 3 97 6 2 4 120 219 -11.843 -11.782 -0.003 -10.559 -10.839 -11.234 -8.572 -8.749 -7.974 -4.892 -4.039 -8.175 -0.241 -7.264 -8.052 -4.809 -8.212 -2.253 3.265 -8.455 0.733 1.810 ML 94 92 3 97 6 1 1 118 217 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 3 97 6 1 1 118 217 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 3 97 6 0 0 115 214 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 119 218 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 119 218 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 19 108 C G - - MP 99 98 6 103 4 2 2 118 217 -10.933 -11.140 -0.003 -9.554 -8.765 -9.044 -8.083 -5.280 -6.434 -8.228 3.798 -7.349 -8.186 -5.253 -8.307 -7.443 -3.166 -8.600 0.911 -6.988 ML 100 98 6 103 4 1 1 117 216 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 4 1 1 116 215 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 102 98 6 103 4 0 0 115 214 -4.568 -4.250 -2.265 -0.520 IL 103 103 5 103 4 1 1 118 217 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 104 104 6 104 3 1 1 117 216 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 20 - A - - - ML 105 104 6 107 3 1 1 116 215 -12.149 -0.001 -10.467 1.856 -3.942 -3.235 -2.254 D 106 104 6 107 3 0 0 114 213 -5.620 -0.734 -1.403 IL 107 107 3 107 3 1 1 116 215 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 107 - G - - MR 108 107 3 110 3 1 1 115 214 -12.149 -0.005 -8.323 -6.482 -8.246 1.992 -7.243 D 109 107 3 110 3 0 0 112 211 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 1 115 214 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 106 - G - - MR 111 110 3 113 5 1 1 114 213 -2.819 -0.223 -10.608 -10.820 -11.712 -1.336 -0.179 1.300 -1.952 D 112 110 3 113 5 0 0 111 210 -5.562 -0.589 -3.188 -4.619 -2.614 IR 113 113 3 113 5 1 1 113 212 -5.027 -0.070 -8.538 -6.706 -7.812 0.000 0.000 0.000 0.000 [ MATP 30 ] 21 104 G C - - MP 114 113 3 118 6 2 2 112 211 -11.843 -11.782 -0.006 -10.559 -10.839 -8.596 -5.995 -1.437 -5.821 0.501 -6.964 -6.436 -0.007 -4.241 -6.237 3.243 -6.494 1.724 -2.296 -5.691 -4.040 -4.779 ML 115 113 3 118 6 1 1 110 209 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 3 118 6 1 1 110 209 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 3 118 6 0 0 105 204 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 112 211 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 111 210 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 22 103 c g - - MP 120 119 6 124 6 2 2 110 209 -5.005 -11.779 -0.094 -6.724 -5.888 -7.477 -6.160 -5.873 -6.165 0.051 -5.051 -7.009 2.993 -5.700 -6.028 0.631 -6.543 -1.546 2.000 -6.347 -0.256 -2.921 ML 121 119 6 124 6 1 1 109 208 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 108 207 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 103 202 -9.365 -8.063 -3.860 -4.542 -4.560 -0.251 IL 124 124 5 124 6 1 1 110 209 -1.677 -4.892 -0.670 -6.548 -7.324 -6.984 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 109 209 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 25 102 a u - - MP 126 125 6 130 6 2 2 108 207 -11.796 -3.027 -0.275 -6.020 -8.447 -4.961 -3.454 -0.603 -2.804 2.163 -2.808 -2.455 1.521 -2.849 -3.720 2.138 -3.673 0.101 0.092 -3.185 -1.484 -2.894 ML 127 125 6 130 6 1 1 107 206 -7.080 -7.426 -0.590 -1.834 -7.276 -4.805 0.423 -0.905 0.400 -0.312 MR 128 125 6 130 6 1 1 107 206 -8.161 -3.649 -0.669 -6.868 -2.002 -5.081 -0.267 -0.409 -0.697 0.847 D 129 125 6 130 6 0 0 101 201 -9.920 -2.875 -4.416 -5.098 -2.669 -0.668 IL 130 130 5 130 6 1 1 108 207 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 108 207 -2.159 -0.392 -8.791 -6.959 -8.064 0.000 0.000 0.000 0.000 [ MATP 33 ] 26 98 c g - - MP 132 131 6 136 6 2 2 106 205 -11.766 -11.705 -0.121 -8.547 -6.999 -3.846 -1.552 -2.300 -3.388 0.343 0.191 -2.754 2.080 -2.097 -3.006 1.827 -2.875 -1.021 1.746 -3.024 -1.310 -2.660 ML 133 131 6 136 6 1 1 105 204 -7.427 -7.773 -0.598 -1.758 -7.623 -5.153 0.064 0.152 -0.574 0.229 MR 134 131 6 136 6 1 1 105 204 -7.401 -6.130 -1.459 -6.108 -0.859 -4.322 -0.076 0.491 -0.779 0.088 D 135 131 6 136 6 0 0 90 190 -11.314 -10.012 -5.809 -6.492 -6.509 -0.061 IL 136 136 5 136 6 1 1 106 205 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 106 205 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 27 97 g c - - MP 138 137 6 142 6 2 2 105 204 -11.672 -11.611 -0.158 -7.018 -4.518 -4.265 -1.933 -2.571 -2.489 1.239 -2.597 -0.592 2.003 -3.172 -3.379 2.118 -3.313 -0.539 0.911 -3.452 -0.937 -1.460 ML 139 137 6 142 6 1 1 104 203 -6.668 -7.014 -0.854 -1.423 -6.864 -4.393 -0.039 0.435 -0.738 0.105 MR 140 137 6 142 6 1 1 104 203 -7.753 -6.482 -0.731 -6.460 -1.594 -4.674 0.435 -0.188 -0.701 0.208 D 141 137 6 142 6 0 0 87 186 -12.657 -11.355 -7.152 -7.834 -7.852 -0.024 IL 142 142 5 142 6 1 1 104 203 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 104 203 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 28 96 g c - - MP 144 143 6 148 6 2 2 103 202 -11.540 -11.479 -0.614 -4.729 -6.151 -1.765 -3.012 -1.445 -3.210 0.843 -2.869 -3.313 1.793 -1.768 -2.562 2.189 -1.850 -0.244 1.379 -3.351 -0.759 -1.096 ML 145 143 6 148 6 1 1 103 202 -6.880 -7.227 -0.989 -1.209 -7.076 -4.606 0.255 -0.100 -0.666 0.315 MR 146 143 6 148 6 1 1 103 202 -8.966 -7.695 -3.102 -7.673 -0.226 -5.887 -1.370 -1.118 -2.109 1.546 D 147 143 6 148 6 0 0 84 183 -13.166 -11.864 -7.661 -8.343 -8.361 -0.017 IL 148 148 5 148 6 1 1 104 203 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 104 203 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 29 95 c g - - MP 150 149 6 154 4 2 2 103 202 -0.358 -5.365 -2.374 -8.526 -1.883 -2.369 -2.776 1.359 -2.323 -2.527 1.743 -2.501 -2.843 1.663 -2.866 -1.118 1.409 -2.917 0.995 -2.044 ML 151 149 6 154 4 1 1 101 200 -0.604 -3.958 -2.139 -4.303 -0.103 -0.522 0.120 0.363 MR 152 149 6 154 4 1 1 102 201 -0.351 -6.216 -3.487 -3.144 1.254 -0.509 -1.447 -0.874 D 153 149 6 154 4 0 0 82 181 -7.362 -2.802 -0.262 -5.891 IL 154 154 5 154 4 1 1 102 201 -0.309 -2.395 -8.538 -12.275 0.000 0.000 0.000 0.000 IR 155 155 6 155 3 1 1 91 190 -0.269 -2.559 -10.956 0.000 0.000 0.000 0.000 [ MATL 37 ] 54 - c - - - ML 156 155 6 158 3 1 1 15 33 -11.849 -0.001 -10.503 -0.064 0.359 0.145 -0.610 D 157 155 6 158 3 0 0 16 35 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 55 - u - - - ML 159 158 3 161 3 1 1 13 32 -11.849 -0.001 -10.503 -0.255 0.318 -0.960 0.487 D 160 158 3 161 3 0 0 15 34 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 56 - a - - - ML 162 161 3 164 3 1 1 12 30 -11.849 -0.229 -2.768 0.345 -0.200 -0.534 0.225 D 163 161 3 164 3 0 0 14 33 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 57 - a - - - ML 165 164 3 167 3 1 1 11 29 -11.621 -0.589 -1.578 0.535 -0.087 -0.344 -0.283 D 166 164 3 167 3 0 0 10 29 -10.564 -6.077 -0.023 IL 167 167 3 167 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 58 - u - - - ML 168 167 3 170 2 1 1 1 1 * 0.000 0.074 -0.093 -0.814 0.528 D 169 167 3 170 2 0 0 0 0 * 0.000 IL 170 170 3 170 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 171 170 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Xanthine ACC RF03054 DESC Xanthine riboswitch aptamer (NMT1 RNA) LENG 56 MAXL 151 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 14:29:56 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/14.9/3Dfams/RF03054/CM NSEQ 383 EFFN 383.000000 CKSUM 763090255 STATS LOCAL MSV -7.6139 0.72144 STATS LOCAL VITERBI -8.5097 0.72144 STATS LOCAL FORWARD -3.8795 0.72144 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.41231 1.47727 1.19867 1.48473 1.38629 1.38629 1.38629 1.38629 0.00052 8.25428 8.25428 1.46634 0.26236 0.00000 * 1 1.25998 1.46014 1.68570 1.20791 1 u - - : 1.38629 1.38629 1.38629 1.38629 0.00052 8.25428 8.25428 1.46634 0.26236 1.09861 0.40547 2 1.57505 1.50666 0.96736 1.65408 2 g - - : 1.38629 1.38629 1.38629 1.38629 0.00052 8.25428 8.25428 1.46634 0.26236 1.09861 0.40547 3 1.49696 0.93247 2.08485 1.35369 3 c - - : 1.38629 1.38629 1.38629 1.38629 0.00052 8.25428 8.25428 1.46634 0.26236 1.09861 0.40547 4 1.37681 1.25836 1.19528 1.82711 4 g - - : 1.38629 1.38629 1.38629 1.38629 0.00052 8.25428 8.25428 1.46634 0.26236 1.09861 0.40547 5 1.11242 1.85131 2.03867 0.95710 5 u - - < 1.38629 1.38629 1.38629 1.38629 0.00052 8.25428 8.25428 1.46634 0.26236 1.09861 0.40547 6 7.05907 3.19712 0.04295 8.10000 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 7 0.02593 8.15882 3.69363 7.74536 7 A - - < 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 8 7.04010 8.12814 0.00146 8.15169 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 9 4.70242 4.54377 7.80245 0.02032 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 10 0.00265 8.13419 6.26044 7.72611 10 A - - < 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 11 4.75107 8.28862 0.12803 2.19570 11 G - - - 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 12 0.00069 8.73700 8.20783 8.27757 12 A - - - 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 13 0.01095 8.61839 8.18708 4.56284 13 A - - - 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 14 7.73575 8.96120 0.00082 8.25967 14 G - - - 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 15 8.90134 0.00057 9.37874 7.94978 15 C - - - 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 16 2.78355 4.24101 0.14665 2.81028 16 G - - - 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 17 8.42822 8.65648 0.46485 0.99053 17 G - - - 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 18 7.96569 3.11603 4.31465 0.05980 18 U - - < 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 19 7.92158 0.12722 7.85203 2.13110 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 20 0.08351 4.68275 3.81687 3.01863 20 A - - - 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 21 2.34319 2.81235 0.17201 6.24194 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.00300 8.25635 5.90176 1.46634 0.26236 1.09861 0.40547 22 2.87576 0.64387 2.21795 1.17267 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.06202 3.34236 3.69770 0.45641 1.00391 2.52843 0.08315 23 1.00206 1.60384 0.96897 2.95112 25 g - - < 1.38629 1.38629 1.38629 1.38629 0.03911 8.22904 3.26795 1.46634 0.26236 0.26124 1.47008 24 2.42231 0.92757 1.27552 1.44188 26 c - - < 1.38629 1.38629 1.38629 1.38629 0.08916 8.21276 2.46475 1.46634 0.26236 2.80013 0.06273 25 1.76213 1.09666 1.02918 1.98751 27 g - - < 1.38629 1.38629 1.38629 1.38629 0.11386 8.12691 2.23194 1.46634 0.26236 2.44237 0.09097 26 2.09185 1.37373 0.88469 1.55808 28 g - - < 1.38629 1.38629 1.38629 1.38629 0.40885 8.02684 1.09284 1.46634 0.26236 1.56444 0.23472 27 1.70801 1.43970 1.34007 1.13960 29 u - - < 1.38629 1.38629 1.38629 1.38629 1.84713 0.17214 7.69682 1.63746 0.21626 0.00121 6.71760 28 1.46469 1.08669 1.24504 1.94079 54 c - - _ 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 29 1.61952 1.12436 2.10399 1.03514 55 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 30 1.14202 1.50899 1.76771 1.24143 56 a - - _ 1.38629 1.38629 1.38629 1.38629 0.16349 8.25635 1.89337 1.46634 0.26236 1.09861 0.40547 31 0.99140 1.41662 1.61592 1.67289 57 a - - _ 1.38629 1.38629 1.38629 1.38629 0.18837 8.09347 1.76385 1.46634 0.26236 2.15180 0.12361 32 1.37177 1.41617 2.02338 0.99023 58 u - - _ 1.38629 1.38629 1.38629 1.38629 2.35894 0.35944 1.57305 1.81433 0.17787 1.47368 0.26017 33 1.43330 1.40434 1.06595 1.76286 95 g - - > 1.38629 1.38629 1.38629 1.38629 0.05961 7.80365 2.85664 1.46634 0.26236 0.45586 1.00485 34 1.82222 1.04886 1.36144 1.46230 96 c - - > 1.38629 1.38629 1.38629 1.38629 0.00588 8.07081 5.19439 1.46634 0.26236 1.06660 0.42186 35 2.09740 0.98855 1.20800 1.57836 97 c - - > 1.38629 1.38629 1.38629 1.38629 0.01686 8.13373 4.10892 1.46634 0.26236 0.42866 1.05378 36 1.11292 1.29966 1.19124 2.35456 98 a - - > 1.38629 1.38629 1.38629 1.38629 0.17178 1.93519 4.30991 0.26692 1.45130 0.07528 2.62399 37 3.08316 1.01539 1.63533 0.92373 102 u - - > 1.38629 1.38629 1.38629 1.38629 0.00305 8.24030 5.88571 1.46634 0.26236 0.03159 3.47063 38 1.37329 2.40911 0.55431 2.49657 103 G - - > 1.38629 1.38629 1.38629 1.38629 0.00052 8.25387 8.25387 1.46634 0.26236 0.17384 1.83528 39 6.48217 0.45146 2.85872 1.18931 104 C - - > 1.38629 1.38629 1.38629 1.38629 0.16295 1.91306 5.90172 0.00351 5.65295 1.09861 0.40547 40 2.41786 1.44845 0.47726 2.89181 106 G - - - 1.38629 1.38629 1.38629 1.38629 0.00052 8.25387 8.25387 1.46634 0.26236 0.17383 1.83531 41 7.73575 8.96120 0.00082 8.25967 107 G - - - 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 42 6.71009 7.99188 0.00201 7.69841 108 G - - > 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 43 0.48454 8.02187 1.93227 1.43183 109 A - - > 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 44 1.27295 0.32921 9.07119 7.84879 110 C - - - 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 45 0.01136 8.64952 4.52285 8.23884 111 A - - - 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 46 9.57890 8.65967 10.62061 0.00027 112 U - - - 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 47 7.84932 4.38422 7.88522 0.01333 113 U - - > 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 48 6.68366 7.92646 0.00210 7.62776 114 G - - > 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 49 8.13702 0.00185 8.03553 6.69864 115 C - - > 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 50 7.83899 4.05996 7.88250 0.01819 116 U - - > 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 51 8.04460 0.04341 3.19600 6.69837 117 C - - > 1.38629 1.38629 1.38629 1.38629 0.00052 8.25635 8.25635 1.46634 0.26236 1.09861 0.40547 52 1.07651 2.01683 2.28031 0.85828 118 u - - > 1.38629 1.38629 1.38629 1.38629 0.00052 8.25428 8.25428 1.46634 0.26236 1.09861 0.40547 53 1.53072 2.36210 1.23941 0.91668 119 u - - : 1.38629 1.38629 1.38629 1.38629 0.00052 8.25428 8.25428 1.46634 0.26236 1.09861 0.40547 54 1.59544 1.45235 0.96039 1.71248 120 g - - : 1.38629 1.38629 1.38629 1.38629 0.00052 8.25428 8.25428 1.46634 0.26236 1.09861 0.40547 55 0.72862 1.59840 1.90210 1.79605 121 a - - : 1.38629 1.38629 1.38629 1.38629 0.00052 8.25428 8.25428 1.46634 0.26236 1.09861 0.40547 56 0.81521 1.99463 1.12820 2.32509 122 a - - : 1.38629 1.38629 1.38629 1.38629 0.00026 8.25402 * 1.46634 0.26236 0.00000 * //