INFERNAL1/a [1.1.5 | Sep 2023] NAME RAGATH-25 ACC RF03050 DESC RAGATH-25 RNA STATES 159 NODES 47 CLEN 50 W 71 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 4 20:12:45 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03050/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 21 EFFN 10.241089 CKSUM 2039253754 NULL 0.000 0.000 0.000 0.000 GA 49.00 TC 49.20 NC 37.30 EFP7GF -15.5969 0.72042 ECMLC 0.74258 -8.18929 0.74183 1600000 910824 0.001317 ECMGC 0.40833 -20.46437 -5.15870 1600000 207171 0.001931 ECMLI 0.67617 -7.04284 2.08326 1600000 574299 0.002090 ECMGI 0.44571 -16.00159 -2.81209 1600000 142944 0.002798 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 71 95 -8.697 -8.904 -0.016 -7.318 IL 1 1 2 1 4 1 15 74 98 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 15 73 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - c - - - ML 3 2 3 5 3 1 14 71 95 -9.639 -0.006 -8.293 -1.706 0.981 -1.334 0.403 D 4 2 3 5 3 0 11 69 93 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 14 72 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - u - - - ML 6 5 3 8 3 1 13 70 94 -9.639 -0.006 -8.293 0.277 -1.188 -0.915 0.863 D 7 5 3 8 3 0 10 68 92 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 13 71 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - C - - - ML 9 8 3 11 3 1 12 69 93 -9.639 -0.006 -8.293 -3.513 1.757 -4.381 -1.046 D 10 8 3 11 3 0 9 67 91 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 12 70 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 1 11 68 92 -9.639 -0.006 -8.293 1.967 -5.340 -4.776 -5.032 D 13 11 3 14 3 0 9 66 90 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 11 69 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 10 67 91 -9.639 -0.252 -2.650 1.967 -5.340 -4.776 -5.032 D 16 14 3 17 3 0 8 65 89 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 11 68 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - a - - - ML 18 17 3 20 3 1 10 66 90 -9.394 -0.008 -8.048 0.536 -0.669 -0.807 0.432 D 19 17 3 20 3 0 8 64 88 -8.661 -4.174 -0.086 IL 20 20 3 20 3 1 10 67 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - A - - - ML 21 20 3 23 3 1 9 65 89 -1.303 -0.759 -8.041 1.796 -3.607 -1.511 -3.391 D 22 20 3 23 3 0 7 63 87 -7.548 -0.160 -3.331 IL 23 23 3 23 3 1 9 64 89 -4.065 -0.108 -6.304 0.000 0.000 0.000 0.000 [ MATR 8 ] - 55 - A - - MR 24 23 3 26 2 1 8 63 87 -10.217 -0.001 1.967 -5.340 -4.776 -5.032 D 25 23 3 26 2 0 7 63 87 -4.432 -0.068 IR 26 26 3 26 2 1 8 64 88 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 9 ] - - - - - - B 27 26 3 28 72 0 7 62 86 [ BEGL 10 ] - - - - - - S 28 27 1 29 4 0 0 26 44 -0.020 -7.966 -7.373 -8.013 [ MATP 11 ] 9 23 C G - - MP 29 28 1 33 6 2 2 26 44 -10.034 -9.973 -0.011 -8.750 -9.030 -9.425 -5.385 -5.315 -5.163 -1.345 -0.511 -5.669 3.256 -4.636 -5.143 -1.171 -5.496 -3.154 1.527 -5.472 0.712 -3.938 ML 30 28 1 33 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 31 28 1 33 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 32 28 1 33 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 33 33 5 33 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 34 34 6 34 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 10 22 c g - - MP 35 34 6 39 6 2 2 24 42 -10.034 -9.973 -0.011 -8.750 -9.030 -9.425 -3.879 -3.633 -3.948 1.922 -3.326 -4.778 2.537 -3.844 -3.931 1.163 -4.448 -0.447 1.126 -4.088 -0.947 -2.805 ML 36 34 6 39 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 37 34 6 39 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 38 34 6 39 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 39 39 5 39 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 40 40 6 40 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 11 21 G C - - MP 41 40 6 45 6 2 2 22 40 -10.034 -9.973 -0.011 -8.750 -9.030 -9.425 -6.565 -4.311 -6.902 0.454 -7.947 -5.835 -2.855 -7.217 -5.679 3.801 -5.962 -2.055 -3.130 -5.905 -4.989 -5.743 ML 42 40 6 45 6 1 1 21 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 43 40 6 45 6 1 1 20 38 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 44 40 6 45 6 0 0 18 36 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 45 45 5 45 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 46 46 6 46 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 12 20 g c - - MP 47 46 6 51 6 2 2 20 38 -10.034 -9.973 -0.011 -8.750 -9.030 -9.425 -4.296 -3.091 -4.158 1.640 -4.774 -4.789 1.009 -4.664 -4.499 2.995 -4.801 -0.747 0.553 -4.062 -2.052 -3.101 ML 48 46 6 51 6 1 1 19 37 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 49 46 6 51 6 1 1 19 37 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 50 46 6 51 6 0 0 17 35 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 51 51 5 51 6 1 1 20 38 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 52 52 6 52 5 1 1 19 37 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 13 19 A U - - MP 53 52 6 57 4 2 2 18 36 -8.697 -3.671 -0.197 -4.416 -5.813 -5.151 -5.588 3.241 -4.582 -6.314 2.347 -5.144 -5.486 -1.477 -5.860 -2.683 -1.054 -6.193 -2.241 -4.371 ML 54 52 6 57 4 1 1 18 36 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 55 52 6 57 4 1 1 18 35 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 56 52 6 57 4 0 0 17 34 -4.568 -4.250 -2.265 -0.520 IL 57 57 5 57 4 1 1 20 37 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 58 58 6 58 3 1 1 17 35 -2.077 -0.461 -4.777 0.000 0.000 0.000 0.000 [ MATL 16 ] 14 - G - - - ML 59 58 6 61 3 1 1 15 33 -9.580 -0.007 -8.234 -4.241 -5.774 1.962 -4.974 D 60 58 6 61 3 0 0 15 33 -7.292 -0.551 -1.684 IL 61 61 3 61 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 15 - U - - - ML 62 61 3 64 3 1 1 14 32 -9.639 -0.006 -8.293 -2.142 -0.977 -1.459 1.537 D 63 61 3 64 3 0 0 15 33 -6.174 -1.687 -0.566 IL 64 64 3 64 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 16 - U - - - ML 65 64 3 67 3 1 1 12 30 -9.639 -0.006 -8.293 -4.373 -3.985 -5.179 1.949 D 66 64 3 67 3 0 0 13 32 -6.174 -1.687 -0.566 IL 67 67 3 67 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 17 - C - - - ML 68 67 3 70 2 1 1 1 1 * 0.000 -4.893 1.956 -5.435 -3.978 D 69 67 3 70 2 0 0 0 0 * 0.000 IL 70 70 3 70 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 20 ] - - - - - - E 71 70 3 -1 0 0 0 0 0 [ BEGR 21 ] - - - - - - S 72 27 1 73 3 0 0 48 72 -1.678 -1.722 -1.379 IL 73 73 2 73 3 1 1 50 74 -1.103 -0.932 -6.601 0.000 0.000 0.000 0.000 [ MATL 22 ] 27 - a - - - ML 74 73 2 76 3 1 1 41 60 -8.946 -0.010 -7.600 0.664 -0.784 -0.214 -0.040 D 75 73 2 76 3 0 0 40 59 -9.789 -0.925 -1.082 IL 76 76 3 76 3 1 1 44 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 28 - a - - - ML 77 76 3 79 3 1 1 40 59 -9.364 -0.008 -8.018 0.938 -0.080 -0.544 -1.145 D 78 76 3 79 3 0 0 38 57 -8.785 -4.298 -0.079 IL 79 79 3 79 3 1 1 43 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 29 - A - - - ML 80 79 3 82 3 1 1 39 58 -9.364 -0.008 -8.018 1.008 -0.235 -1.834 -0.220 D 81 79 3 82 3 0 0 38 57 -8.785 -1.288 -0.766 IL 82 82 3 82 3 1 1 42 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 30 - A - - - ML 83 82 3 85 3 1 1 38 57 -9.488 -0.007 -8.142 1.368 -0.478 -2.330 -0.996 D 84 82 3 85 3 0 0 37 55 -8.144 -3.657 -0.125 IL 85 85 3 85 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 31 - A - - - ML 86 85 3 88 3 1 1 37 56 -9.488 -0.007 -8.142 1.370 -1.389 -2.215 -0.290 D 87 85 3 88 3 0 0 36 55 -8.144 -0.279 -2.536 IL 88 88 3 88 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 32 - A - - - ML 89 88 3 91 3 1 1 36 55 -9.639 -0.006 -8.293 1.701 -3.719 -0.774 -3.507 D 90 88 3 91 3 0 0 35 54 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 33 - A - - - ML 92 91 3 94 3 1 1 35 54 -9.639 -0.006 -8.293 1.714 -3.730 -0.842 -3.522 D 93 91 3 94 3 0 0 34 53 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 34 - G - - - ML 95 94 3 97 3 1 1 34 53 -9.639 -0.006 -8.293 -1.365 -4.243 1.800 -3.725 D 96 94 3 97 3 0 0 33 52 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 35 - a - - - ML 98 97 3 100 3 1 1 33 52 -9.639 -0.006 -8.293 0.587 -0.219 -1.835 0.442 D 99 97 3 100 3 0 0 32 51 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 36 - A - - - ML 101 100 3 103 3 1 1 32 51 -9.639 -0.006 -8.293 1.967 -5.340 -4.776 -5.032 D 102 100 3 103 3 0 0 31 50 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 37 - A - - - ML 104 103 3 106 3 1 1 31 49 -9.639 -0.006 -8.293 1.194 -0.840 -1.122 -0.528 D 105 103 3 106 3 0 0 30 49 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 38 - G - - - ML 107 106 3 109 3 1 1 30 48 -9.639 -0.006 -8.293 0.221 -3.527 1.395 -3.090 D 108 106 3 109 3 0 0 29 48 -6.174 -1.687 -0.566 IL 109 109 3 109 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 39 - U - - - ML 110 109 3 112 3 1 1 29 47 -9.639 -0.006 -8.293 -4.373 -3.985 -5.179 1.949 D 111 109 3 112 3 0 0 28 47 -6.174 -1.687 -0.566 IL 112 112 3 112 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 40 - C - - - ML 113 112 3 115 5 1 1 28 46 -8.636 -0.013 -8.451 -8.663 -9.555 -4.893 1.956 -5.435 -3.978 D 114 112 3 115 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 115 115 3 115 5 1 1 28 47 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 41 54 c g - - MP 116 115 3 120 6 2 2 27 45 -10.034 -9.973 -0.011 -8.750 -9.030 -9.425 -3.817 -3.344 -3.854 1.734 -3.530 -4.632 2.104 -3.936 -3.933 2.030 -4.408 -0.383 1.211 -3.927 -1.150 -2.777 ML 117 115 3 120 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 118 115 3 120 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 119 115 3 120 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 120 120 5 120 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 121 121 6 121 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 42 53 C G - - MP 122 121 6 126 6 2 2 25 43 -10.034 -9.973 -0.011 -8.750 -9.030 -9.425 -6.085 -6.138 -5.614 -2.201 -4.091 -5.909 3.217 -4.949 -5.654 -2.069 -5.877 -4.122 2.494 -6.039 -1.749 -4.438 ML 123 121 6 126 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 124 121 6 126 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 125 121 6 126 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 126 126 5 126 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 127 127 6 127 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 43 52 C G - - MP 128 127 6 132 6 2 2 23 41 -10.034 -9.973 -0.011 -8.750 -9.030 -9.425 -7.989 -8.165 -6.947 -4.419 -5.290 -6.910 3.957 -6.657 -7.462 -4.397 -6.950 -6.414 -2.466 -7.882 -3.457 -6.266 ML 129 127 6 132 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 130 127 6 132 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 131 127 6 132 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 132 132 5 132 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 133 133 6 133 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 44 51 C G - - MP 134 133 6 138 4 2 2 20 39 -8.697 -8.904 -0.016 -7.318 -7.989 -8.165 -6.947 -4.419 -5.290 -6.910 3.957 -6.657 -7.462 -4.397 -6.950 -6.414 -2.466 -7.882 -3.457 -6.266 ML 135 133 6 138 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 136 133 6 138 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 137 133 6 138 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 138 138 5 138 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 139 139 6 139 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 45 - G - - - ML 140 139 6 142 3 1 1 18 36 -9.639 -0.006 -8.293 -0.518 -2.464 1.305 -0.623 D 141 139 6 142 3 0 0 18 36 -6.174 -1.687 -0.566 IL 142 142 3 142 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 46 - g - - - ML 143 142 3 145 3 1 1 16 35 -9.639 -0.006 -8.293 -0.814 -1.990 0.793 0.532 D 144 142 3 145 3 0 0 17 35 -6.174 -1.687 -0.566 IL 145 145 3 145 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 47 - u - - - ML 146 145 3 148 3 1 1 15 33 -9.639 -0.006 -8.293 0.035 -1.639 -0.286 0.875 D 147 145 3 148 3 0 0 16 34 -6.174 -1.687 -0.566 IL 148 148 3 148 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 48 - U - - - ML 149 148 3 151 3 1 1 14 32 -9.639 -0.006 -8.293 -4.373 -3.985 -5.179 1.949 D 150 148 3 151 3 0 0 15 33 -6.174 -1.687 -0.566 IL 151 151 3 151 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 49 - C - - - ML 152 151 3 154 3 1 1 12 30 -9.639 -0.006 -8.293 -4.893 1.956 -5.435 -3.978 D 153 151 3 154 3 0 0 13 32 -6.174 -1.687 -0.566 IL 154 154 3 154 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 50 - A - - - ML 155 154 3 157 2 1 1 1 1 * 0.000 1.967 -5.340 -4.776 -5.032 D 156 154 3 157 2 0 0 0 0 * 0.000 IL 157 157 3 157 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 46 ] - - - - - - E 158 157 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME RAGATH-25 ACC RF03050 DESC RAGATH-25 RNA LENG 50 MAXL 112 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 4 20:12:45 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03050/CM NSEQ 21 EFFN 17.957153 CKSUM 2039253754 STATS LOCAL MSV -7.4911 0.72042 STATS LOCAL VITERBI -7.9209 0.72042 STATS LOCAL FORWARD -3.5819 0.72042 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.19587 1.38186 1.42373 1.58166 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 0.00000 * 1 3.07570 0.63846 2.36031 1.10459 1 C - - : 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 2 1.18464 2.38900 2.09101 0.73634 2 u - - : 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 3 4.45669 0.14177 5.00682 2.17255 3 C - - : 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 4 0.01217 5.76425 5.33845 5.48310 4 A - - : 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 5 0.01217 5.76425 5.33845 5.48310 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.19313 5.44674 1.76424 1.46634 0.26236 1.09861 0.40547 6 0.98026 1.91580 2.01341 1.06703 6 a - - : 1.38629 1.38629 1.38629 1.38629 0.01040 5.26401 5.26401 1.46634 0.26236 3.73159 0.02425 7 0.11534 4.45191 2.47242 4.35072 7 A - - : 1.38629 1.38629 1.38629 1.38629 0.61558 0.78856 5.26401 0.02262 3.80035 0.04910 3.03844 8 4.35195 0.36976 4.14692 1.27151 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 9 1.29655 0.91061 1.74886 1.89528 10 c - - < 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 10 2.42002 5.15557 0.10639 5.07640 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 11 1.55258 2.04819 0.59310 2.23758 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 12 0.45486 1.13470 4.01478 3.65350 13 A - - < 1.38629 1.38629 1.38629 1.38629 0.05241 5.44674 3.06290 1.46634 0.26236 1.09861 0.40547 13 4.86045 6.00478 0.01496 5.37369 14 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00904 5.40337 5.40337 1.46634 0.26236 0.16923 1.85992 14 3.46424 2.12493 2.42663 0.27322 15 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 15 5.18175 4.84645 5.76623 0.01675 16 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 16 5.32374 0.01761 5.64637 4.70534 17 C - - _ 1.38629 1.38629 1.38629 1.38629 0.09270 2.47428 5.44674 0.09939 2.35801 1.09861 0.40547 17 3.93689 4.33228 1.11662 0.44633 19 U - - > 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 18 2.35897 0.63332 1.97672 1.44337 20 C - - > 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 19 5.15482 0.11463 5.01789 2.34428 21 C - - > 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 20 2.04956 2.03274 0.86491 1.14211 22 g - - > 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 21 1.50296 4.28908 0.29180 4.08079 23 G - - > 1.38629 1.38629 1.38629 1.38629 1.38407 1.08675 0.88641 0.67692 0.70964 1.09861 0.40547 22 0.87988 2.00885 1.51726 1.46225 27 a - - - 1.38629 1.38629 1.38629 1.38629 0.01466 4.92279 4.92279 1.46634 0.26236 0.61745 0.77504 23 0.66726 1.38108 1.78631 2.68820 28 A - - - 1.38629 1.38629 1.38629 1.38629 0.01064 5.24191 5.24191 1.46634 0.26236 3.82798 0.02199 24 0.61737 1.52988 3.06255 1.62297 29 A - - - 1.38629 1.38629 1.38629 1.38629 0.01064 5.24191 5.24191 1.46634 0.26236 0.86118 0.54933 25 0.37557 1.70061 3.53552 2.28885 30 A - - - 1.38629 1.38629 1.38629 1.38629 0.00969 5.33494 5.33494 1.46634 0.26236 3.31564 0.03699 26 0.36892 2.53115 3.42845 1.62703 31 A - - - 1.38629 1.38629 1.38629 1.38629 0.00969 5.33494 5.33494 1.46634 0.26236 0.07539 2.62249 27 0.18596 4.57835 1.90921 4.48957 32 A - - - 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 28 0.17730 4.57981 1.95891 4.49125 33 A - - - 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 29 2.36830 4.94079 0.11796 4.55798 34 G - - - 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 30 0.93835 1.53251 3.03705 1.06492 35 a - - - 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 31 0.01217 5.76425 5.33845 5.48310 36 A - - - 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 32 0.49877 2.01711 2.25904 1.86282 37 A - - - 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 33 1.21321 4.42971 0.39274 4.15809 38 G - - - 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 34 5.18175 4.84645 5.76623 0.01675 39 U - - - 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 35 5.32374 0.01761 5.64637 4.70534 40 C - - - 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 36 1.44718 1.23552 1.17427 1.80158 41 g - - < 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 37 4.77432 0.50377 4.64457 0.97366 42 C - - < 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 38 5.89447 0.01407 5.91364 4.76592 43 C - - < 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 39 5.86521 0.01428 5.89337 4.75819 44 C - - < 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 40 1.81740 3.56589 0.42850 1.84645 45 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 41 2.17550 3.24029 0.75316 0.97705 46 g - - _ 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 42 1.39342 2.88024 1.56528 0.72026 47 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 43 5.18175 4.84645 5.76623 0.01675 48 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 44 5.32374 0.01761 5.64637 4.70534 49 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 45 0.01217 5.76425 5.33845 5.48310 50 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 46 4.94118 6.02276 0.01264 5.81086 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 47 4.95049 6.03926 0.01248 5.82950 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 48 0.99827 4.78367 0.49058 4.52366 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 49 1.92554 1.32188 1.18050 1.27138 54 g - - > 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 50 0.01217 5.76425 5.33845 5.48310 55 A - - : 1.38629 1.38629 1.38629 1.38629 0.00434 5.44242 * 1.46634 0.26236 0.00000 * //