INFERNAL1/a [1.1.4 | Dec 2020] NAME RAGATH-25 ACC RF03050 DESC RAGATH-25 RNA STATES 159 NODES 47 CLEN 50 W 72 ALPH RNA RF no CONS yes MAP yes DATE Mon Oct 1 23:03:51 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmcalibrate --cpu 8 CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 21 EFFN 10.118042 CKSUM 2039253754 NULL 0.000 0.000 0.000 0.000 GA 49.00 TC 49.00 NC 36.40 EFP7GF -15.5643 0.72039 ECMLC 0.70300 -8.77095 0.66396 1600000 911464 0.001317 ECMGC 0.41232 -20.18659 -5.10467 1600000 200783 0.001992 ECMLI 0.67556 -7.06664 2.07379 1600000 576644 0.002081 ECMGI 0.44191 -16.12515 -2.80249 1600000 144180 0.002774 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 72 98 -8.682 -8.889 -0.016 -7.303 IL 1 1 2 1 4 1 15 75 101 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 15 74 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - c - - - ML 3 2 3 5 3 1 14 72 98 -9.624 -0.006 -8.278 -1.680 0.929 -1.357 0.479 D 4 2 3 5 3 0 11 70 96 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 14 73 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - u - - - ML 6 5 3 8 3 1 13 71 97 -9.624 -0.006 -8.278 0.367 -1.200 -0.926 0.806 D 7 5 3 8 3 0 10 69 95 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 13 72 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - C - - - ML 9 8 3 11 3 1 12 70 96 -9.624 -0.006 -8.278 -3.520 1.762 -4.382 -1.082 D 10 8 3 11 3 0 9 68 94 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 12 71 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 1 11 69 95 -9.624 -0.006 -8.278 1.966 -5.318 -4.755 -5.012 D 13 11 3 14 3 0 9 67 93 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 11 70 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 10 68 94 -9.624 -0.248 -2.672 1.966 -5.318 -4.755 -5.012 D 16 14 3 17 3 0 8 66 92 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 11 70 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - a - - - ML 18 17 3 20 3 1 10 67 93 -9.383 -0.008 -8.037 0.599 -0.695 -0.845 0.390 D 19 17 3 20 3 0 8 65 91 -8.631 -4.144 -0.088 IL 20 20 3 20 3 1 10 69 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - A - - - ML 21 20 3 23 3 1 9 66 92 -1.367 -0.717 -8.031 1.794 -3.593 -1.506 -3.375 D 22 20 3 23 3 0 7 65 91 -7.520 -0.163 -3.303 IL 23 23 3 23 3 1 9 66 92 -4.008 -0.113 -6.246 0.000 0.000 0.000 0.000 [ MATR 8 ] - 55 - A - - MR 24 23 3 26 2 1 8 65 91 -10.202 -0.001 1.966 -5.318 -4.755 -5.012 D 25 23 3 26 2 0 7 64 90 -4.432 -0.068 IR 26 26 3 26 2 1 8 66 91 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 9 ] - - - - - - B 27 26 3 28 72 0 7 64 90 [ BEGL 10 ] - - - - - - S 28 27 1 29 4 0 0 26 44 -0.020 -7.954 -7.362 -8.002 [ MATP 11 ] 9 23 C G - - MP 29 28 1 33 6 2 2 26 44 -10.024 -9.963 -0.011 -8.740 -9.019 -9.414 -5.395 -5.326 -5.166 -1.355 -0.583 -5.666 3.284 -4.633 -5.147 -1.182 -5.497 -3.166 1.488 -5.478 0.649 -3.941 ML 30 28 1 33 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 31 28 1 33 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 32 28 1 33 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 33 33 5 33 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 34 34 6 34 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 10 22 c g - - MP 35 34 6 39 6 2 2 24 42 -10.024 -9.963 -0.011 -8.740 -9.019 -9.414 -3.856 -3.609 -3.925 1.993 -3.318 -4.756 2.495 -3.832 -3.912 1.154 -4.429 -0.490 1.126 -4.065 -0.944 -2.789 ML 36 34 6 39 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 37 34 6 39 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 38 34 6 39 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 39 39 5 39 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 40 40 6 40 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 11 21 G C - - MP 41 40 6 45 6 2 2 22 40 -10.024 -9.963 -0.011 -8.740 -9.019 -9.414 -6.573 -4.307 -6.920 0.409 -7.956 -5.824 -2.860 -7.231 -5.675 3.805 -5.956 -2.054 -3.136 -5.902 -4.997 -5.760 ML 42 40 6 45 6 1 1 20 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 43 40 6 45 6 1 1 20 38 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 44 40 6 45 6 0 0 18 36 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 45 45 5 45 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 46 46 6 46 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 12 20 g c - - MP 47 46 6 51 6 2 2 20 38 -10.024 -9.963 -0.011 -8.740 -9.019 -9.414 -4.270 -3.113 -4.144 1.606 -4.638 -4.786 1.228 -4.601 -4.462 2.944 -4.778 -0.774 0.559 -4.061 -1.955 -3.080 ML 48 46 6 51 6 1 1 19 37 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 49 46 6 51 6 1 1 19 37 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 50 46 6 51 6 0 0 17 35 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 51 51 5 51 6 1 1 20 38 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 52 52 6 52 5 1 1 19 37 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 13 19 A U - - MP 53 52 6 57 4 2 2 18 36 -8.682 -3.268 -0.235 -4.499 -5.779 -5.151 -5.552 3.183 -4.524 -6.258 2.437 -5.103 -5.458 -1.454 -5.828 -2.697 -0.985 -6.136 -2.182 -4.337 ML 54 52 6 57 4 1 1 18 36 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 55 52 6 57 4 1 1 18 35 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 56 52 6 57 4 0 0 17 34 -4.568 -4.250 -2.265 -0.520 IL 57 57 5 57 4 1 1 19 37 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 58 58 6 58 3 1 1 17 35 -2.232 -0.407 -4.932 0.000 0.000 0.000 0.000 [ MATL 16 ] 14 - G - - - ML 59 58 6 61 3 1 1 15 34 -9.569 -0.007 -8.223 -4.229 -5.759 1.962 -4.961 D 60 58 6 61 3 0 0 15 34 -7.232 -0.580 -1.623 IL 61 61 3 61 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 15 - U - - - ML 62 61 3 64 3 1 1 14 32 -9.624 -0.006 -8.278 -2.172 -1.044 -1.509 1.557 D 63 61 3 64 3 0 0 15 33 -6.174 -1.687 -0.566 IL 64 64 3 64 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 16 - U - - - ML 65 64 3 67 3 1 1 12 30 -9.624 -0.006 -8.278 -4.351 -3.965 -5.156 1.948 D 66 64 3 67 3 0 0 13 32 -6.174 -1.687 -0.566 IL 67 67 3 67 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 17 - C - - - ML 68 67 3 70 2 1 1 1 1 * 0.000 -4.876 1.955 -5.419 -3.960 D 69 67 3 70 2 0 0 0 0 * 0.000 IL 70 70 3 70 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 20 ] - - - - - - E 71 70 3 -1 0 0 0 0 0 [ BEGR 21 ] - - - - - - S 72 27 1 73 3 0 0 50 75 -1.567 -1.764 -1.442 IL 73 73 2 73 3 1 1 51 77 -1.031 -0.996 -6.743 0.000 0.000 0.000 0.000 [ MATL 22 ] 27 - a - - - ML 74 73 2 76 3 1 1 41 60 -8.969 -0.010 -7.623 0.608 -0.840 -0.037 -0.085 D 75 73 2 76 3 0 0 40 59 -9.717 -0.924 -1.084 IL 76 76 3 76 3 1 1 44 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 28 - a - - - ML 77 76 3 79 3 1 1 40 59 -9.363 -0.008 -8.018 0.880 -0.144 -0.334 -1.117 D 78 76 3 79 3 0 0 38 57 -8.716 -4.229 -0.083 IL 79 79 3 79 3 1 1 43 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 29 - a - - - ML 80 79 3 82 3 1 1 39 58 -9.363 -0.008 -8.018 0.926 -0.084 -1.814 -0.198 D 81 79 3 82 3 0 0 38 57 -8.716 -1.318 -0.745 IL 82 82 3 82 3 1 1 42 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 30 - A - - - ML 83 82 3 85 3 1 1 38 57 -9.479 -0.007 -8.133 1.391 -0.546 -2.343 -1.012 D 84 82 3 85 3 0 0 37 56 -8.100 -3.613 -0.129 IL 85 85 3 85 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 31 - A - - - ML 86 85 3 88 3 1 1 37 56 -9.479 -0.007 -8.133 1.404 -1.450 -2.260 -0.361 D 87 85 3 88 3 0 0 36 55 -8.100 -0.289 -2.491 IL 88 88 3 88 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 32 - A - - - ML 89 88 3 91 3 1 1 36 55 -9.624 -0.006 -8.278 1.712 -3.710 -0.839 -3.500 D 90 88 3 91 3 0 0 35 54 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 33 - A - - - ML 92 91 3 94 3 1 1 35 54 -9.624 -0.006 -8.278 1.712 -3.710 -0.837 -3.500 D 93 91 3 94 3 0 0 34 53 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 34 - G - - - ML 95 94 3 97 3 1 1 34 53 -9.624 -0.006 -8.278 -1.444 -4.278 1.810 -3.755 D 96 94 3 97 3 0 0 33 52 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 35 - a - - - ML 98 97 3 100 3 1 1 33 52 -9.624 -0.006 -8.278 0.526 -0.234 -1.826 0.514 D 99 97 3 100 3 0 0 32 51 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 36 - A - - - ML 101 100 3 103 3 1 1 32 51 -9.624 -0.006 -8.278 1.966 -5.318 -4.755 -5.012 D 102 100 3 103 3 0 0 31 50 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 37 - A - - - ML 104 103 3 106 3 1 1 31 49 -9.624 -0.006 -8.278 1.223 -0.866 -1.179 -0.565 D 105 103 3 106 3 0 0 30 49 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 38 - G - - - ML 107 106 3 109 3 1 1 30 48 -9.624 -0.006 -8.278 0.189 -3.513 1.408 -3.074 D 108 106 3 109 3 0 0 29 48 -6.174 -1.687 -0.566 IL 109 109 3 109 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 39 - U - - - ML 110 109 3 112 3 1 1 29 47 -9.624 -0.006 -8.278 -4.351 -3.965 -5.156 1.948 D 111 109 3 112 3 0 0 28 47 -6.174 -1.687 -0.566 IL 112 112 3 112 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 40 - C - - - ML 113 112 3 115 5 1 1 28 46 -8.622 -0.013 -8.437 -8.649 -9.541 -4.876 1.955 -5.419 -3.960 D 114 112 3 115 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 115 115 3 115 5 1 1 28 47 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 41 54 c g - - MP 116 115 3 120 6 2 2 27 45 -10.024 -9.963 -0.011 -8.740 -9.019 -9.414 -3.825 -3.378 -3.865 1.672 -3.491 -4.649 2.185 -3.917 -3.930 1.993 -4.411 -0.444 1.222 -3.946 -1.107 -2.776 ML 117 115 3 120 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 118 115 3 120 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 119 115 3 120 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 120 120 5 120 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 121 121 6 121 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 42 53 C G - - MP 122 121 6 126 6 2 2 25 43 -10.024 -9.963 -0.011 -8.740 -9.019 -9.414 -6.053 -6.100 -5.589 -2.160 -4.071 -5.890 3.152 -4.928 -5.627 -2.026 -5.854 -4.076 2.590 -6.011 -1.728 -4.412 ML 123 121 6 126 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 124 121 6 126 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 125 121 6 126 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 126 126 5 126 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 127 127 6 127 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 43 52 C G - - MP 128 127 6 132 6 2 2 23 41 -10.024 -9.963 -0.011 -8.740 -9.019 -9.414 -7.963 -8.138 -6.930 -4.391 -5.273 -6.896 3.956 -6.631 -7.436 -4.368 -6.936 -6.384 -2.440 -7.856 -3.432 -6.240 ML 129 127 6 132 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 130 127 6 132 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 131 127 6 132 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 132 132 5 132 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 133 133 6 133 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 44 51 C G - - MP 134 133 6 138 4 2 2 20 39 -8.682 -8.889 -0.016 -7.303 -7.963 -8.138 -6.930 -4.391 -5.273 -6.896 3.956 -6.631 -7.436 -4.368 -6.936 -6.384 -2.440 -7.856 -3.432 -6.240 ML 135 133 6 138 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 136 133 6 138 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 137 133 6 138 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 138 138 5 138 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 139 139 6 139 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 45 - G - - - ML 140 139 6 142 3 1 1 18 36 -9.624 -0.006 -8.278 -0.566 -2.494 1.334 -0.677 D 141 139 6 142 3 0 0 18 36 -6.174 -1.687 -0.566 IL 142 142 3 142 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 46 - g - - - ML 143 142 3 145 3 1 1 16 35 -9.624 -0.006 -8.278 -0.791 -1.940 0.714 0.605 D 144 142 3 145 3 0 0 17 35 -6.174 -1.687 -0.566 IL 145 145 3 145 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 47 - u - - - ML 146 145 3 148 3 1 1 15 33 -9.624 -0.006 -8.278 0.010 -1.637 -0.313 0.901 D 147 145 3 148 3 0 0 16 34 -6.174 -1.687 -0.566 IL 148 148 3 148 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 48 - U - - - ML 149 148 3 151 3 1 1 14 32 -9.624 -0.006 -8.278 -4.351 -3.965 -5.156 1.948 D 150 148 3 151 3 0 0 15 33 -6.174 -1.687 -0.566 IL 151 151 3 151 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 49 - C - - - ML 152 151 3 154 3 1 1 12 30 -9.624 -0.006 -8.278 -4.876 1.955 -5.419 -3.960 D 153 151 3 154 3 0 0 13 32 -6.174 -1.687 -0.566 IL 154 154 3 154 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 50 - A - - - ML 155 154 3 157 2 1 1 1 1 * 0.000 1.966 -5.318 -4.755 -5.012 D 156 154 3 157 2 0 0 0 0 * 0.000 IL 157 157 3 157 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 46 ] - - - - - - E 158 157 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME RAGATH-25 ACC RF03050 DESC RAGATH-25 RNA LENG 50 MAXL 112 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Oct 1 23:03:51 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED NSEQ 21 EFFN 17.993042 CKSUM 2039253754 STATS LOCAL MSV -7.3342 0.72039 STATS LOCAL VITERBI -7.9200 0.72039 STATS LOCAL FORWARD -3.5790 0.72039 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.19685 1.38384 1.42165 1.58024 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 0.00000 * 1 3.07016 0.67332 2.38646 1.04521 1 C - - : 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 2 1.11242 2.40898 2.10707 0.77710 2 u - - : 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 3 4.47607 0.13767 5.01885 2.20161 3 C - - : 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 4 0.01214 5.76658 5.34063 5.48515 4 A - - : 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 5 0.01214 5.76658 5.34063 5.48515 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.19037 5.44674 1.77766 1.46634 0.26236 1.09861 0.40547 6 0.92961 1.94020 2.04993 1.10000 6 a - - : 1.38629 1.38629 1.38629 1.38629 0.01037 5.26675 5.26675 1.46634 0.26236 3.71882 0.02456 7 0.11545 4.45640 2.46988 4.35546 7 A - - : 1.38629 1.38629 1.38629 1.38629 0.58151 0.83060 5.26675 0.02352 3.76177 0.04974 3.02567 8 4.37517 0.35308 4.17267 1.31126 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 9 1.23857 0.94039 1.77306 1.89770 10 c - - < 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 10 2.45355 5.16852 0.10295 5.09216 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 11 1.57725 1.87923 0.62501 2.24908 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 12 0.49088 1.06738 4.03676 3.63626 13 A - - < 1.38629 1.38629 1.38629 1.38629 0.04951 5.44674 3.12367 1.46634 0.26236 1.09861 0.40547 13 4.86515 6.01015 0.01489 5.37848 14 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00902 5.40624 5.40624 1.46634 0.26236 0.17894 1.80886 14 3.49508 2.17923 2.46245 0.25968 15 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 15 5.18466 4.84908 5.76927 0.01670 16 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 16 5.32566 0.01757 5.64819 4.70727 17 C - - _ 1.38629 1.38629 1.38629 1.38629 0.12237 2.19943 5.44674 0.07602 2.61451 1.09861 0.40547 17 3.92036 4.34890 1.05018 0.48228 19 U - - > 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 18 2.37584 0.66564 1.81629 1.46754 20 C - - > 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 19 5.16765 0.11108 5.03223 2.37610 21 C - - > 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 20 2.05125 2.05016 0.89363 1.09798 22 g - - > 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 21 1.54076 4.31365 0.27987 4.10344 23 G - - > 1.38629 1.38629 1.38629 1.38629 1.42738 1.00854 0.92808 0.72769 0.65976 1.09861 0.40547 22 0.92328 2.05910 1.37563 1.50266 27 a - - - 1.38629 1.38629 1.38629 1.38629 0.01426 4.95080 4.95080 1.46634 0.26236 0.61524 0.77764 23 0.70881 1.43042 1.61158 2.67383 28 a - - - 1.38629 1.38629 1.38629 1.38629 0.01053 5.25196 5.25196 1.46634 0.26236 3.78555 0.02296 24 0.67710 1.40721 3.05368 1.60993 29 A - - - 1.38629 1.38629 1.38629 1.38629 0.01053 5.25196 5.25196 1.46634 0.26236 0.88234 0.53412 25 0.35919 1.75345 3.55847 2.30160 30 A - - - 1.38629 1.38629 1.38629 1.38629 0.00965 5.33837 5.33837 1.46634 0.26236 3.28942 0.03799 26 0.34565 2.58638 3.48039 1.68120 31 A - - - 1.38629 1.38629 1.38629 1.38629 0.00965 5.33837 5.33837 1.46634 0.26236 0.07748 2.59627 27 0.17770 4.58188 1.95623 4.49342 32 A - - - 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 28 0.17789 4.58183 1.95513 4.49338 33 A - - - 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 29 2.42855 4.98369 0.11107 4.59429 34 G - - - 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 30 0.98436 1.54633 3.03741 1.00694 35 a - - - 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 31 0.01214 5.76658 5.34063 5.48515 36 A - - - 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 32 0.47734 2.03900 2.31060 1.89572 37 A - - - 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 33 1.23565 4.43139 0.38301 4.15737 38 G - - - 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 34 5.18466 4.84908 5.76927 0.01670 39 U - - - 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 35 5.32566 0.01757 5.64819 4.70727 40 C - - - 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 36 1.49446 1.17215 1.20292 1.79809 41 c - - < 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 37 4.77228 0.55033 4.64172 0.90352 42 C - - < 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 38 5.89683 0.01403 5.91612 4.76890 43 C - - < 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 39 5.86752 0.01424 5.89582 4.76115 44 C - - < 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 40 1.85512 3.59403 0.40917 1.88466 45 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 41 2.16397 3.20880 0.80523 0.92196 46 g - - _ 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 42 1.41498 2.88975 1.58570 0.69982 47 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 43 5.18466 4.84908 5.76927 0.01670 48 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 44 5.32566 0.01757 5.64819 4.70727 49 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 45 0.01214 5.76658 5.34063 5.48515 50 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 46 4.94381 6.02516 0.01261 5.81355 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 47 4.95314 6.04169 0.01245 5.83224 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 48 0.92644 4.78108 0.53652 4.52164 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 49 1.92442 1.34696 1.11919 1.31876 54 g - - > 1.38629 1.38629 1.38629 1.38629 0.00866 5.44674 5.44674 1.46634 0.26236 1.09861 0.40547 50 0.01214 5.76658 5.34063 5.48515 55 A - - : 1.38629 1.38629 1.38629 1.38629 0.00434 5.44242 * 1.46634 0.26236 0.00000 * //