INFERNAL1/a [1.1.5 | Sep 2023] NAME porB ACC RF03042 DESC porB RNA STATES 187 NODES 56 CLEN 61 W 77 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 4 20:38:47 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03042/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 85 EFFN 3.488922 CKSUM 4165252027 NULL 0.000 0.000 0.000 0.000 GA 35.10 TC 35.60 NC 34.90 EFP7GF -10.1647 0.71906 ECMLC 0.52196 -10.70758 1.47995 1600000 694828 0.001727 ECMGC 0.41065 -17.09153 -3.08692 1600000 125802 0.003180 ECMLI 0.50296 -8.61862 3.07309 1600000 429556 0.002794 ECMGI 0.42266 -12.48657 0.18768 1600000 84822 0.004716 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 77 96 -7.477 -7.684 -0.037 -6.098 IL 1 1 2 1 4 1 20 81 101 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 20 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - C - - - ML 3 2 3 5 3 1 20 77 96 -8.461 -0.015 -7.115 -2.941 1.835 -3.750 -2.131 D 4 2 3 5 3 0 14 76 95 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 19 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 1 20 76 95 -8.461 -0.015 -7.115 1.866 -3.370 -2.908 -3.014 D 7 5 3 8 3 0 13 74 94 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 18 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 19 75 94 -8.461 -0.015 -7.115 -0.187 -1.249 -1.672 1.255 D 10 8 3 11 3 0 13 73 93 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 17 77 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 12 11 3 14 3 1 18 74 93 -8.461 -0.015 -7.115 -1.190 0.223 -1.988 1.099 D 13 11 3 14 3 0 12 72 92 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 17 76 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - U - - - ML 15 14 3 17 3 1 18 73 92 -8.461 -0.015 -7.115 -2.432 -2.270 -3.199 1.807 D 16 14 3 17 3 0 11 71 91 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 16 75 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 17 72 91 -8.461 -0.015 -7.115 1.866 -3.370 -2.908 -3.014 D 19 17 3 20 3 0 11 70 90 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 15 74 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 21 20 3 23 3 1 16 70 89 -8.461 -0.015 -7.115 -2.432 -2.270 -3.199 1.807 D 22 20 3 23 3 0 10 69 88 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 15 73 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 24 23 3 26 3 1 16 69 88 -8.461 -0.015 -7.115 1.866 -3.370 -2.908 -3.014 D 25 23 3 26 3 0 9 68 87 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 14 72 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - G - - - ML 27 26 3 29 3 1 15 68 87 -8.461 -0.015 -7.115 -0.807 -1.656 1.190 -0.269 D 28 26 3 29 3 0 9 67 86 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 13 71 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - U - - - ML 30 29 3 32 3 1 14 67 86 -8.461 -0.015 -7.115 -2.432 -2.270 -3.199 1.807 D 31 29 3 32 3 0 8 66 85 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 13 70 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - u - - - ML 33 32 3 35 3 1 14 66 85 -8.461 -0.015 -7.115 0.080 -0.999 -0.517 0.802 D 34 32 3 35 3 0 8 65 84 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 12 69 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - u - - - ML 36 35 3 38 3 1 13 65 84 -8.461 -0.015 -7.115 0.365 -0.989 -0.688 0.667 D 37 35 3 38 3 0 7 64 83 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 11 68 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - C - - - ML 39 38 3 41 3 1 12 64 83 -8.461 -0.015 -7.115 -1.301 1.371 -1.280 -0.746 D 40 38 3 41 3 0 6 63 82 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 11 67 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - A - - - ML 42 41 3 44 3 1 12 63 82 -8.461 -0.015 -7.115 1.729 -2.628 -1.676 -2.252 D 43 41 3 44 3 0 6 62 81 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 10 66 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - G - - - ML 45 44 3 47 3 1 11 62 81 -8.461 -0.015 -7.115 -0.779 -1.567 1.445 -1.486 D 46 44 3 47 3 0 5 61 80 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 10 65 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - a - - - ML 48 47 3 50 3 1 10 61 79 -8.461 -0.015 -7.115 0.662 -0.531 -1.201 0.369 D 49 47 3 50 3 0 5 60 79 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 9 63 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - C - - - ML 51 50 3 53 3 1 10 60 78 -8.461 -0.015 -7.115 -2.177 1.752 -3.201 -1.730 D 52 50 3 53 3 0 4 59 78 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 8 62 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - A - - - ML 54 53 3 56 3 1 9 58 77 -8.461 -0.015 -7.115 1.866 -3.370 -2.908 -3.014 D 55 53 3 56 3 0 4 58 76 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 8 61 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - U - - - ML 57 56 3 59 3 1 8 57 76 -8.461 -0.015 -7.115 -1.178 -1.596 -2.266 1.594 D 58 56 3 59 3 0 3 57 75 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 7 60 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - G - - - ML 60 59 3 62 3 1 8 56 75 -8.461 -0.015 -7.115 -2.586 -3.935 1.875 -3.310 D 61 59 3 62 3 0 3 55 74 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 6 59 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - g - - - ML 63 62 3 65 3 1 7 55 74 -8.461 -0.015 -7.115 -0.418 -0.910 0.731 0.083 D 64 62 3 65 3 0 2 54 73 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 6 58 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - A - - - ML 66 65 3 68 3 1 6 54 72 -8.824 -0.024 -6.100 1.866 -3.370 -2.908 -3.014 D 67 65 3 68 3 0 2 53 71 -5.620 -0.734 -1.403 IL 68 68 3 68 3 1 5 55 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 64 - a - - MR 69 68 3 71 3 1 6 53 71 -8.813 -0.014 -7.131 0.892 0.210 -1.457 -0.683 D 70 68 3 71 3 0 0 51 70 -6.510 -1.358 -0.740 IR 71 71 3 71 3 1 4 54 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 63 - G - - MR 72 71 3 74 3 1 5 52 70 -8.824 -0.013 -7.142 -1.450 -3.154 1.747 -2.592 D 73 71 3 74 3 0 0 50 69 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 4 53 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 62 - G - - MR 75 74 3 77 3 1 5 51 69 -8.824 -0.013 -7.142 -2.053 -3.585 1.828 -2.996 D 76 74 3 77 3 0 0 49 68 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 3 52 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 61 - C - - MR 78 77 3 80 3 1 4 50 68 -8.824 -0.013 -7.142 -2.354 1.713 -3.199 -1.265 D 79 77 3 80 3 0 0 48 67 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 3 51 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 60 - G - - MR 81 80 3 83 3 1 4 49 67 -8.824 -0.013 -7.142 -0.614 -1.647 1.196 -0.440 D 82 80 3 83 3 0 0 47 66 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 2 50 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 59 - A - - MR 84 83 3 86 3 1 3 48 66 -8.824 -0.013 -7.142 1.710 -2.564 -1.559 -2.181 D 85 83 3 86 3 0 0 46 65 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 2 49 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 58 - A - - MR 87 86 3 89 3 1 2 47 65 -8.824 -0.013 -7.142 1.866 -3.370 -2.908 -3.014 D 88 86 3 89 3 0 0 45 64 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 1 48 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 57 - U - - MR 90 89 3 92 3 1 1 46 64 -8.824 -0.461 -1.881 -2.432 -2.270 -3.199 1.807 D 91 89 3 92 3 0 0 45 63 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 1 47 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 56 - c - - MR 93 92 3 95 3 1 1 45 63 -8.381 -0.018 -6.699 -0.744 0.624 -1.534 0.600 D 94 92 3 95 3 0 0 44 62 -8.408 -0.258 -2.638 IR 95 95 3 95 3 1 1 46 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 55 - C - - MR 96 95 3 98 3 1 1 44 62 -8.824 -0.013 -7.142 -2.941 1.835 -3.750 -2.131 D 97 95 3 98 3 0 0 42 61 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 1 45 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 54 - G - - MR 99 98 3 101 3 1 1 43 61 -8.824 -0.013 -7.142 -1.296 -3.044 1.719 -2.486 D 100 98 3 101 3 0 0 41 60 -6.390 -1.568 -0.620 IR 101 101 3 101 3 1 1 44 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 53 - A - - MR 102 101 3 104 3 1 1 42 60 -3.070 -0.306 -3.793 1.866 -3.370 -2.908 -3.014 D 103 101 3 104 3 0 0 40 59 -6.390 -1.568 -0.620 IR 104 104 3 104 3 1 1 42 61 -2.537 -0.338 -4.776 0.000 0.000 0.000 0.000 [ MATR 35 ] - 51 - A - - MR 105 104 3 107 3 1 1 41 59 -8.727 -0.014 -7.045 1.845 -3.169 -2.725 -2.794 D 106 104 3 107 3 0 0 39 58 -7.198 -0.686 -1.427 IR 107 107 3 107 3 1 1 42 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 50 - A - - MR 108 107 3 110 3 1 1 40 58 -8.824 -0.013 -7.142 1.866 -3.370 -2.908 -3.014 D 109 107 3 110 3 0 0 38 56 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 1 41 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 49 - c - - MR 111 110 3 113 3 1 1 39 57 -8.824 -0.013 -7.142 -1.020 0.968 -1.937 0.366 D 112 110 3 113 3 0 0 37 55 -6.390 -1.568 -0.620 IR 113 113 3 113 3 1 1 40 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 48 - G - - MR 114 113 3 116 3 1 1 38 56 -8.824 -0.013 -7.142 -1.837 -2.905 1.727 -1.855 D 115 113 3 116 3 0 0 36 54 -6.390 -1.568 -0.620 IR 116 116 3 116 3 1 1 39 57 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 39 ] - 47 - U - - MR 117 116 3 119 3 1 1 37 55 -8.824 -0.013 -7.142 -0.457 -0.228 -1.559 1.055 D 118 116 3 119 3 0 0 35 54 -6.390 -1.568 -0.620 IR 119 119 3 119 3 1 1 38 56 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 40 ] - 46 - A - - MR 120 119 3 122 3 1 1 36 54 -8.824 -0.239 -2.731 1.783 -2.845 -2.051 -2.488 D 121 119 3 122 3 0 0 34 53 -6.390 -1.568 -0.620 IR 122 122 3 122 3 1 1 37 55 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 41 ] - 45 - A - - MR 123 122 3 125 3 1 1 35 53 -8.600 -0.016 -6.918 1.357 -1.790 -0.439 -1.282 D 124 122 3 125 3 0 0 33 52 -7.799 -0.414 -2.029 IR 125 125 3 125 3 1 1 36 54 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 42 ] - 44 - A - - MR 126 125 3 128 5 1 1 34 52 -7.536 -0.029 -7.351 -7.563 -8.455 1.349 -0.955 -1.133 -1.057 D 127 125 3 128 5 0 0 32 51 -5.352 -0.707 -2.978 -4.409 -2.404 IR 128 128 3 128 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 23 43 A U - - MP 129 128 3 133 6 2 2 33 51 -9.333 -9.272 -0.018 -8.049 -8.328 -8.723 -1.117 -3.356 -4.074 3.564 -4.594 -5.474 -0.632 -4.217 -4.121 0.372 -4.687 -0.946 -0.898 -4.632 -2.423 -3.070 ML 130 128 3 133 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 3 133 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 3 133 6 0 0 29 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 24 42 u g - - MP 135 134 6 139 6 2 2 31 49 -9.333 -9.272 -0.018 -8.049 -8.328 -8.723 -4.195 -4.224 -4.011 -0.510 -2.852 -4.513 1.899 -3.607 -4.037 -0.356 -4.390 -2.296 2.057 -4.312 2.510 -2.914 ML 136 134 6 139 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 25 41 C G - - MP 141 140 6 145 6 2 2 29 47 -9.333 -9.272 -0.018 -8.049 -8.328 -8.723 -5.658 -5.657 -5.148 -1.827 -3.668 -5.412 3.787 -4.591 -5.258 -1.702 -5.375 -3.645 -0.296 -5.649 -1.426 -4.069 ML 142 140 6 145 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 26 40 G C - - MP 147 146 6 151 6 2 2 27 45 -9.333 -9.272 -0.018 -8.049 -8.328 -8.723 -5.221 -3.363 -5.348 0.281 -6.161 -4.989 -1.313 -5.706 -4.711 3.713 -5.021 -1.061 -1.623 -4.816 -3.377 -4.219 ML 148 146 6 151 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 6 151 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 27 39 C G - - MP 153 152 6 157 6 2 2 25 43 -9.333 -9.272 -0.018 -8.049 -8.328 -8.723 -5.658 -5.657 -5.148 -1.827 -3.668 -5.412 3.787 -4.591 -5.258 -1.702 -5.375 -3.645 -0.296 -5.649 -1.426 -4.069 ML 154 152 6 157 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 6 157 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 28 38 C G - - MP 159 158 6 163 6 2 2 23 41 -9.333 -9.272 -0.018 -8.049 -8.328 -8.723 -4.206 -4.157 -4.040 -0.301 -2.857 -4.583 3.079 -3.601 -4.034 -0.114 -4.409 -2.078 1.901 -4.325 0.155 -2.870 ML 160 158 6 163 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 6 163 6 0 0 19 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 29 37 G C - - MP 165 164 6 169 4 2 2 21 39 -1.654 -7.684 -0.593 -6.098 -4.063 -2.786 -3.992 0.752 -4.587 -4.465 0.719 -4.449 -4.116 3.290 -4.443 0.087 -0.224 -3.855 -1.921 -2.931 ML 166 164 6 169 4 1 1 19 37 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 4 1 1 18 37 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 168 164 6 169 4 0 0 17 36 -4.568 -4.250 -2.265 -0.520 IL 169 169 5 169 4 1 1 20 38 -3.257 -0.457 -2.688 -6.425 0.000 0.000 0.000 0.000 IR 170 170 6 170 3 1 1 18 37 -2.421 -0.350 -5.121 0.000 0.000 0.000 0.000 [ MATL 50 ] 31 - a - - - ML 171 170 6 173 3 1 1 17 36 -8.461 -0.015 -7.115 0.900 -1.452 0.183 -0.659 D 172 170 6 173 3 0 0 17 35 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 32 - a - - - ML 174 173 3 176 3 1 1 16 34 -8.461 -0.015 -7.115 0.376 0.049 -1.231 0.312 D 175 173 3 176 3 0 0 16 34 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 33 - a - - - ML 177 176 3 179 3 1 1 14 33 -8.461 -0.015 -7.115 0.662 -0.331 -1.028 0.180 D 178 176 3 179 3 0 0 14 33 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 34 - C - - - ML 180 179 3 182 3 1 1 13 31 -8.461 -0.521 -1.737 -0.484 1.002 -1.750 -0.022 D 181 179 3 182 3 0 0 13 32 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 35 - g - - - ML 183 182 3 185 2 1 1 1 1 * 0.000 0.013 -0.063 0.263 -0.262 D 184 182 3 185 2 0 0 0 0 * 0.000 IL 185 185 3 185 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 55 ] - - - - - - E 186 185 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME porB ACC RF03042 DESC porB RNA LENG 61 MAXL 138 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 4 20:38:47 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03042/CM NSEQ 85 EFFN 4.090729 CKSUM 4165252027 STATS LOCAL MSV -8.0073 0.71906 STATS LOCAL VITERBI -8.6215 0.71906 STATS LOCAL FORWARD -2.8492 0.71906 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.16185 1.50819 1.42556 1.48984 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 0.00000 * 1 3.65820 0.09156 4.20062 3.06333 1 C - - : 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 2 0.07485 3.92536 3.58937 3.69809 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 3 1.53638 2.34426 2.64382 0.48153 3 U - - : 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 4 2.32524 1.21373 2.88512 0.59910 4 U - - : 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 5 3.27027 3.12778 3.80685 0.10985 5 U - - : 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 6 0.07485 3.92536 3.58937 3.69809 6 A - - : 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 7 3.27027 3.12778 3.80685 0.10985 7 U - - : 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 8 0.07485 3.92536 3.58937 3.69809 8 A - - : 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 9 2.02927 2.63464 0.52034 1.59698 9 G - - : 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 10 3.27027 3.12778 3.80685 0.10985 10 U - - : 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 11 1.33586 2.13091 1.74786 0.81150 11 u - - : 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 12 1.12595 2.12192 1.87710 0.90926 12 u - - : 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 13 2.43015 0.38793 2.32059 2.00025 13 C - - : 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 14 0.16499 3.35603 2.61689 3.11910 14 A - - : 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 15 1.99667 2.51688 0.35097 2.53205 15 G - - : 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 16 0.90947 1.76958 2.26775 1.12913 16 a - - : 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 17 3.05767 0.14253 3.79099 2.76032 17 C - - : 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 18 0.07485 3.92536 3.58937 3.69809 18 A - - : 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 19 2.28999 2.61007 3.09563 0.24852 19 U - - : 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 20 3.36988 4.32330 0.07074 3.88045 20 G - - : 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 21 1.72518 2.05317 0.83929 1.34126 21 g - - : 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 22 0.07485 3.92536 3.58937 3.69809 22 A - - : 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 23 0.20170 3.29060 2.28829 3.12382 23 A - - < 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 24 3.02751 1.43968 2.83740 0.42162 24 U - - < 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 25 3.91450 0.11650 3.77620 2.70144 25 C - - < 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 26 2.50712 3.65021 0.14665 3.54336 26 G - - < 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 27 3.91817 0.11631 3.77827 2.70216 27 C - - < 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 28 2.86135 0.58367 2.63321 1.16118 28 C - - < 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 29 2.14244 2.22117 0.36010 2.56985 29 G - - < 1.38629 1.38629 1.38629 1.38629 0.41023 1.13061 4.29292 0.08261 2.53469 1.09861 0.40547 30 0.74125 2.47011 1.24127 1.89784 31 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 31 1.11835 1.33658 2.29050 1.17370 32 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 32 0.91153 1.61745 2.13516 1.26776 33 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 33 1.76375 0.65234 2.69725 1.42553 34 C - - _ 1.38629 1.38629 1.38629 1.38629 0.42862 4.29292 1.09384 1.46634 0.26236 1.09861 0.40547 34 1.39808 1.41527 1.17211 1.60765 35 g - - _ 1.38629 1.38629 1.38629 1.38629 0.68474 0.74308 3.90539 0.08261 2.53469 0.07844 2.58437 35 2.81725 0.44524 2.10225 1.72947 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 36 1.38754 2.80213 0.48271 2.62385 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 37 2.98264 3.94262 0.09965 3.69728 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 38 3.73640 0.17159 3.48865 2.27020 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 39 2.98542 3.94721 0.09926 3.70234 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 40 1.27640 3.00441 0.49300 2.80349 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 41 2.77059 2.59133 3.10907 0.20112 43 U - - > 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 42 0.41948 2.07093 2.22643 2.21983 44 A - - : 1.38629 1.38629 1.38629 1.38629 0.21315 4.29292 1.72428 1.46634 0.26236 1.09861 0.40547 43 0.41477 2.73732 1.69394 2.39720 45 A - - : 1.38629 1.38629 1.38629 1.38629 0.03326 4.11303 4.11303 1.46634 0.26236 0.14261 2.01810 44 0.12938 3.51840 2.90713 3.29471 46 A - - : 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 45 1.73954 1.54476 2.54219 0.63047 47 U - - : 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 46 2.80870 3.55808 0.16516 2.75723 48 G - - : 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 47 2.18010 0.67774 2.83764 1.13743 49 C - - : 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 48 0.07485 3.92536 3.58937 3.69809 50 A - - : 1.38629 1.38629 1.38629 1.38629 0.10748 4.29292 2.42765 1.46634 0.26236 1.09861 0.40547 49 0.08679 3.78367 3.45850 3.54342 51 A - - : 1.38629 1.38629 1.38629 1.38629 0.19416 1.82194 4.21541 0.17357 1.83668 0.26981 1.44192 50 0.07485 3.92536 3.58937 3.69809 53 A - - : 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 51 2.36653 3.65098 0.17167 3.27092 54 G - - : 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 52 3.65820 0.09156 4.20062 3.06333 55 C - - : 1.38629 1.38629 1.38629 1.38629 0.38030 4.29292 1.19509 1.46634 0.26236 1.09861 0.40547 53 1.97548 0.91612 2.53256 0.96291 56 c - - : 1.38629 1.38629 1.38629 1.38629 0.03920 3.95182 3.95182 1.46634 0.26236 0.08645 2.49112 54 3.27027 3.12778 3.80685 0.10985 57 U - - : 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 55 0.07485 3.92536 3.58937 3.69809 58 A - - : 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 56 0.17786 3.30911 2.52781 3.06698 59 A - - : 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 57 1.87382 2.62032 0.51876 1.72357 60 G - - : 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 58 3.20966 0.16979 3.79027 2.37301 61 C - - : 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 59 2.94588 4.05670 0.10087 3.64640 62 G - - : 1.38629 1.38629 1.38629 1.38629 0.02771 4.29292 4.29292 1.46634 0.26236 1.09861 0.40547 60 2.48271 3.73274 0.15384 3.34814 63 G - - : 1.38629 1.38629 1.38629 1.38629 0.03692 4.29292 3.79069 1.46634 0.26236 1.09861 0.40547 61 0.73942 1.21478 2.48879 1.94614 64 a - - : 1.38629 1.38629 1.38629 1.38629 0.01408 4.27008 * 1.46634 0.26236 0.00000 * //