INFERNAL1/a [1.1.4 | Dec 2020] NAME porB ACC RF03042 DESC porB RNA STATES 187 NODES 56 CLEN 61 W 77 ALPH RNA RF no CONS yes MAP yes DATE Mon Oct 1 20:28:06 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmcalibrate --cpu 8 CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 85 EFFN 3.504486 CKSUM 4165252027 NULL 0.000 0.000 0.000 0.000 GA 35.10 TC 35.10 NC 33.90 EFP7GF -10.1808 0.71905 ECMLC 0.51722 -10.82212 1.47018 1600000 692385 0.001733 ECMGC 0.41440 -16.94765 -3.06635 1600000 125984 0.003175 ECMLI 0.50282 -8.61033 3.08291 1600000 429185 0.002796 ECMGI 0.42078 -12.55222 0.18058 1600000 84892 0.004712 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 77 96 -7.481 -7.688 -0.037 -6.102 IL 1 1 2 1 4 1 20 81 101 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 20 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - C - - - ML 3 2 3 5 3 1 20 77 96 -8.465 -0.015 -7.120 -2.950 1.836 -3.759 -2.139 D 4 2 3 5 3 0 14 76 95 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 19 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 1 20 76 95 -8.465 -0.015 -7.120 1.867 -3.378 -2.915 -3.023 D 7 5 3 8 3 0 13 74 94 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 18 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 19 75 94 -8.465 -0.015 -7.120 -0.198 -1.256 -1.682 1.262 D 10 8 3 11 3 0 13 73 93 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 17 77 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 12 11 3 14 3 1 18 74 93 -8.465 -0.015 -7.120 -1.200 0.202 -1.996 1.114 D 13 11 3 14 3 0 12 72 92 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 17 76 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - U - - - ML 15 14 3 17 3 1 18 73 92 -8.465 -0.015 -7.120 -2.440 -2.277 -3.208 1.808 D 16 14 3 17 3 0 11 71 91 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 16 75 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 17 72 91 -8.465 -0.015 -7.120 1.867 -3.378 -2.915 -3.023 D 19 17 3 20 3 0 11 70 90 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 15 74 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 21 20 3 23 3 1 16 70 89 -8.465 -0.015 -7.120 -2.440 -2.277 -3.208 1.808 D 22 20 3 23 3 0 10 69 88 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 15 73 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 24 23 3 26 3 1 16 69 88 -8.465 -0.015 -7.120 1.867 -3.378 -2.915 -3.023 D 25 23 3 26 3 0 9 68 87 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 14 72 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - G - - - ML 27 26 3 29 3 1 15 68 87 -8.465 -0.015 -7.120 -0.788 -1.625 1.161 -0.217 D 28 26 3 29 3 0 9 67 86 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 13 71 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - U - - - ML 30 29 3 32 3 1 14 67 86 -8.465 -0.015 -7.120 -2.440 -2.277 -3.208 1.808 D 31 29 3 32 3 0 8 66 85 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 13 70 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - u - - - ML 33 32 3 35 3 1 14 66 85 -8.465 -0.015 -7.120 0.100 -0.999 -0.520 0.791 D 34 32 3 35 3 0 8 65 84 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 12 69 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - u - - - ML 36 35 3 38 3 1 13 65 84 -8.465 -0.015 -7.120 0.384 -0.991 -0.683 0.650 D 37 35 3 38 3 0 7 64 83 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 11 68 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - C - - - ML 39 38 3 41 3 1 12 64 83 -8.465 -0.015 -7.120 -1.294 1.366 -1.284 -0.726 D 40 38 3 41 3 0 6 63 82 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 11 67 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - A - - - ML 42 41 3 44 3 1 12 63 82 -8.465 -0.015 -7.120 1.726 -2.618 -1.650 -2.242 D 43 41 3 44 3 0 6 62 81 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 10 66 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - G - - - ML 45 44 3 47 3 1 11 62 81 -8.465 -0.015 -7.120 -0.781 -1.543 1.441 -1.479 D 46 44 3 47 3 0 5 61 80 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 10 65 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - a - - - ML 48 47 3 50 3 1 10 61 79 -8.465 -0.015 -7.120 0.644 -0.497 -1.200 0.372 D 49 47 3 50 3 0 5 60 79 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 9 63 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - C - - - ML 51 50 3 53 3 1 10 60 78 -8.465 -0.015 -7.120 -2.193 1.755 -3.215 -1.742 D 52 50 3 53 3 0 4 59 78 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 8 62 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - A - - - ML 54 53 3 56 3 1 9 58 77 -8.465 -0.015 -7.120 1.867 -3.378 -2.915 -3.023 D 55 53 3 56 3 0 4 58 76 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 8 61 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - U - - - ML 57 56 3 59 3 1 8 57 76 -8.465 -0.015 -7.120 -1.192 -1.604 -2.278 1.598 D 58 56 3 59 3 0 3 57 75 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 7 60 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - G - - - ML 60 59 3 62 3 1 7 56 75 -8.465 -0.015 -7.120 -2.594 -3.943 1.875 -3.318 D 61 59 3 62 3 0 3 55 74 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 6 59 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - g - - - ML 63 62 3 65 3 1 7 55 74 -8.465 -0.015 -7.120 -0.414 -0.888 0.707 0.107 D 64 62 3 65 3 0 2 54 73 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 6 58 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - A - - - ML 66 65 3 68 3 1 6 54 72 -8.828 -0.026 -6.001 1.867 -3.378 -2.915 -3.023 D 67 65 3 68 3 0 2 53 71 -5.620 -0.734 -1.403 IL 68 68 3 68 3 1 5 55 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 64 - a - - MR 69 68 3 71 3 1 6 53 71 -8.816 -0.014 -7.133 0.910 0.188 -1.460 -0.693 D 70 68 3 71 3 0 0 51 70 -6.526 -1.333 -0.756 IR 71 71 3 71 3 1 4 54 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 63 - G - - MR 72 71 3 74 3 1 5 52 70 -8.828 -0.013 -7.146 -1.472 -3.173 1.751 -2.611 D 73 71 3 74 3 0 0 50 69 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 4 53 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 62 - G - - MR 75 74 3 77 3 1 5 51 69 -8.828 -0.013 -7.146 -2.069 -3.600 1.830 -3.009 D 76 74 3 77 3 0 0 49 68 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 3 52 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 61 - C - - MR 78 77 3 80 3 1 4 50 68 -8.828 -0.013 -7.146 -2.369 1.717 -3.213 -1.280 D 79 77 3 80 3 0 0 48 67 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 2 51 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 60 - G - - MR 81 80 3 83 3 1 4 49 67 -8.828 -0.013 -7.146 -0.600 -1.614 1.167 -0.380 D 82 80 3 83 3 0 0 47 66 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 2 50 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 59 - A - - MR 84 83 3 86 3 1 3 48 66 -8.828 -0.013 -7.146 1.714 -2.580 -1.580 -2.199 D 85 83 3 86 3 0 0 46 65 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 2 49 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 58 - A - - MR 87 86 3 89 3 1 2 47 65 -8.828 -0.013 -7.146 1.867 -3.378 -2.915 -3.023 D 88 86 3 89 3 0 0 45 64 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 1 48 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 57 - U - - MR 90 89 3 92 3 1 1 46 64 -8.828 -0.452 -1.906 -2.440 -2.277 -3.208 1.808 D 91 89 3 92 3 0 0 45 63 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 1 47 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 56 - u - - MR 93 92 3 95 3 1 1 45 63 -8.394 -0.018 -6.712 -0.751 0.600 -1.540 0.628 D 94 92 3 95 3 0 0 44 62 -8.392 -0.261 -2.622 IR 95 95 3 95 3 1 1 46 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 55 - C - - MR 96 95 3 98 3 1 1 44 62 -8.828 -0.013 -7.146 -2.950 1.836 -3.759 -2.139 D 97 95 3 98 3 0 0 42 61 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 1 45 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 54 - G - - MR 99 98 3 101 3 1 1 43 61 -8.828 -0.013 -7.146 -1.319 -3.063 1.724 -2.506 D 100 98 3 101 3 0 0 41 60 -6.390 -1.568 -0.620 IR 101 101 3 101 3 1 1 44 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 53 - A - - MR 102 101 3 104 3 1 1 42 60 -2.973 -0.320 -3.807 1.867 -3.378 -2.915 -3.023 D 103 101 3 104 3 0 0 40 59 -6.390 -1.568 -0.620 IR 104 104 3 104 3 1 1 42 60 -2.574 -0.328 -4.812 0.000 0.000 0.000 0.000 [ MATR 35 ] - 51 - A - - MR 105 104 3 107 3 1 1 41 59 -8.732 -0.014 -7.050 1.847 -3.180 -2.734 -2.805 D 106 104 3 107 3 0 0 39 58 -7.193 -0.689 -1.423 IR 107 107 3 107 3 1 1 42 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 50 - A - - MR 108 107 3 110 3 1 1 40 58 -8.828 -0.013 -7.146 1.867 -3.378 -2.915 -3.023 D 109 107 3 110 3 0 0 38 56 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 1 41 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 49 - c - - MR 111 110 3 113 3 1 1 39 57 -8.828 -0.013 -7.146 -1.030 0.979 -1.948 0.356 D 112 110 3 113 3 0 0 37 55 -6.390 -1.568 -0.620 IR 113 113 3 113 3 1 1 40 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 48 - G - - MR 114 113 3 116 3 1 1 38 56 -8.828 -0.013 -7.146 -1.854 -2.927 1.731 -1.878 D 115 113 3 116 3 0 0 36 54 -6.390 -1.568 -0.620 IR 116 116 3 116 3 1 1 39 57 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 39 ] - 47 - U - - MR 117 116 3 119 3 1 1 37 55 -8.828 -0.013 -7.146 -0.455 -0.183 -1.555 1.035 D 118 116 3 119 3 0 0 35 54 -6.390 -1.568 -0.620 IR 119 119 3 119 3 1 1 38 56 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 40 ] - 46 - A - - MR 120 119 3 122 3 1 1 36 54 -8.828 -0.237 -2.744 1.785 -2.858 -2.065 -2.502 D 121 119 3 122 3 0 0 34 53 -6.390 -1.568 -0.620 IR 122 122 3 122 3 1 1 37 55 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 41 ] - 45 - A - - MR 123 122 3 125 3 1 1 35 53 -8.607 -0.016 -6.924 1.358 -1.797 -0.436 -1.289 D 124 122 3 125 3 0 0 33 52 -7.793 -0.416 -2.023 IR 125 125 3 125 3 1 1 36 54 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 42 ] - 44 - A - - MR 126 125 3 128 5 1 1 34 52 -7.540 -0.029 -7.355 -7.567 -8.459 1.344 -0.929 -1.140 -1.049 D 127 125 3 128 5 0 0 32 51 -5.352 -0.707 -2.978 -4.409 -2.404 IR 128 128 3 128 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 23 43 A U - - MP 129 128 3 133 6 2 2 33 51 -9.335 -9.274 -0.018 -8.051 -8.330 -8.725 -1.031 -3.327 -4.050 3.552 -4.559 -5.440 -0.604 -4.196 -4.088 0.397 -4.654 -0.920 -0.869 -4.598 -2.393 -3.043 ML 130 128 3 133 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 3 133 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 3 133 6 0 0 29 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 24 42 u g - - MP 135 134 6 139 6 2 2 31 49 -9.335 -9.274 -0.018 -8.051 -8.330 -8.725 -4.198 -4.227 -4.014 -0.512 -2.856 -4.516 1.890 -3.610 -4.040 -0.358 -4.393 -2.298 2.073 -4.314 2.505 -2.916 ML 136 134 6 139 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 25 41 C G - - MP 141 140 6 145 6 2 2 29 47 -9.335 -9.274 -0.018 -8.051 -8.330 -8.725 -5.668 -5.667 -5.156 -1.837 -3.675 -5.418 3.788 -4.599 -5.266 -1.713 -5.382 -3.656 -0.303 -5.658 -1.433 -4.078 ML 142 140 6 145 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 26 40 G C - - MP 147 146 6 151 6 2 2 27 45 -9.335 -9.274 -0.018 -8.051 -8.330 -8.725 -5.214 -3.361 -5.338 0.299 -6.156 -4.990 -1.308 -5.699 -4.709 3.710 -5.020 -1.057 -1.617 -4.812 -3.371 -4.210 ML 148 146 6 151 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 6 151 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 27 39 C G - - MP 153 152 6 157 6 2 2 25 43 -9.335 -9.274 -0.018 -8.051 -8.330 -8.725 -5.668 -5.667 -5.156 -1.837 -3.675 -5.418 3.788 -4.599 -5.266 -1.713 -5.382 -3.656 -0.303 -5.658 -1.433 -4.078 ML 154 152 6 157 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 6 157 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 28 38 C G - - MP 159 158 6 163 6 2 2 23 41 -9.335 -9.274 -0.018 -8.051 -8.330 -8.725 -4.194 -4.144 -4.033 -0.290 -2.857 -4.581 3.069 -3.598 -4.026 -0.104 -4.404 -2.065 1.897 -4.315 0.217 -2.863 ML 160 158 6 163 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 6 163 6 0 0 19 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 29 37 G C - - MP 165 164 6 169 4 2 2 21 39 -1.679 -7.688 -0.581 -6.102 -4.055 -2.784 -3.984 0.756 -4.569 -4.462 0.749 -4.438 -4.110 3.283 -4.438 0.079 -0.210 -3.849 -1.906 -2.922 ML 166 164 6 169 4 1 1 19 37 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 4 1 1 18 37 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 168 164 6 169 4 0 0 17 36 -4.568 -4.250 -2.265 -0.520 IL 169 169 5 169 4 1 1 20 38 -3.243 -0.462 -2.674 -6.412 0.000 0.000 0.000 0.000 IR 170 170 6 170 3 1 1 18 37 -2.410 -0.353 -5.110 0.000 0.000 0.000 0.000 [ MATL 50 ] 31 - a - - - ML 171 170 6 173 3 1 1 17 36 -8.465 -0.015 -7.120 0.885 -1.460 0.215 -0.669 D 172 170 6 173 3 0 0 17 35 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 32 - a - - - ML 174 173 3 176 3 1 1 16 34 -8.465 -0.015 -7.120 0.377 0.059 -1.234 0.304 D 175 173 3 176 3 0 0 16 34 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 33 - a - - - ML 177 176 3 179 3 1 1 14 33 -8.465 -0.015 -7.120 0.671 -0.343 -1.026 0.175 D 178 176 3 179 3 0 0 14 33 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 34 - c - - - ML 180 179 3 182 3 1 1 13 31 -8.465 -0.528 -1.720 -0.448 0.978 -1.727 -0.006 D 181 179 3 182 3 0 0 13 32 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 35 - g - - - ML 183 182 3 185 2 1 1 1 1 * 0.000 0.027 -0.066 0.251 -0.259 D 184 182 3 185 2 0 0 0 0 * 0.000 IL 185 185 3 185 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 55 ] - - - - - - E 186 185 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME porB ACC RF03042 DESC porB RNA LENG 61 MAXL 138 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Oct 1 20:28:06 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED NSEQ 85 EFFN 4.116669 CKSUM 4165252027 STATS LOCAL MSV -7.8891 0.71905 STATS LOCAL VITERBI -8.6279 0.71905 STATS LOCAL FORWARD -2.8442 0.71905 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.16109 1.50864 1.42706 1.48885 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 0.00000 * 1 3.66734 0.09077 4.20887 3.07130 1 C - - : 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 2 0.07422 3.93349 3.59691 3.70692 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 3 1.54547 2.35096 2.65311 0.47630 3 U - - : 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 4 2.33395 1.22925 2.89295 0.58849 4 U - - : 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 5 3.27822 3.13455 3.81497 0.10898 5 U - - : 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 6 0.07422 3.93349 3.59691 3.70692 6 A - - : 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 7 3.27822 3.13455 3.81497 0.10898 7 U - - : 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 8 0.07422 3.93349 3.59691 3.70692 8 A - - : 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 9 2.01635 2.61317 0.53939 1.55850 9 G - - : 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 10 3.27822 3.13455 3.81497 0.10898 10 U - - : 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 11 1.32103 2.13104 1.75042 0.81933 11 u - - : 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 12 1.11184 2.12372 1.87365 0.92156 12 u - - : 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 13 2.42560 0.39121 2.32336 1.98492 13 C - - : 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 14 0.16716 3.35055 2.59799 3.11337 14 A - - : 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 15 1.99947 2.49955 0.35287 2.52820 15 G - - : 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 16 0.92226 1.74381 2.26755 1.12712 16 a - - : 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 17 3.07086 0.14075 3.80228 2.77112 17 C - - : 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 18 0.07422 3.93349 3.59691 3.70692 18 A - - : 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 19 2.30114 2.61771 3.10563 0.24579 19 U - - : 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 20 3.37740 4.33154 0.07017 3.88821 20 G - - : 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 21 1.72240 2.03689 0.85648 1.32323 21 g - - : 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 22 0.07422 3.93349 3.59691 3.70692 22 A - - : 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 23 0.20623 3.27184 2.26760 3.10424 23 A - - < 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 24 3.03180 1.44684 2.84183 0.41834 24 U - - < 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 25 3.92348 0.11546 3.78612 2.70921 25 C - - < 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 26 2.49566 3.64845 0.14788 3.54071 26 G - - < 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 27 3.92711 0.11528 3.78817 2.70992 27 C - - < 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 28 2.85491 0.59029 2.62670 1.15215 28 C - - < 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 29 2.14032 2.20041 0.36458 2.56218 29 G - - < 1.38629 1.38629 1.38629 1.38629 0.41422 1.12248 4.29221 0.08201 2.54164 1.09861 0.40547 30 0.75159 2.47722 1.21810 1.90641 31 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 31 1.11797 1.32879 2.29394 1.17963 32 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 32 0.90470 1.62659 2.13371 1.27174 33 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 33 1.73727 0.66879 2.68137 1.41385 34 C - - _ 1.38629 1.38629 1.38629 1.38629 0.42251 4.29221 1.10586 1.46634 0.26236 1.09861 0.40547 34 1.38740 1.41752 1.18065 1.60503 35 g - - _ 1.38629 1.38629 1.38629 1.38629 0.68665 0.74085 3.91058 0.08201 2.54164 0.07941 2.57261 35 2.80972 0.44946 2.08289 1.73028 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 36 1.38951 2.79588 0.48326 2.61763 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 37 2.99039 3.95242 0.09876 3.70655 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 38 3.73428 0.17289 3.48658 2.26072 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 39 2.99320 3.95709 0.09836 3.71168 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 40 1.26482 3.00888 0.49755 2.80774 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 41 2.72671 2.57111 3.08934 0.20754 43 U - - > 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 42 0.42298 2.05188 2.23252 2.21499 44 A - - : 1.38629 1.38629 1.38629 1.38629 0.20717 4.29221 1.75192 1.46634 0.26236 1.09861 0.40547 43 0.41363 2.74387 1.69222 2.40439 45 A - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11813 4.11813 1.46634 0.26236 0.14642 1.99357 44 0.12781 3.52920 2.91854 3.30673 46 A - - : 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 45 1.73837 1.51092 2.53976 0.64512 47 U - - : 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 46 2.82284 3.57508 0.16226 2.77529 48 G - - : 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 47 2.18884 0.66991 2.84726 1.14509 49 C - - : 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 48 0.07422 3.93349 3.59691 3.70692 50 A - - : 1.38629 1.38629 1.38629 1.38629 0.10505 4.29221 2.45285 1.46634 0.26236 1.09861 0.40547 49 0.08590 3.79345 3.46751 3.55414 51 A - - : 1.38629 1.38629 1.38629 1.38629 0.19982 1.79347 4.21708 0.16866 1.86304 0.27599 1.42220 50 0.07422 3.93349 3.59691 3.70692 53 A - - : 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 51 2.38386 3.66710 0.16856 3.28674 54 G - - : 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 52 3.66734 0.09077 4.20887 3.07130 55 C - - : 1.38629 1.38629 1.38629 1.38629 0.38464 4.29221 1.18538 1.46634 0.26236 1.09861 0.40547 53 1.98156 0.93322 2.53845 0.94193 56 c - - : 1.38629 1.38629 1.38629 1.38629 0.03939 3.94696 3.94696 1.46634 0.26236 0.08571 2.49938 54 3.27822 3.13455 3.81497 0.10898 57 U - - : 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 55 0.07422 3.93349 3.59691 3.70692 58 A - - : 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 56 0.17490 3.32236 2.54433 3.08205 59 A - - : 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 57 1.86486 2.59747 0.53778 1.67892 60 G - - : 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 58 3.22310 0.16742 3.80276 2.38583 61 C - - : 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 59 2.95881 4.06922 0.09954 3.65827 62 G - - : 1.38629 1.38629 1.38629 1.38629 0.02773 4.29221 4.29221 1.46634 0.26236 1.09861 0.40547 60 2.49977 3.74865 0.15113 3.36363 63 G - - : 1.38629 1.38629 1.38629 1.38629 0.03767 4.29221 3.75972 1.46634 0.26236 1.09861 0.40547 61 0.72665 1.23048 2.49202 1.95488 64 a - - : 1.38629 1.38629 1.38629 1.38629 0.01410 4.26864 * 1.46634 0.26236 0.00000 * //