INFERNAL1/a [1.1.4 | Dec 2020] NAME narK ACC RF03032 DESC narK RNA STATES 220 NODES 67 CLEN 72 W 117 ALPH RNA RF no CONS yes MAP yes DATE Thu Dec 20 18:35:33 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmcalibrate --cpu 8 CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 308 EFFN 6.452698 CKSUM 694892403 NULL 0.000 0.000 0.000 0.000 GA 43.20 TC 43.20 NC 42.40 EFP7GF -12.4697 0.71877 ECMLC 0.70628 -9.20112 0.07131 1600000 838222 0.001432 ECMGC 0.37465 -21.80864 -7.89942 1600000 73319 0.005456 ECMLI 0.54120 -9.96034 1.60489 1600000 627290 0.001913 ECMGI 0.41422 -15.52384 -3.37309 1600000 61362 0.006519 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 117 175 -8.140 -8.347 -0.023 -6.761 IL 1 1 2 1 4 4 30 120 177 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 3 30 119 177 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 5 30 118 175 -9.097 -0.009 -7.751 -3.615 -5.065 1.941 -4.354 D 4 2 3 5 3 0 24 115 173 -6.174 -1.687 -0.566 IL 5 5 3 5 3 3 29 118 176 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 4 29 117 174 -9.097 -0.009 -7.751 -3.615 -5.065 1.941 -4.354 D 7 5 3 8 3 0 24 114 172 -6.174 -1.687 -0.566 IL 8 8 3 8 3 3 28 117 175 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - C - - - ML 9 8 3 11 3 4 28 116 173 -9.097 -0.009 -7.751 -4.158 1.927 -4.820 -3.231 D 10 8 3 11 3 0 23 113 171 -6.174 -1.687 -0.566 IL 11 11 3 11 3 2 27 116 174 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - a - - - ML 12 11 3 14 3 4 28 115 172 -9.097 -0.009 -7.751 0.709 0.103 -0.843 -0.447 D 13 11 3 14 3 0 22 112 170 -6.174 -1.687 -0.566 IL 14 14 3 14 3 2 27 115 173 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - C - - - ML 15 14 3 17 3 4 27 114 171 -9.097 -0.009 -7.751 -1.721 1.636 -3.179 -1.065 D 16 14 3 17 3 0 22 111 169 -6.174 -1.687 -0.566 IL 17 17 3 17 3 2 26 114 172 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 3 26 113 170 -9.097 -0.009 -7.751 1.203 -1.979 0.213 -1.812 D 19 17 3 20 3 0 21 110 168 -6.174 -1.687 -0.566 IL 20 20 3 20 3 2 25 113 171 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - g - - - ML 21 20 3 23 3 3 25 112 169 -9.097 -0.009 -7.751 -0.502 -0.355 0.419 0.233 D 22 20 3 23 3 0 20 109 167 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 24 112 170 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - c - - - ML 24 23 3 26 3 3 24 111 168 -9.097 -0.009 -7.751 0.052 0.385 -0.744 0.084 D 25 23 3 26 3 0 20 108 166 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 23 111 169 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - u - - - ML 27 26 3 29 3 2 23 110 167 -9.097 -0.014 -6.955 0.164 -0.723 -0.557 0.673 D 28 26 3 29 3 0 19 107 165 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 23 110 168 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - c - - - ML 30 29 3 32 3 2 22 109 166 -9.092 -0.009 -7.746 -0.316 0.929 -0.994 -0.339 D 31 29 3 32 3 0 18 106 164 -6.271 -1.493 -0.662 IL 32 32 3 32 3 1 22 109 167 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - U - - - ML 33 32 3 35 3 2 21 108 165 -9.097 -0.009 -7.751 -1.234 -1.081 -2.326 1.537 D 34 32 3 35 3 0 18 105 163 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 21 108 166 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - U - - - ML 36 35 3 38 3 2 20 107 164 -9.097 -0.009 -7.751 -2.090 -1.357 -2.417 1.672 D 37 35 3 38 3 0 17 104 162 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 20 107 165 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - G - - - ML 39 38 3 41 3 1 19 106 163 -9.097 -0.009 -7.751 -3.615 -5.065 1.941 -4.354 D 40 38 3 41 3 0 16 104 161 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 19 106 164 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - C - - - ML 42 41 3 44 3 1 18 105 162 -9.097 -0.009 -7.751 -4.158 1.927 -4.820 -3.231 D 43 41 3 44 3 0 16 103 160 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 18 105 163 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - U - - - ML 45 44 3 47 3 1 17 104 161 -9.097 -0.305 -2.405 -1.473 -1.925 -2.587 1.683 D 46 44 3 47 3 0 15 102 160 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 18 105 162 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - u - - - ML 48 47 3 50 3 1 17 103 160 -8.803 -0.019 -6.553 0.238 -0.593 -0.087 0.282 D 49 47 3 50 3 0 15 102 159 -8.417 -0.227 -2.809 IL 50 50 3 50 3 1 17 104 161 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - a - - - ML 51 50 3 53 3 1 16 102 159 -9.091 -0.009 -7.745 0.823 -0.673 -0.633 -0.060 D 52 50 3 53 3 0 13 100 157 -6.288 -1.463 -0.680 IL 53 53 3 53 3 1 16 103 160 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - a - - - ML 54 53 3 56 3 1 15 101 158 -9.097 -0.181 -3.110 0.783 -1.203 -0.023 -0.216 D 55 53 3 56 3 0 13 99 157 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 15 102 159 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - g - - - ML 57 56 3 59 3 1 14 100 157 -8.927 -0.030 -5.776 -0.195 -0.467 0.440 0.065 D 58 56 3 59 3 0 12 99 156 -7.876 -0.344 -2.268 IL 59 59 3 59 3 1 14 101 158 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - c - - - ML 60 59 3 62 3 1 13 99 156 -9.080 -0.009 -7.734 -0.102 0.564 -1.378 0.268 D 61 59 3 62 3 0 10 97 154 -6.478 -1.179 -0.870 IL 62 62 3 62 3 1 13 100 157 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - a - - - ML 63 62 3 65 3 1 12 98 155 -5.414 -0.044 -7.247 0.608 0.305 -1.285 -0.269 D 64 62 3 65 3 0 9 96 153 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 12 99 156 -1.351 -0.832 -4.429 0.000 0.000 0.000 0.000 [ MATL 22 ] 24 - a - - - ML 66 65 3 68 3 1 11 97 154 -9.094 -0.009 -7.748 0.472 0.069 -0.948 0.064 D 67 65 3 68 3 0 8 95 152 -6.230 -1.743 -0.540 IL 68 68 3 68 3 1 11 98 155 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 25 - u - - - ML 69 68 3 71 3 1 10 96 153 -9.094 -0.009 -7.748 -0.137 -0.145 -0.871 0.713 D 70 68 3 71 3 0 8 94 151 -6.230 -1.571 -0.621 IL 71 71 3 71 3 1 11 97 154 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 26 - c - - - ML 72 71 3 74 3 1 9 95 152 -9.097 -0.075 -4.365 -0.481 0.993 -1.055 -0.302 D 73 71 3 74 3 0 7 93 151 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 10 96 153 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 27 - c - - - ML 75 74 3 77 3 1 9 94 151 -9.032 -0.422 -1.989 0.078 0.135 -0.240 -0.000 D 76 74 3 77 3 0 7 93 150 -7.092 -1.624 -0.581 IL 77 77 3 77 3 1 9 95 152 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 28 - u - - - ML 78 77 3 80 3 1 8 93 151 -8.652 -0.087 -4.153 -0.352 0.260 -0.705 0.491 D 79 77 3 80 3 0 7 92 150 -8.847 -0.214 -2.880 IL 80 80 3 80 3 1 8 94 151 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 29 - c - - - ML 81 80 3 83 3 1 7 92 150 -9.029 -0.010 -7.683 -0.360 0.843 -0.993 -0.112 D 82 80 3 83 3 0 5 91 148 -7.126 -0.636 -1.518 IL 83 83 3 83 3 1 7 93 150 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 30 - A - - - ML 84 83 3 86 3 1 6 91 149 -9.097 -0.072 -4.412 1.250 -0.951 -0.789 -0.927 D 85 83 3 86 3 0 3 89 147 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 7 92 149 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 31 - C - - - ML 87 86 3 89 3 1 6 90 148 -9.035 -0.304 -2.412 -0.554 1.071 -0.892 -0.559 D 88 86 3 89 3 0 3 89 146 -7.068 -2.581 -0.277 IL 89 89 3 89 3 1 7 91 149 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 32 - a - - - ML 90 89 3 92 3 1 6 90 147 -2.395 -0.315 -7.411 0.555 0.168 -0.686 -0.347 D 91 89 3 92 3 0 2 88 146 -7.502 -0.165 -3.285 IL 92 92 3 92 3 1 5 90 147 -1.879 -0.504 -5.439 0.000 0.000 0.000 0.000 [ MATR 31 ] - 91 - C - - MR 93 92 3 95 3 1 6 88 146 -9.435 -0.009 -7.753 -1.272 1.188 -2.127 0.110 D 94 92 3 95 3 0 0 86 143 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 4 89 146 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 90 - G - - MR 96 95 3 98 3 1 5 87 145 -9.435 -0.009 -7.753 -1.395 -1.997 1.614 -1.702 D 97 95 3 98 3 0 0 85 142 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 3 88 145 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 89 - C - - MR 99 98 3 101 3 1 5 86 144 -9.435 -0.009 -7.753 -4.158 1.927 -4.820 -3.231 D 100 98 3 101 3 0 0 84 141 -6.390 -1.568 -0.620 IR 101 101 3 101 3 1 2 87 144 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 88 - U - - MR 102 101 3 104 3 1 4 85 143 -9.435 -0.009 -7.753 -2.190 -0.420 -2.971 1.539 D 103 101 3 104 3 0 0 83 140 -6.390 -1.568 -0.620 IR 104 104 3 104 3 1 2 86 143 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 87 - G - - MR 105 104 3 107 3 1 4 84 142 -9.435 -0.009 -7.753 -3.615 -5.065 1.941 -4.354 D 106 104 3 107 3 0 0 82 139 -6.390 -1.568 -0.620 IR 107 107 3 107 3 1 1 85 142 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 86 - C - - MR 108 107 3 110 3 1 3 83 141 -9.435 -0.009 -7.753 -3.889 1.902 -4.570 -2.708 D 109 107 3 110 3 0 0 81 138 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 1 84 141 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 85 - A - - MR 111 110 3 113 3 1 3 82 140 -9.435 -0.009 -7.753 1.038 -2.758 0.671 -2.281 D 112 110 3 113 3 0 0 80 137 -6.390 -1.568 -0.620 IR 113 113 3 113 3 1 1 83 140 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 84 - G - - MR 114 113 3 116 3 1 2 81 139 -9.435 -0.009 -7.753 -2.978 -3.576 1.891 -3.643 D 115 113 3 116 3 0 0 79 136 -6.390 -1.568 -0.620 IR 116 116 3 116 3 1 1 82 139 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 39 ] - 83 - A - - MR 117 116 3 119 3 1 2 80 138 -9.435 -0.009 -7.753 1.581 -1.360 -2.107 -1.371 D 118 116 3 119 3 0 0 78 135 -6.390 -1.568 -0.620 IR 119 119 3 119 3 1 1 81 138 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 40 ] - 82 - A - - MR 120 119 3 122 3 1 2 79 137 -5.299 -0.044 -7.753 1.918 -4.170 -3.341 -3.933 D 121 119 3 122 3 0 0 77 134 -6.390 -1.568 -0.620 IR 122 122 3 122 3 1 1 80 137 -2.146 -0.462 -4.385 0.000 0.000 0.000 0.000 [ MATR 41 ] - 80 - A - - MR 123 122 3 125 3 1 1 78 136 -9.435 -0.009 -7.753 1.859 -3.631 -2.339 -3.395 D 124 122 3 125 3 0 0 76 133 -6.390 -1.568 -0.620 IR 125 125 3 125 3 1 1 79 136 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 42 ] - 79 - C - - MR 126 125 3 128 3 1 1 77 135 -9.435 -0.009 -7.753 -4.158 1.927 -4.820 -3.231 D 127 125 3 128 3 0 0 75 132 -6.390 -1.568 -0.620 IR 128 128 3 128 3 1 1 78 135 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 43 ] - 78 - A - - MR 129 128 3 131 3 1 1 76 134 -9.435 -0.009 -7.753 1.916 -4.143 -3.294 -3.907 D 130 128 3 131 3 0 0 73 131 -6.390 -1.568 -0.620 IR 131 131 3 131 3 1 1 77 134 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 44 ] - 77 - G - - MR 132 131 3 134 3 1 1 75 133 -9.435 -0.009 -7.753 -3.615 -5.065 1.941 -4.354 D 133 131 3 134 3 0 0 71 129 -6.390 -1.568 -0.620 IR 134 134 3 134 3 1 1 76 133 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 45 ] - 76 - C - - MR 135 134 3 137 3 1 1 74 132 -2.155 -1.199 -1.557 -1.593 1.598 -1.911 -1.415 D 136 134 3 137 3 0 0 64 122 -6.390 -1.568 -0.620 IR 137 137 3 137 3 1 1 78 135 -0.464 -1.899 -7.214 0.000 0.000 0.000 0.000 [ MATR 46 ] - 67 - A - - MR 138 137 3 140 3 1 1 41 59 -8.846 -0.013 -7.164 1.395 -1.343 -1.058 -1.013 D 139 137 3 140 3 0 0 40 58 -9.178 -0.857 -1.164 IR 140 140 3 140 3 1 1 42 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 47 ] - 66 - a - - MR 141 140 3 143 3 1 1 40 58 -9.221 -0.010 -7.539 0.455 -0.043 -1.017 0.219 D 142 140 3 143 3 0 0 39 57 -8.169 -0.738 -1.332 IR 143 143 3 143 3 1 1 41 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 48 ] - 65 - c - - MR 144 143 3 146 3 1 1 39 57 -9.376 -0.009 -7.693 0.238 0.378 -1.179 0.109 D 145 143 3 146 3 0 0 38 55 -7.166 -1.315 -0.759 IR 146 146 3 146 3 1 1 40 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 49 ] - 64 - c - - MR 147 146 3 149 3 1 1 38 56 -9.405 -0.009 -7.723 -0.134 0.544 -1.461 0.342 D 148 146 3 149 3 0 0 36 54 -6.835 -1.782 -0.513 IR 149 149 3 149 3 1 1 39 57 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 50 ] - 63 - a - - MR 150 149 3 152 3 1 1 37 55 -9.410 -0.009 -7.728 0.454 -0.011 -0.980 0.177 D 151 149 3 152 3 0 0 35 53 -6.772 -1.950 -0.450 IR 152 152 3 152 3 1 1 38 56 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 51 ] - 62 - c - - MR 153 152 3 155 3 1 1 36 54 -9.410 -0.016 -6.726 0.208 0.612 -1.213 -0.175 D 154 152 3 155 3 0 0 35 52 -6.772 -1.615 -0.590 IR 155 155 3 155 3 1 1 37 55 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 52 ] - 61 - C - - MR 156 155 3 158 5 1 1 35 53 -1.888 -0.488 -6.502 -8.127 -9.018 -1.672 1.620 -2.335 -1.274 D 157 155 3 158 5 0 0 33 51 -5.574 -0.582 -3.201 -4.631 -2.626 IR 158 158 3 158 5 1 1 35 53 -3.731 -0.178 -7.242 -5.410 -6.516 0.000 0.000 0.000 0.000 [ MATP 53 ] 36 59 G C - - MP 159 158 3 163 6 2 2 34 52 -9.677 -9.616 -0.014 -8.392 -8.672 -9.067 -4.122 -1.772 -3.969 1.011 -4.971 -3.747 0.134 -4.621 -4.329 3.335 -4.592 -0.327 -0.127 -3.808 -2.126 -2.940 ML 160 158 3 163 6 1 1 32 50 -6.370 -6.716 -1.150 -1.125 -6.566 -4.095 0.623 -0.559 -0.261 -0.078 MR 161 158 3 163 6 1 1 32 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 3 163 6 0 0 30 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 34 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 33 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 37 58 G C - - MP 165 164 6 169 6 2 2 32 50 -4.157 -9.622 -0.096 -8.399 -8.679 -9.074 -4.044 -2.802 -3.901 0.845 -4.608 -4.512 0.979 -4.442 -4.249 3.180 -4.540 0.083 0.114 -3.790 -1.642 -2.849 ML 166 164 6 169 6 1 1 30 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 6 1 1 30 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 168 164 6 169 6 0 0 28 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 169 169 5 169 6 1 1 31 49 -3.429 -3.692 -0.372 -5.347 -6.123 -5.784 0.000 0.000 0.000 0.000 IR 170 170 6 170 5 1 1 31 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 55 ] 39 57 c g - - MP 171 170 6 175 6 2 2 30 47 -9.683 -9.622 -0.014 -8.399 -8.679 -9.074 -1.799 -2.409 -2.437 0.982 -2.267 -2.768 1.959 -2.679 -2.484 1.092 -3.048 -0.892 1.690 -2.368 1.168 -1.603 ML 172 170 6 175 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 173 170 6 175 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 174 170 6 175 6 0 0 26 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 175 175 5 175 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 176 176 6 176 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 56 ] 40 56 a u - - MP 177 176 6 181 6 2 2 28 45 -9.683 -9.622 -0.014 -8.399 -8.679 -9.074 -2.731 -1.704 -2.837 2.390 -2.970 -3.623 0.922 -3.220 -2.475 2.041 -2.893 -0.323 0.859 -2.905 -0.943 -1.993 ML 178 176 6 181 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 179 176 6 181 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 180 176 6 181 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 181 181 5 181 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 182 182 6 182 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 57 ] 41 55 g c - - MP 183 182 6 187 6 2 2 26 43 -9.683 -5.415 -0.047 -8.399 -8.679 -9.074 -3.642 -0.559 -3.697 1.837 -4.356 -4.247 0.010 -4.135 -3.792 2.364 -4.089 1.814 0.097 -3.633 -1.874 -2.254 ML 184 182 6 187 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 185 182 6 187 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 186 182 6 187 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 187 187 5 187 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 188 188 6 188 5 1 1 25 43 -2.668 -0.402 -6.179 -4.346 -5.452 0.000 0.000 0.000 0.000 [ MATP 58 ] 42 53 C G - - MP 189 188 6 193 6 2 2 23 41 -9.683 -9.622 -0.014 -8.399 -8.679 -9.074 -5.424 -5.447 -5.013 -1.513 -3.541 -5.351 3.467 -4.382 -5.042 -1.366 -5.293 -3.401 1.700 -5.411 -1.078 -3.832 ML 190 188 6 193 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 191 188 6 193 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 192 188 6 193 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 193 193 5 193 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 194 194 6 194 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 59 ] 43 52 C G - - MP 195 194 6 199 4 2 2 21 39 -4.593 -8.347 -0.080 -6.761 -5.641 -5.526 -5.208 -0.284 -3.767 -5.559 3.724 -4.603 -5.239 -1.566 -5.465 -3.371 -0.276 -5.675 -1.447 -4.045 ML 196 194 6 199 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 197 194 6 199 4 1 1 21 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 198 194 6 199 4 0 0 20 38 -4.568 -4.250 -2.265 -0.520 IL 199 199 5 199 4 1 1 22 40 -2.149 -1.268 -1.581 -5.318 0.000 0.000 0.000 0.000 IR 200 200 6 200 3 1 1 21 39 -1.689 -0.639 -4.389 0.000 0.000 0.000 0.000 [ MATL 60 ] 45 - A - - - ML 201 200 6 203 3 1 1 18 36 -9.097 -0.009 -7.751 1.941 -4.506 -3.973 -4.224 D 202 200 6 203 3 0 0 18 36 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 46 - A - - - ML 204 203 3 206 3 1 1 17 35 -9.097 -0.009 -7.751 1.941 -4.506 -3.973 -4.224 D 205 203 3 206 3 0 0 17 35 -6.174 -1.687 -0.566 IL 206 206 3 206 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 47 - C - - - ML 207 206 3 209 3 1 1 15 34 -9.097 -0.009 -7.751 -2.473 1.787 -3.691 -1.777 D 208 206 3 209 3 0 0 16 34 -6.174 -1.687 -0.566 IL 209 209 3 209 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 48 - G - - - ML 210 209 3 212 3 1 1 14 32 -9.097 -0.009 -7.751 -3.246 -4.889 1.929 -4.215 D 211 209 3 212 3 0 0 15 33 -6.174 -1.687 -0.566 IL 212 212 3 212 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 49 - G - - - ML 213 212 3 215 3 1 1 12 31 -9.097 -0.009 -7.751 -0.957 -1.386 1.351 -0.861 D 214 212 3 215 3 0 0 13 32 -6.174 -1.687 -0.566 IL 215 215 3 215 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 50 - C - - - ML 216 215 3 218 2 1 1 1 1 * 0.000 -2.785 1.778 -3.744 -1.512 D 217 215 3 218 2 0 0 0 0 * 0.000 IL 218 218 3 218 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 66 ] - - - - - - E 219 218 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME narK ACC RF03032 DESC narK RNA LENG 72 MAXL 148 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Dec 20 18:35:33 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED NSEQ 308 EFFN 9.441711 CKSUM 694892403 STATS LOCAL MSV -8.2999 0.71877 STATS LOCAL VITERBI -9.1753 0.71877 STATS LOCAL FORWARD -3.5508 0.71877 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.41185 1.17122 1.35452 1.67000 1.38629 1.38629 1.38629 1.38629 0.01499 4.90130 4.90130 1.46634 0.26236 0.00000 * 1 4.29277 5.34998 0.02700 4.80086 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.01499 4.90130 4.90130 1.46634 0.26236 1.09861 0.40547 2 4.29277 5.34998 0.02700 4.80086 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.01499 4.90130 4.90130 1.46634 0.26236 1.09861 0.40547 3 4.69462 0.03319 5.08217 4.05712 3 C - - : 1.38629 1.38629 1.38629 1.38629 0.01499 4.90130 4.90130 1.46634 0.26236 1.09861 0.40547 4 0.86215 1.26639 2.02152 1.81129 4 a - - : 1.38629 1.38629 1.38629 1.38629 0.01499 4.90130 4.90130 1.46634 0.26236 1.09861 0.40547 5 2.72901 0.20820 3.92113 2.27449 5 C - - : 1.38629 1.38629 1.38629 1.38629 0.01499 4.90130 4.90130 1.46634 0.26236 1.09861 0.40547 6 0.50449 2.99872 1.20260 3.08077 6 A - - : 1.38629 1.38629 1.38629 1.38629 0.01499 4.90130 4.90130 1.46634 0.26236 1.09861 0.40547 7 1.85681 1.62824 1.03407 1.23101 7 g - - : 1.38629 1.38629 1.38629 1.38629 0.01499 4.90130 4.90130 1.46634 0.26236 1.09861 0.40547 8 1.36906 1.06582 1.92925 1.36277 8 c - - : 1.38629 1.38629 1.38629 1.38629 0.01499 4.90130 4.90130 1.46634 0.26236 1.09861 0.40547 9 1.27806 1.94794 1.78253 0.89003 9 u - - : 1.38629 1.38629 1.38629 1.38629 0.01873 4.90130 4.49893 1.46634 0.26236 1.09861 0.40547 10 1.66573 0.66753 2.12090 1.72569 10 C - - : 1.38629 1.38629 1.38629 1.38629 0.01504 4.89761 4.89761 1.46634 0.26236 0.84907 0.55829 11 2.39692 2.23234 3.26890 0.26961 11 U - - : 1.38629 1.38629 1.38629 1.38629 0.01499 4.90130 4.90130 1.46634 0.26236 1.09861 0.40547 12 3.17405 2.43319 3.24575 0.18456 12 U - - : 1.38629 1.38629 1.38629 1.38629 0.01499 4.90130 4.90130 1.46634 0.26236 1.09861 0.40547 13 4.29277 5.34998 0.02700 4.80086 13 G - - : 1.38629 1.38629 1.38629 1.38629 0.01499 4.90130 4.90130 1.46634 0.26236 1.09861 0.40547 14 4.69462 0.03319 5.08217 4.05712 14 C - - : 1.38629 1.38629 1.38629 1.38629 0.01499 4.90130 4.90130 1.46634 0.26236 1.09861 0.40547 15 2.54724 2.96988 3.43870 0.17640 15 U - - : 1.38629 1.38629 1.38629 1.38629 0.23999 4.90130 1.58022 1.46634 0.26236 1.09861 0.40547 16 1.22374 1.83215 1.42164 1.18913 16 u - - : 1.38629 1.38629 1.38629 1.38629 0.02429 4.68004 4.21851 1.46634 0.26236 0.06974 2.69766 17 0.77745 1.88714 1.85088 1.46180 17 a - - : 1.38629 1.38629 1.38629 1.38629 0.01505 4.89693 4.89693 1.46634 0.26236 0.81565 0.58403 18 0.80689 2.33954 1.37864 1.58249 18 a - - : 1.38629 1.38629 1.38629 1.38629 0.14467 4.90130 2.06158 1.46634 0.26236 1.09861 0.40547 19 1.58601 1.71584 1.02229 1.36384 19 g - - : 1.38629 1.38629 1.38629 1.38629 0.03157 4.77367 3.78854 1.46634 0.26236 0.11054 2.25711 20 1.48641 0.93613 2.46779 1.21436 20 c - - : 1.38629 1.38629 1.38629 1.38629 0.01518 4.88874 4.88874 1.46634 0.26236 0.55777 0.84976 21 0.93679 1.11985 2.39948 1.65536 21 a - - : 1.38629 1.38629 1.38629 1.38629 0.04111 3.48202 4.65349 0.86496 0.54657 1.09861 0.40547 22 1.03945 1.30405 2.10646 1.37336 24 a - - : 1.38629 1.38629 1.38629 1.38629 0.01502 4.89920 4.89920 1.46634 0.26236 1.18821 0.36351 23 1.51619 1.48000 2.02700 0.86492 25 u - - : 1.38629 1.38629 1.38629 1.38629 0.01502 4.89920 4.89920 1.46634 0.26236 0.94041 0.49506 24 1.80215 0.62351 2.16527 1.69130 26 C - - : 1.38629 1.38629 1.38629 1.38629 0.06420 4.90130 2.90508 1.46634 0.26236 1.09861 0.40547 25 1.35441 1.24727 1.53514 1.43050 27 c - - : 1.38629 1.38629 1.38629 1.38629 0.33256 4.85283 1.29060 1.46634 0.26236 1.08526 0.41221 26 1.71343 1.15378 1.89312 1.03928 28 u - - : 1.38629 1.38629 1.38629 1.38629 0.07922 4.56459 2.72193 1.46634 0.26236 0.08470 2.51069 27 1.70648 0.72857 2.12313 1.53136 29 c - - : 1.38629 1.38629 1.38629 1.38629 0.01578 4.85035 4.85035 1.46634 0.26236 0.23147 1.57679 28 0.46351 2.09479 1.97899 2.21071 30 A - - : 1.38629 1.38629 1.38629 1.38629 0.06243 4.90130 2.93593 1.46634 0.26236 1.09861 0.40547 29 1.87068 0.56463 2.03185 1.92198 31 C - - : 1.38629 1.38629 1.38629 1.38629 0.24029 4.85458 1.58083 1.46634 0.26236 2.21239 0.11590 30 0.97711 1.21394 1.89821 1.73305 32 a - - : 1.38629 1.38629 1.38629 1.38629 0.26842 1.48857 4.63391 0.38001 1.15154 0.05963 2.84920 31 1.92319 2.62353 0.35161 2.55412 36 G - - < 1.38629 1.38629 1.38629 1.38629 0.01499 4.90130 4.90130 1.46634 0.26236 1.09861 0.40547 32 2.16319 2.04469 0.40692 2.40882 37 G - - < 1.38629 1.38629 1.38629 1.38629 0.11950 2.25191 4.90130 0.13584 2.06340 1.09861 0.40547 33 1.84163 1.29526 1.73599 0.93805 39 u - - < 1.38629 1.38629 1.38629 1.38629 0.01499 4.90130 4.90130 1.46634 0.26236 1.09861 0.40547 34 0.90031 2.10380 1.14588 1.87325 40 a - - < 1.38629 1.38629 1.38629 1.38629 0.01499 4.90130 4.90130 1.46634 0.26236 1.09861 0.40547 35 1.23595 2.89215 0.56714 2.44370 41 G - - < 1.38629 1.38629 1.38629 1.38629 0.01499 4.90130 4.90130 1.46634 0.26236 1.09861 0.40547 36 3.98253 0.31022 3.83065 1.48552 42 C - - < 1.38629 1.38629 1.38629 1.38629 0.01499 4.90130 4.90130 1.46634 0.26236 1.09861 0.40547 37 2.91687 0.14178 3.89384 2.85213 43 C - - < 1.38629 1.38629 1.38629 1.38629 0.05592 3.05863 4.90130 0.29134 1.37540 1.09861 0.40547 38 0.02560 4.98696 4.59973 4.78037 45 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01499 4.90130 4.90130 1.46634 0.26236 1.09861 0.40547 39 0.02560 4.98696 4.59973 4.78037 46 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01499 4.90130 4.90130 1.46634 0.26236 1.09861 0.40547 40 3.31706 0.11423 4.27333 2.85162 47 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01499 4.90130 4.90130 1.46634 0.26236 1.09861 0.40547 41 3.94159 5.21801 0.03450 4.70260 48 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01499 4.90130 4.90130 1.46634 0.26236 1.09861 0.40547 42 2.22070 2.42664 0.38842 2.07941 49 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01499 4.90130 4.90130 1.46634 0.26236 1.09861 0.40547 43 3.62409 0.12152 4.30513 2.60027 50 C - - _ 1.38629 1.38629 1.38629 1.38629 0.05592 3.05863 4.90130 0.29134 1.37540 1.09861 0.40547 44 3.13655 4.07515 0.12743 2.82645 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.01499 4.90130 4.90130 1.46634 0.26236 1.09861 0.40547 45 1.57434 3.97306 0.28735 3.73861 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.05592 3.05863 4.90130 0.29134 1.37540 1.09861 0.40547 46 2.68233 1.01586 2.69941 0.68864 55 U - - > 1.38629 1.38629 1.38629 1.38629 0.01499 4.90130 4.90130 1.46634 0.26236 1.09861 0.40547 47 2.02476 1.26189 1.90890 0.82871 56 u - - > 1.38629 1.38629 1.38629 1.38629 0.01499 4.90130 4.90130 1.46634 0.26236 1.09861 0.40547 48 1.41002 1.82821 0.86926 1.73784 57 g - - > 1.38629 1.38629 1.38629 1.38629 0.01499 4.90130 4.90130 1.46634 0.26236 1.09861 0.40547 49 2.66549 0.49385 1.92508 1.74699 58 C - - > 1.38629 1.38629 1.38629 1.38629 0.02293 4.90130 4.18452 1.46634 0.26236 1.09861 0.40547 50 2.77605 0.37886 2.50503 1.76375 59 C - - > 1.38629 1.38629 1.38629 1.38629 0.41211 1.16680 3.63487 0.04747 3.07132 0.68140 0.70503 51 2.73149 0.21121 3.13347 2.50465 61 C - - : 1.38629 1.38629 1.38629 1.38629 0.02103 4.88237 4.32504 1.46634 0.26236 1.18066 0.36683 52 1.24332 0.89558 2.32592 1.58227 62 c - - : 1.38629 1.38629 1.38629 1.38629 0.01528 4.88199 4.88199 1.46634 0.26236 1.71763 0.19783 53 1.05203 1.36850 2.13441 1.28025 63 a - - : 1.38629 1.38629 1.38629 1.38629 0.01910 4.88199 4.47951 1.46634 0.26236 1.71763 0.19783 54 1.51222 0.95078 2.54481 1.15629 64 c - - : 1.38629 1.38629 1.38629 1.38629 0.03863 4.87822 3.49725 1.46634 0.26236 1.80284 0.18012 55 1.21795 1.07156 2.30097 1.34120 65 c - - : 1.38629 1.38629 1.38629 1.38629 0.13842 4.85529 2.10804 1.46634 0.26236 2.20228 0.11715 56 1.04959 1.39337 2.16905 1.24690 66 a - - : 1.38629 1.38629 1.38629 1.38629 0.32398 4.73461 1.31697 1.46634 0.26236 3.16317 0.04321 57 0.35103 2.43997 2.23253 2.28656 67 A - - : 1.38629 1.38629 1.38629 1.38629 0.54356 0.89780 4.43463 1.55252 0.23789 0.03836 3.27983 58 2.69830 0.21931 2.78722 2.68798 76 C - - : 1.38629 1.38629 1.38629 1.38629 0.01499 4.90130 4.90130 1.46634 0.26236 1.09861 0.40547 59 4.29277 5.34998 0.02700 4.80086 77 G - - : 1.38629 1.38629 1.38629 1.38629 0.01499 4.90130 4.90130 1.46634 0.26236 1.09861 0.40547 60 0.03990 4.67796 3.96350 4.52646 78 A - - : 1.38629 1.38629 1.38629 1.38629 0.01499 4.90130 4.90130 1.46634 0.26236 1.09861 0.40547 61 4.69462 0.03319 5.08217 4.05712 79 C - - : 1.38629 1.38629 1.38629 1.38629 0.01499 4.90130 4.90130 1.46634 0.26236 1.09861 0.40547 62 0.07528 4.28143 3.14745 4.15202 80 A - - : 1.38629 1.38629 1.38629 1.38629 0.04240 3.37905 4.90130 0.39081 1.12858 1.09861 0.40547 63 0.03864 4.70019 4.00608 4.54667 82 A - - : 1.38629 1.38629 1.38629 1.38629 0.01499 4.90130 4.90130 1.46634 0.26236 1.09861 0.40547 64 0.24291 2.39785 3.11254 2.52248 83 A - - : 1.38629 1.38629 1.38629 1.38629 0.01499 4.90130 4.90130 1.46634 0.26236 1.09861 0.40547 65 3.84280 4.02067 0.05443 4.29739 84 G - - : 1.38629 1.38629 1.38629 1.38629 0.01499 4.90130 4.90130 1.46634 0.26236 1.09861 0.40547 66 0.62850 3.78916 0.88120 3.51636 85 A - - : 1.38629 1.38629 1.38629 1.38629 0.01499 4.90130 4.90130 1.46634 0.26236 1.09861 0.40547 67 4.48574 0.04835 4.88149 3.56316 86 C - - : 1.38629 1.38629 1.38629 1.38629 0.01499 4.90130 4.90130 1.46634 0.26236 1.09861 0.40547 68 4.29277 5.34998 0.02700 4.80086 87 G - - : 1.38629 1.38629 1.38629 1.38629 0.01499 4.90130 4.90130 1.46634 0.26236 1.09861 0.40547 69 3.31409 1.68383 3.85744 0.27859 88 U - - : 1.38629 1.38629 1.38629 1.38629 0.01499 4.90130 4.90130 1.46634 0.26236 1.09861 0.40547 70 4.69462 0.03319 5.08217 4.05712 89 C - - : 1.38629 1.38629 1.38629 1.38629 0.01499 4.90130 4.90130 1.46634 0.26236 1.09861 0.40547 71 2.51843 2.84556 0.23078 2.69716 90 G - - : 1.38629 1.38629 1.38629 1.38629 0.01499 4.90130 4.90130 1.46634 0.26236 1.09861 0.40547 72 2.46696 0.50291 3.06434 1.33293 91 C - - : 1.38629 1.38629 1.38629 1.38629 0.00752 4.89383 * 1.46634 0.26236 0.00000 * //