INFERNAL1/a [1.1.5 | Sep 2023] NAME salivarius-1 ACC RF03030 DESC salivarius-1 RNA STATES 177 NODES 45 CLEN 56 W 71 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 10 17:25:25 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03030/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 19 EFFN 4.188721 CKSUM 1922451685 NULL 0.000 0.000 0.000 0.000 GA 55.30 TC 55.30 NC 37.10 EFP7GF -13.5510 0.71930 ECMLC 0.67890 -5.26973 3.63957 1600000 508199 0.002361 ECMGC 0.41798 -16.14622 -2.49028 1600000 120501 0.003319 ECMLI 0.63797 -4.60099 4.46590 1600000 390234 0.003075 ECMGI 0.43929 -12.50474 -0.08904 1600000 93488 0.004279 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 71 91 -7.533 -8.778 -0.050 -5.232 IL 1 1 2 1 4 1 15 73 92 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 17 73 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 58 - U - - MR 3 2 3 5 3 1 19 71 91 -8.993 -0.012 -7.311 -2.761 -2.549 -3.536 1.846 D 4 2 3 5 3 0 11 70 89 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 16 72 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 57 - a - - MR 6 5 3 8 5 1 18 70 90 -7.697 -0.026 -7.513 -7.725 -8.617 0.667 -1.106 -0.579 0.353 D 7 5 3 8 5 0 11 69 88 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 14 71 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 1 56 G C - - MP 9 8 3 13 6 2 19 69 89 -9.423 -9.363 -0.017 -8.139 -8.419 -8.814 -4.388 -2.965 -4.366 0.879 -5.422 -4.938 -0.647 -4.816 -4.332 3.263 -4.707 1.414 -0.897 -4.320 -2.643 -3.244 ML 10 8 3 13 6 1 13 68 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 12 68 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 9 65 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 14 69 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 14 69 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 55 C G - - MP 15 14 6 19 6 2 18 67 87 -9.423 -9.363 -0.017 -8.139 -8.419 -8.814 -4.844 -4.836 -4.501 -0.942 -3.108 -4.891 3.427 -3.926 -4.523 -0.779 -4.805 -2.782 1.520 -4.871 -0.763 -3.329 ML 16 14 6 19 6 1 12 66 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 12 66 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 8 63 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 13 67 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 14 67 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 54 C G - - MP 21 20 6 25 6 2 17 65 85 -9.423 -9.363 -0.017 -8.139 -8.419 -8.814 -6.050 -6.082 -5.463 -2.251 -3.935 -5.676 3.836 -4.903 -5.609 -2.153 -5.661 -4.103 -0.627 -6.014 -1.725 -4.415 ML 22 20 6 25 6 1 12 64 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 12 64 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 8 61 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 13 65 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 13 65 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 53 c g - - MP 27 26 6 31 6 2 16 63 83 -9.423 -9.363 -0.017 -8.139 -8.419 -8.814 -4.514 -4.470 -4.293 -0.589 -3.034 -4.788 2.757 -3.803 -4.293 -0.414 -4.639 -2.383 2.676 -4.606 -0.678 -3.115 ML 28 26 6 31 6 1 12 62 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 11 62 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 8 60 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 13 63 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 13 63 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 52 U A - - MP 33 32 6 37 6 2 14 61 81 -9.423 -9.363 -0.017 -8.139 -8.419 -8.814 -5.030 -5.035 -4.751 -1.242 -3.455 -5.182 0.892 -4.248 -4.772 -1.091 -5.085 -3.046 3.515 -5.092 0.317 -3.529 ML 34 32 6 37 6 1 11 60 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 11 60 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 8 58 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 12 61 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 12 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 51 g c - - MP 39 38 6 43 6 2 13 59 79 -9.423 -9.363 -0.017 -8.139 -8.419 -8.814 -4.004 -2.773 -3.969 2.310 -4.895 -4.813 -0.261 -4.405 -4.073 2.863 -4.482 0.402 -0.511 -4.045 -2.224 -2.863 ML 40 38 6 43 6 1 10 59 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 10 59 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 7 57 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 11 59 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 11 59 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 50 c g - - MP 45 44 6 49 4 2 11 57 77 -7.663 -7.870 -0.032 -6.284 -3.410 -3.324 -3.469 0.407 -2.731 -4.259 2.357 -3.311 -3.445 1.329 -3.954 -1.275 1.814 -3.641 1.062 -2.351 ML 46 44 6 49 4 1 9 58 78 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 4 1 8 57 77 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 48 44 6 49 4 0 7 56 76 -4.568 -4.250 -2.265 -0.520 IL 49 49 5 49 4 1 10 59 79 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 50 50 6 50 3 1 10 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 8 - A - - - ML 51 50 6 53 3 1 9 55 74 -8.639 -0.013 -7.293 1.895 -3.707 -3.219 -3.383 D 52 50 6 53 3 0 7 54 73 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 9 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 9 - U - - - ML 54 53 3 56 2 1 8 54 73 -9.135 -0.003 -2.761 -2.549 -3.536 1.846 D 55 53 3 56 2 0 7 53 72 -8.445 -0.004 IL 56 56 3 56 2 1 8 55 74 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 12 ] - - - - - - B 57 56 3 58 114 0 7 53 72 [ BEGL 13 ] - - - - - - S 58 57 1 59 4 0 0 32 51 -0.034 -7.238 -6.646 -7.286 [ MATP 14 ] 10 28 C G - - MP 59 58 1 63 6 2 2 32 51 -9.423 -9.363 -0.017 -8.139 -8.419 -8.814 -3.874 -3.700 -3.855 0.152 -2.914 -4.581 3.068 -3.551 -3.811 0.393 -4.276 0.078 1.391 -4.070 -0.525 -2.658 ML 60 58 1 63 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 61 58 1 63 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 62 58 1 63 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 63 63 5 63 6 1 1 32 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 64 64 6 64 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 11 27 C G - - MP 65 64 6 69 6 2 2 30 49 -9.423 -9.363 -0.017 -8.139 -8.419 -8.814 -4.075 -3.945 -4.000 0.687 -2.940 -4.657 3.081 -3.626 -3.964 0.161 -4.398 -1.781 1.627 -4.240 -0.554 -2.796 ML 66 64 6 69 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 67 64 6 69 6 1 1 29 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 68 64 6 69 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 69 69 5 69 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 26 A U - - MP 71 70 6 75 4 2 2 28 47 -7.533 -8.778 -0.526 -1.747 -0.679 -2.739 -3.556 3.009 -3.969 -4.614 0.019 -3.845 -3.563 1.853 -4.090 -0.422 -0.210 -3.806 -1.769 -2.533 ML 72 70 6 75 4 1 1 28 46 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 73 70 6 75 4 1 1 27 46 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 74 70 6 75 4 0 0 25 44 -12.737 -14.007 -2.036 -0.404 IL 75 75 5 75 4 1 1 28 46 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 76 76 6 76 3 1 1 28 47 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 25 - a - - MR 77 76 6 79 5 1 1 26 45 -7.282 -0.034 -7.097 -7.310 -8.201 0.707 -0.663 -1.091 0.342 D 78 76 6 79 5 0 0 25 44 -6.889 -0.534 -4.516 -2.380 -3.941 IR 79 79 3 79 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 24 C G - - MP 80 79 3 84 4 2 2 25 44 -7.548 -7.755 -0.035 -6.169 -4.847 -4.847 -4.481 -0.973 -3.077 -4.850 3.506 -3.904 -4.515 -0.810 -4.778 -2.814 1.186 -4.865 -0.743 -3.323 ML 81 79 3 84 4 1 1 26 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 82 79 3 84 4 1 1 25 44 -5.523 -4.552 -0.793 -1.480 1.146 -1.031 -0.778 -0.486 D 83 79 3 84 4 0 0 25 44 -4.568 -4.250 -2.265 -0.520 IL 84 84 5 84 4 1 1 27 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 85 85 6 85 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - - - ML 86 85 6 88 3 1 1 22 41 -8.639 -0.013 -7.293 1.400 -2.223 -0.234 -1.751 D 87 85 6 88 3 0 0 22 40 -6.174 -1.687 -0.566 IL 88 88 3 88 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - u - - - ML 89 88 3 91 3 1 1 21 40 -8.639 -0.013 -7.293 0.652 -1.228 -1.439 0.707 D 90 88 3 91 3 0 0 20 39 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - G - - - ML 92 91 3 94 3 1 1 20 38 -8.639 -0.013 -7.293 -0.615 -1.848 1.288 -0.672 D 93 91 3 94 3 0 0 19 38 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - A - - - ML 95 94 3 97 3 1 1 19 37 -8.639 -0.013 -7.293 1.895 -3.707 -3.219 -3.383 D 96 94 3 97 3 0 0 18 37 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 18 - U - - - ML 98 97 3 100 3 1 1 17 36 -8.639 -0.013 -7.293 -2.761 -2.549 -3.536 1.846 D 99 97 3 100 3 0 0 17 36 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 19 - U - - - ML 101 100 3 103 3 1 1 16 34 -3.280 -0.167 -7.293 -1.626 -0.462 -2.395 1.465 D 102 100 3 103 3 0 0 15 33 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 17 35 -1.898 -0.534 -4.598 0.000 0.000 0.000 0.000 [ MATL 25 ] 21 - U - - - ML 104 103 3 106 3 1 1 14 33 -8.639 -0.013 -7.293 -2.761 -2.549 -3.536 1.846 D 105 103 3 106 3 0 0 15 33 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 22 - G - - - ML 107 106 3 109 3 1 1 13 31 -8.639 -0.013 -7.293 -2.902 -4.282 1.901 -3.640 D 108 106 3 109 3 0 0 13 32 -6.174 -1.687 -0.566 IL 109 109 3 109 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 23 - A - - - ML 110 109 3 112 2 1 1 1 1 * 0.000 1.895 -3.707 -3.219 -3.383 D 111 109 3 112 2 0 0 0 0 * 0.000 IL 112 112 3 112 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 28 ] - - - - - - E 113 112 3 -1 0 0 0 0 0 [ BEGR 29 ] - - - - - - S 114 57 1 115 3 0 0 34 53 -8.639 -0.013 -7.293 IL 115 115 2 115 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 29 - U - - - ML 116 115 2 118 3 1 1 34 52 -8.639 -0.013 -7.293 -2.761 -2.549 -3.536 1.846 D 117 115 2 118 3 0 0 33 52 -6.174 -1.687 -0.566 IL 118 118 3 118 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 30 - C - - - ML 119 118 3 121 3 1 1 33 51 -8.639 -0.013 -7.293 -2.475 1.711 -3.333 -1.161 D 120 118 3 121 3 0 0 32 50 -6.174 -1.687 -0.566 IL 121 121 3 121 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 31 - a - - - ML 122 121 3 124 5 1 1 31 50 -7.697 -0.026 -7.513 -7.725 -8.617 0.788 -1.186 -0.334 0.057 D 123 121 3 124 5 0 0 30 49 -4.959 -0.803 -4.221 -2.596 -2.508 IL 124 124 3 124 5 1 1 32 51 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 32 49 c g - - MP 125 124 3 129 6 2 2 30 49 -9.423 -9.363 -0.017 -8.139 -8.419 -8.814 -3.882 -3.731 -3.857 0.153 -2.886 -4.576 2.805 -3.537 -3.814 1.010 -4.280 -1.555 2.006 -4.066 -0.489 -2.650 ML 126 124 3 129 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 127 124 3 129 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 128 124 3 129 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 129 129 5 129 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 130 130 6 130 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 33 48 a u - - MP 131 130 6 135 6 2 2 28 47 -9.423 -9.363 -0.017 -8.139 -8.419 -8.814 -3.214 -2.805 -3.322 2.368 -3.203 -4.267 0.927 -3.460 -3.320 1.129 -3.855 0.421 1.944 -3.526 -0.987 -2.303 ML 132 130 6 135 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 133 130 6 135 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 134 130 6 135 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 135 135 5 135 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 136 136 6 136 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 34 47 c g - - MP 137 136 6 141 6 2 2 26 45 -9.423 -9.363 -0.017 -8.139 -8.419 -8.814 -4.515 -4.470 -4.294 -0.587 -3.034 -4.789 2.800 -3.803 -4.293 -0.411 -4.639 -2.381 2.629 -4.607 -0.677 -3.114 ML 138 136 6 141 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 139 136 6 141 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 140 136 6 141 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 141 141 5 141 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 142 142 6 142 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 35 46 G C - - MP 143 142 6 147 6 2 2 24 43 -2.900 -9.363 -0.225 -8.139 -8.419 -8.814 -4.518 -3.047 -4.502 1.604 -5.465 -4.933 -0.687 -4.942 -4.412 3.394 -4.770 -0.658 -0.960 -4.388 -2.697 -3.385 ML 144 142 6 147 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 145 142 6 147 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 146 142 6 147 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 147 147 5 147 6 1 1 23 42 -3.969 -4.231 -0.245 -5.887 -6.663 -6.323 0.000 0.000 0.000 0.000 IR 148 148 6 148 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 37 45 u a - - MP 149 148 6 153 6 2 2 22 41 -9.423 -9.363 -0.017 -8.139 -8.419 -8.814 -2.170 -0.698 -2.342 0.804 -0.325 -3.184 1.788 -2.566 -2.387 0.759 -2.948 -0.806 1.855 -2.489 0.970 -1.517 ML 150 148 6 153 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 151 148 6 153 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 152 148 6 153 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 153 153 5 153 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 154 154 6 154 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 38 44 u g - - MP 155 154 6 159 4 2 2 20 39 -7.663 -7.870 -0.032 -6.284 -3.352 -3.427 -3.390 0.006 -2.710 -4.096 1.409 -3.310 -1.109 0.088 -3.894 -1.673 2.140 -3.597 2.367 -2.423 ML 156 154 6 159 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 157 154 6 159 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 158 154 6 159 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 159 159 5 159 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 160 160 6 160 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - U - - - ML 161 160 6 163 3 1 1 17 36 -8.639 -0.013 -7.293 -2.761 -2.549 -3.536 1.846 D 162 160 6 163 3 0 0 17 35 -6.174 -1.687 -0.566 IL 163 163 3 163 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - U - - - ML 164 163 3 166 3 1 1 16 34 -8.639 -0.013 -7.293 -2.761 -2.549 -3.536 1.846 D 165 163 3 166 3 0 0 16 34 -6.174 -1.687 -0.566 IL 166 166 3 166 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - G - - - ML 167 166 3 169 3 1 1 14 33 -8.639 -0.013 -7.293 -2.902 -4.282 1.901 -3.640 D 168 166 3 169 3 0 0 15 33 -6.174 -1.687 -0.566 IL 169 169 3 169 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 42 - A - - - ML 170 169 3 172 3 1 1 13 31 -8.639 -0.013 -7.293 1.895 -3.707 -3.219 -3.383 D 171 169 3 172 3 0 0 13 32 -6.174 -1.687 -0.566 IL 172 172 3 172 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 43 - G - - - ML 173 172 3 175 2 1 1 1 1 * 0.000 -1.458 -3.319 1.761 -2.771 D 174 172 3 175 2 0 0 0 0 * 0.000 IL 175 175 3 175 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 176 175 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME salivarius-1 ACC RF03030 DESC salivarius-1 RNA LENG 56 MAXL 126 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Jul 10 17:25:26 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03030/CM NSEQ 19 EFFN 8.586182 CKSUM 1922451685 STATS LOCAL MSV -7.2687 0.71930 STATS LOCAL VITERBI -8.1806 0.71930 STATS LOCAL FORWARD -3.8796 0.71930 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.43500 1.64754 1.32349 1.19350 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 0.00000 * 1 2.30021 3.69280 0.16843 3.51102 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 2 3.98389 0.26487 3.82311 1.64911 2 C - - ( 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 3 4.96626 0.03987 4.92442 3.69484 3 C - - ( 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 4 3.75621 0.78424 3.56506 0.70955 4 u - - ( 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 5 4.24893 2.61967 4.12994 0.10891 5 U - - ( 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 6 0.97157 3.36713 0.60638 3.17717 6 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 7 2.66090 1.04895 1.70123 0.92294 7 u - - ( 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 8 0.02875 4.86884 4.48593 4.66813 8 A - - , 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 9 4.19586 3.94510 4.74892 0.04402 9 U - - , 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 10 3.15323 0.40963 2.06980 1.78868 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 11 2.29574 0.46335 2.90893 1.53431 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 12 0.29634 3.88530 1.56374 3.62780 12 A - - < 1.38629 1.38629 1.38629 1.38629 0.10866 4.72789 2.36322 1.46634 0.26236 1.09861 0.40547 13 3.83663 0.22023 3.73110 1.88301 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.01953 4.63876 4.63876 1.46634 0.26236 0.17224 1.84377 14 0.32533 3.71335 1.50029 3.49815 14 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 15 0.84447 2.69589 2.83740 0.81158 15 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 16 2.04555 3.15914 0.37039 1.98220 16 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 17 0.02875 4.86884 4.48593 4.66813 17 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 18 4.19586 3.94510 4.74892 0.04402 18 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 19 3.23161 1.75234 3.77025 0.26907 19 U - - _ 1.38629 1.38629 1.38629 1.38629 0.14455 2.07351 4.72789 0.13519 2.06789 1.09861 0.40547 20 4.19586 3.94510 4.74892 0.04402 21 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 21 4.19574 5.23898 0.02986 4.70445 22 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 22 0.02875 4.86884 4.48593 4.66813 23 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 23 1.74161 3.72625 0.26289 3.44672 24 G - - > 1.38629 1.38629 1.38629 1.38629 0.40873 4.72789 1.11884 1.46634 0.26236 1.09861 0.40547 24 0.79978 1.97310 2.38132 1.14219 25 a - - - 1.38629 1.38629 1.38629 1.38629 0.02627 4.34544 4.34544 1.46634 0.26236 0.05274 2.96865 25 2.57598 1.69381 3.66342 0.33623 26 U - - > 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 26 1.65422 3.08262 0.43046 2.18293 27 G - - > 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 27 1.94172 3.06857 0.37984 2.07082 28 G - - > 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 28 4.19586 3.94510 4.74892 0.04402 29 U - - , 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 29 3.90958 0.11946 4.44883 2.51499 30 C - - , 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 30 0.75766 2.52332 1.62307 1.37139 31 a - - , 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 31 2.92765 0.68098 2.00703 1.18427 32 C - - < 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 32 0.77167 2.98402 1.76826 1.15030 33 a - - < 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 33 3.75896 0.74640 3.56336 0.74596 34 u - - < 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 34 1.54746 3.74751 0.30661 3.58648 35 G - - < 1.38629 1.38629 1.38629 1.38629 0.37167 1.19874 4.72789 0.05766 2.88186 1.09861 0.40547 35 1.91552 1.21095 2.21111 0.80914 37 u - - < 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 36 3.70774 2.34466 2.70676 0.20723 38 U - - < 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 37 4.19586 3.94510 4.74892 0.04402 39 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 38 4.19586 3.94510 4.74892 0.04402 40 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 39 4.19574 5.23898 0.02986 4.70445 41 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 40 0.02875 4.86884 4.48593 4.66813 42 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 41 2.65798 4.38426 0.10626 4.00359 43 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 42 0.99933 3.73108 0.54955 3.48362 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 43 1.04663 1.95774 0.94308 2.13472 45 g - - > 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 44 3.80992 0.33468 3.56292 1.45274 46 C - - > 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 45 0.78763 3.72431 0.71108 3.51207 47 g - - > 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 46 1.18480 2.66111 2.80099 0.57346 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 47 1.28008 2.09717 0.63400 2.67782 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 48 1.43123 1.78631 0.68318 2.42589 50 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 49 3.42317 0.75865 3.16829 0.78303 51 c - - ) 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 50 0.20811 4.28178 1.85917 4.00292 52 A - - ) 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 51 0.74945 3.72747 0.74750 3.51425 53 g - - ) 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 52 3.96413 5.08388 0.03387 4.81341 54 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 53 1.74831 3.98204 0.24381 3.74435 55 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 54 3.75877 0.44538 3.50873 1.18361 56 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 55 0.85282 2.45180 1.84071 1.11186 57 a - - : 1.38629 1.38629 1.38629 1.38629 0.01785 4.72789 4.72789 1.46634 0.26236 1.09861 0.40547 56 4.19586 3.94510 4.74892 0.04402 58 U - - : 1.38629 1.38629 1.38629 1.38629 0.00896 4.71901 * 1.46634 0.26236 0.00000 * //