INFERNAL1/a [1.1.4 | Dec 2020] NAME salivarius-1 ACC RF03030 DESC salivarius-1 RNA STATES 177 NODES 45 CLEN 56 W 71 ALPH RNA RF no CONS yes MAP yes DATE Mon Oct 1 16:46:18 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmcalibrate --cpu 8 CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 19 EFFN 4.207275 CKSUM 1922451685 NULL 0.000 0.000 0.000 0.000 GA 55.30 TC 55.30 NC 40.50 EFP7GF -13.5523 0.71930 ECMLC 0.68028 -5.25216 3.64019 1600000 508556 0.002360 ECMGC 0.41557 -16.23205 -2.49507 1600000 120583 0.003317 ECMLI 0.63916 -4.57871 4.47168 1600000 390336 0.003074 ECMGI 0.43671 -12.57988 -0.08996 1600000 93524 0.004277 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 71 91 -7.537 -8.783 -0.050 -5.236 IL 1 1 2 1 4 1 15 73 92 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 17 73 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 58 - U - - MR 3 2 3 5 3 1 19 71 91 -8.998 -0.012 -7.315 -2.769 -2.556 -3.544 1.847 D 4 2 3 5 3 0 11 70 89 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 16 72 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 57 - a - - MR 6 5 3 8 5 1 18 70 90 -7.701 -0.025 -7.517 -7.729 -8.621 0.681 -1.112 -0.585 0.342 D 7 5 3 8 5 0 11 69 88 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 15 71 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 1 56 G C - - MP 9 8 3 13 6 2 19 69 89 -9.426 -9.365 -0.017 -8.142 -8.421 -8.816 -4.368 -2.955 -4.346 0.911 -5.403 -4.941 -0.632 -4.795 -4.321 3.242 -4.698 1.457 -0.881 -4.312 -2.627 -3.223 ML 10 8 3 13 6 1 13 68 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 12 68 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 9 65 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 14 69 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 14 69 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 55 C G - - MP 15 14 6 19 6 2 18 67 87 -9.426 -9.365 -0.017 -8.142 -8.421 -8.816 -4.859 -4.853 -4.512 -0.959 -3.115 -4.898 3.435 -3.934 -4.535 -0.796 -4.814 -2.801 1.498 -4.884 -0.771 -3.341 ML 16 14 6 19 6 1 12 66 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 12 66 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 8 63 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 13 67 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 14 67 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 54 C G - - MP 21 20 6 25 6 2 17 65 85 -9.426 -9.365 -0.017 -8.142 -8.421 -8.816 -6.059 -6.092 -5.471 -2.261 -3.941 -5.683 3.837 -4.911 -5.617 -2.164 -5.668 -4.114 -0.635 -6.023 -1.733 -4.424 ML 22 20 6 25 6 1 12 64 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 12 64 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 8 61 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 13 65 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 13 65 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 53 c g - - MP 27 26 6 31 6 2 16 63 83 -9.426 -9.365 -0.017 -8.142 -8.421 -8.816 -4.521 -4.477 -4.299 -0.596 -3.038 -4.792 2.755 -3.807 -4.298 -0.420 -4.644 -2.389 2.681 -4.612 -0.682 -3.120 ML 28 26 6 31 6 1 12 62 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 11 62 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 8 60 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 13 63 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 13 63 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 52 U A - - MP 33 32 6 37 6 2 14 61 81 -9.426 -9.365 -0.017 -8.142 -8.421 -8.816 -5.029 -5.035 -4.749 -1.241 -3.452 -5.179 0.895 -4.245 -4.770 -1.091 -5.083 -3.045 3.513 -5.091 0.335 -3.529 ML 34 32 6 37 6 1 11 60 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 11 60 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 8 58 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 12 61 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 12 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 51 g c - - MP 39 38 6 43 6 2 13 59 79 -9.426 -9.365 -0.017 -8.142 -8.421 -8.816 -4.010 -2.776 -3.975 2.308 -4.905 -4.816 -0.267 -4.412 -4.079 2.870 -4.487 0.386 -0.516 -4.050 -2.231 -2.869 ML 40 38 6 43 6 1 10 59 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 10 59 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 7 57 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 11 59 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 11 59 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 50 c g - - MP 45 44 6 49 4 2 11 57 77 -7.668 -7.875 -0.032 -6.289 -3.407 -3.322 -3.467 0.406 -2.732 -4.256 2.342 -3.312 -3.443 1.344 -3.952 -1.275 1.805 -3.638 1.097 -2.351 ML 46 44 6 49 4 1 9 58 78 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 4 1 8 58 77 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 48 44 6 49 4 0 7 56 76 -4.568 -4.250 -2.265 -0.520 IL 49 49 5 49 4 1 10 59 79 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 50 50 6 50 3 1 10 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 8 - A - - - ML 51 50 6 53 3 1 9 55 74 -8.643 -0.013 -7.297 1.896 -3.715 -3.227 -3.392 D 52 50 6 53 3 0 7 54 73 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 9 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 9 - U - - - ML 54 53 3 56 2 1 8 54 73 -9.140 -0.003 -2.769 -2.556 -3.544 1.847 D 55 53 3 56 2 0 7 53 72 -8.445 -0.004 IL 56 56 3 56 2 1 8 55 74 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 12 ] - - - - - - B 57 56 3 58 114 0 7 53 72 [ BEGL 13 ] - - - - - - S 58 57 1 59 4 0 0 32 51 -0.034 -7.241 -6.649 -7.289 [ MATP 14 ] 10 28 C G - - MP 59 58 1 63 6 2 2 32 51 -9.426 -9.365 -0.017 -8.142 -8.421 -8.816 -3.882 -3.707 -3.861 0.146 -2.919 -4.586 3.073 -3.556 -3.817 0.387 -4.282 0.093 1.380 -4.078 -0.530 -2.664 ML 60 58 1 63 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 61 58 1 63 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 62 58 1 63 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 63 63 5 63 6 1 1 32 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 64 64 6 64 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 11 27 C G - - MP 65 64 6 69 6 2 2 30 49 -9.426 -9.365 -0.017 -8.142 -8.421 -8.816 -4.089 -3.959 -4.010 0.669 -2.945 -4.665 3.088 -3.633 -3.975 0.149 -4.407 -1.793 1.628 -4.252 -0.559 -2.805 ML 66 64 6 69 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 67 64 6 69 6 1 1 29 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 68 64 6 69 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 69 69 5 69 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 26 A U - - MP 71 70 6 75 4 2 2 28 47 -7.537 -8.783 -0.521 -1.759 -0.624 -2.744 -3.558 3.015 -3.970 -4.621 0.009 -3.846 -3.563 1.835 -4.091 -0.426 -0.218 -3.813 -1.775 -2.536 ML 72 70 6 75 4 1 1 28 46 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 73 70 6 75 4 1 1 27 46 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 74 70 6 75 4 0 0 25 44 -12.737 -14.007 -2.036 -0.404 IL 75 75 5 75 4 1 1 28 46 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 76 76 6 76 3 1 1 28 47 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 25 - a - - MR 77 76 6 79 5 1 1 26 45 -7.290 -0.034 -7.106 -7.318 -8.209 0.675 -0.665 -1.094 0.384 D 78 76 6 79 5 0 0 25 44 -6.884 -0.543 -4.510 -2.353 -3.935 IR 79 79 3 79 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 24 C G - - MP 80 79 3 84 4 2 2 25 44 -7.551 -7.758 -0.035 -6.172 -4.861 -4.862 -4.492 -0.989 -3.084 -4.858 3.512 -3.914 -4.526 -0.826 -4.787 -2.831 1.165 -4.878 -0.752 -3.335 ML 81 79 3 84 4 1 1 26 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 82 79 3 84 4 1 1 25 44 -5.532 -4.561 -0.786 -1.489 1.153 -1.039 -0.785 -0.494 D 83 79 3 84 4 0 0 25 44 -4.568 -4.250 -2.265 -0.520 IL 84 84 5 84 4 1 1 28 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 85 85 6 85 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - - - ML 86 85 6 88 3 1 1 22 41 -8.643 -0.013 -7.297 1.385 -2.218 -0.193 -1.743 D 87 85 6 88 3 0 0 22 40 -6.174 -1.687 -0.566 IL 88 88 3 88 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - u - - - ML 89 88 3 91 3 1 1 21 40 -8.643 -0.013 -7.297 0.672 -1.233 -1.439 0.690 D 90 88 3 91 3 0 0 20 39 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - G - - - ML 92 91 3 94 3 1 1 20 38 -8.643 -0.013 -7.297 -0.609 -1.819 1.267 -0.613 D 93 91 3 94 3 0 0 19 38 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - A - - - ML 95 94 3 97 3 1 1 19 37 -8.643 -0.013 -7.297 1.896 -3.715 -3.227 -3.392 D 96 94 3 97 3 0 0 18 37 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 18 - U - - - ML 98 97 3 100 3 1 1 17 36 -8.643 -0.013 -7.297 -2.769 -2.556 -3.544 1.847 D 99 97 3 100 3 0 0 17 36 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 19 - U - - - ML 101 100 3 103 3 1 1 16 34 -3.177 -0.179 -7.297 -1.637 -0.478 -2.406 1.471 D 102 100 3 103 3 0 0 15 33 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 17 35 -1.929 -0.521 -4.629 0.000 0.000 0.000 0.000 [ MATL 25 ] 21 - U - - - ML 104 103 3 106 3 1 1 14 33 -8.643 -0.013 -7.297 -2.769 -2.556 -3.544 1.847 D 105 103 3 106 3 0 0 15 33 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 22 - G - - - ML 107 106 3 109 3 1 1 13 31 -8.643 -0.013 -7.297 -2.910 -4.290 1.902 -3.648 D 108 106 3 109 3 0 0 13 32 -6.174 -1.687 -0.566 IL 109 109 3 109 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 23 - A - - - ML 110 109 3 112 2 1 1 1 1 * 0.000 1.896 -3.715 -3.227 -3.392 D 111 109 3 112 2 0 0 0 0 * 0.000 IL 112 112 3 112 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 28 ] - - - - - - E 113 112 3 -1 0 0 0 0 0 [ BEGR 29 ] - - - - - - S 114 57 1 115 3 0 0 34 53 -8.643 -0.013 -7.297 IL 115 115 2 115 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 29 - U - - - ML 116 115 2 118 3 1 1 34 52 -8.643 -0.013 -7.297 -2.769 -2.556 -3.544 1.847 D 117 115 2 118 3 0 0 33 52 -6.174 -1.687 -0.566 IL 118 118 3 118 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 30 - C - - - ML 119 118 3 121 3 1 1 33 51 -8.643 -0.013 -7.297 -2.460 1.706 -3.320 -1.133 D 120 118 3 121 3 0 0 32 50 -6.174 -1.687 -0.566 IL 121 121 3 121 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 31 - a - - - ML 122 121 3 124 5 1 1 31 50 -7.701 -0.025 -7.517 -7.729 -8.621 0.780 -1.179 -0.353 0.081 D 123 121 3 124 5 0 0 30 49 -4.959 -0.803 -4.221 -2.596 -2.508 IL 124 124 3 124 5 1 1 32 51 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 32 49 c g - - MP 125 124 3 129 6 2 2 30 49 -9.426 -9.365 -0.017 -8.142 -8.421 -8.816 -3.877 -3.726 -3.854 0.157 -2.886 -4.575 2.791 -3.536 -3.811 1.018 -4.278 -1.551 2.023 -4.062 -0.489 -2.647 ML 126 124 3 129 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 127 124 3 129 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 128 124 3 129 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 129 129 5 129 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 130 130 6 130 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 33 48 a u - - MP 131 130 6 135 6 2 2 28 47 -9.426 -9.365 -0.017 -8.142 -8.421 -8.816 -3.219 -2.807 -3.327 2.374 -3.212 -4.273 0.917 -3.466 -3.325 1.127 -3.860 0.434 1.938 -3.532 -0.995 -2.308 ML 132 130 6 135 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 133 130 6 135 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 134 130 6 135 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 135 135 5 135 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 136 136 6 136 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 34 47 c g - - MP 137 136 6 141 6 2 2 26 45 -9.426 -9.365 -0.017 -8.142 -8.421 -8.816 -4.522 -4.477 -4.300 -0.593 -3.038 -4.794 2.805 -3.807 -4.299 -0.417 -4.644 -2.387 2.625 -4.613 -0.681 -3.120 ML 138 136 6 141 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 139 136 6 141 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 140 136 6 141 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 141 141 5 141 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 142 142 6 142 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 35 46 G C - - MP 143 142 6 147 6 2 2 24 43 -2.889 -9.365 -0.226 -8.142 -8.421 -8.816 -4.529 -3.054 -4.514 1.594 -5.479 -4.937 -0.698 -4.954 -4.420 3.399 -4.777 -0.665 -0.971 -4.395 -2.709 -3.397 ML 144 142 6 147 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 145 142 6 147 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 146 142 6 147 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 147 147 5 147 6 1 1 23 42 -3.977 -4.239 -0.244 -5.895 -6.671 -6.331 0.000 0.000 0.000 0.000 IR 148 148 6 148 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 37 45 u a - - MP 149 148 6 153 6 2 2 22 41 -9.426 -9.365 -0.017 -8.142 -8.421 -8.816 -2.167 -0.681 -2.339 0.803 -0.246 -3.181 1.779 -2.564 -2.384 0.757 -2.945 -0.807 1.845 -2.486 0.965 -1.516 ML 150 148 6 153 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 151 148 6 153 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 152 148 6 153 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 153 153 5 153 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 154 154 6 154 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 38 44 u g - - MP 155 154 6 159 4 2 2 20 39 -7.668 -7.875 -0.032 -6.289 -3.351 -3.425 -3.390 0.011 -2.711 -4.098 1.410 -3.310 -1.140 0.093 -3.894 -1.670 2.169 -3.596 2.342 -2.422 ML 156 154 6 159 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 157 154 6 159 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 158 154 6 159 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 159 159 5 159 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 160 160 6 160 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - U - - - ML 161 160 6 163 3 1 1 17 36 -8.643 -0.013 -7.297 -2.769 -2.556 -3.544 1.847 D 162 160 6 163 3 0 0 17 35 -6.174 -1.687 -0.566 IL 163 163 3 163 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - U - - - ML 164 163 3 166 3 1 1 16 34 -8.643 -0.013 -7.297 -2.769 -2.556 -3.544 1.847 D 165 163 3 166 3 0 0 16 34 -6.174 -1.687 -0.566 IL 166 166 3 166 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - G - - - ML 167 166 3 169 3 1 1 14 33 -8.643 -0.013 -7.297 -2.910 -4.290 1.902 -3.648 D 168 166 3 169 3 0 0 15 33 -6.174 -1.687 -0.566 IL 169 169 3 169 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 42 - A - - - ML 170 169 3 172 3 1 1 13 31 -8.643 -0.013 -7.297 1.896 -3.715 -3.227 -3.392 D 171 169 3 172 3 0 0 13 32 -6.174 -1.687 -0.566 IL 172 172 3 172 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 43 - G - - - ML 173 172 3 175 2 1 1 1 1 * 0.000 -1.426 -3.301 1.756 -2.754 D 174 172 3 175 2 0 0 0 0 * 0.000 IL 175 175 3 175 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 176 175 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME salivarius-1 ACC RF03030 DESC salivarius-1 RNA LENG 56 MAXL 126 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Oct 1 16:46:18 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED NSEQ 19 EFFN 8.614014 CKSUM 1922451685 STATS LOCAL MSV -7.2113 0.71930 STATS LOCAL VITERBI -8.1804 0.71930 STATS LOCAL FORWARD -3.8795 0.71930 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.43464 1.64837 1.32451 1.19236 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 0.00000 * 1 2.26748 3.67990 0.17330 3.49611 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 2 3.99379 0.26000 3.83436 1.66650 2 C - - ( 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 3 4.97052 0.03969 4.92906 3.69938 3 C - - ( 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 4 3.76085 0.78641 3.57000 0.70704 4 u - - ( 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 5 4.24460 2.61349 4.12538 0.10957 5 U - - ( 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 6 0.97431 3.36912 0.60420 3.17934 6 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 7 2.66441 1.06264 1.68964 0.91571 7 u - - ( 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 8 0.02863 4.87288 4.48982 4.67200 8 A - - , 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 9 4.19989 3.94878 4.75304 0.04385 9 U - - , 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 10 3.16348 0.40660 2.06529 1.80161 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 11 2.31267 0.45971 2.91925 1.53450 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 12 0.29082 3.90154 1.58018 3.64190 12 A - - < 1.38629 1.38629 1.38629 1.38629 0.10983 4.73035 2.35191 1.46634 0.26236 1.09861 0.40547 13 3.84366 0.21708 3.73930 1.89747 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.01950 4.64003 4.64003 1.46634 0.26236 0.17007 1.85536 14 0.33544 3.71492 1.46828 3.49658 14 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 15 0.82867 2.69936 2.83818 0.82647 15 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 16 2.04690 3.13978 0.38193 1.93080 16 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 17 0.02863 4.87288 4.48982 4.67200 17 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 18 4.19989 3.94878 4.75304 0.04385 18 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 19 3.23924 1.76569 3.77705 0.26547 19 U - - _ 1.38629 1.38629 1.38629 1.38629 0.15467 2.00634 4.73035 0.12642 2.13069 1.09861 0.40547 20 4.19989 3.94878 4.75304 0.04385 21 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 21 4.19908 5.24279 0.02976 4.70776 22 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 22 0.02863 4.87288 4.48982 4.67200 23 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 23 1.74869 3.73266 0.26084 3.45249 24 G - - > 1.38629 1.38629 1.38629 1.38629 0.40399 4.73035 1.12847 1.46634 0.26236 1.09861 0.40547 24 0.82623 1.97703 2.38032 1.10473 25 a - - - 1.38629 1.38629 1.38629 1.38629 0.02609 4.35245 4.35245 1.46634 0.26236 0.05311 2.96184 25 2.54966 1.71196 3.67907 0.33389 26 U - - > 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 26 1.65372 3.09279 0.42713 2.19903 27 G - - > 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 27 1.95560 3.07936 0.37711 2.06598 28 G - - > 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 28 4.19989 3.94878 4.75304 0.04385 29 U - - , 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 29 3.89520 0.12261 4.43918 2.48593 30 C - - , 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 30 0.76419 2.51683 1.63907 1.34933 31 a - - , 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 31 2.92307 0.69244 1.99965 1.16958 32 C - - < 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 32 0.76792 2.99621 1.76364 1.15636 33 a - - < 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 33 3.76282 0.74197 3.56738 0.74997 34 c - - < 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 34 1.55651 3.75615 0.30339 3.59550 35 G - - < 1.38629 1.38629 1.38629 1.38629 0.37383 1.19375 4.73035 0.05724 2.88898 1.09861 0.40547 35 1.91420 1.19949 2.22010 0.81510 37 u - - < 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 36 3.70054 2.34373 2.71848 0.20660 38 U - - < 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 37 4.19989 3.94878 4.75304 0.04385 39 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 38 4.19989 3.94878 4.75304 0.04385 40 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 39 4.19908 5.24279 0.02976 4.70776 41 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 40 0.02863 4.87288 4.48982 4.67200 42 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 41 2.62719 4.36663 0.10926 3.98835 43 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 42 0.97731 3.72301 0.56457 3.47653 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 43 1.03744 1.95625 0.94936 2.14333 45 g - - > 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 44 3.81843 0.33118 3.57183 1.46164 46 C - - > 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 45 0.79169 3.72829 0.70690 3.51593 47 g - - > 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 46 1.19066 2.66565 2.81296 0.56846 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 47 1.26408 2.08957 0.64486 2.67332 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 48 1.43993 1.77334 0.68277 2.42953 50 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 49 3.42539 0.75332 3.17035 0.78818 51 c - - ) 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 50 0.21086 4.27714 1.84586 3.99880 52 A - - ) 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 51 0.74670 3.73235 0.74971 3.51891 53 a - - ) 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 52 3.96851 5.08849 0.03371 4.81808 54 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 53 1.76705 3.99303 0.23914 3.75432 55 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 54 3.74467 0.46289 3.49472 1.15032 56 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 55 0.84220 2.45714 1.84721 1.12122 57 a - - : 1.38629 1.38629 1.38629 1.38629 0.01780 4.73035 4.73035 1.46634 0.26236 1.09861 0.40547 56 4.19989 3.94878 4.75304 0.04385 58 U - - : 1.38629 1.38629 1.38629 1.38629 0.00894 4.72149 * 1.46634 0.26236 0.00000 * //