INFERNAL1/a [1.1.4 | Dec 2020] NAME salivarius-1 ACC RF03030 DESC salivarius-1 RNA STATES 177 NODES 45 CLEN 56 W 71 ALPH RNA RF no CONS yes MAP yes DATE Mon Oct 13 11:37:16 2025 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15.1_nancynan/3D/RF03030/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 20 EFFN 4.165039 CKSUM 639589343 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 55.10 NC 37.20 EFP7GF -13.3185 0.71931 ECMLC 0.68161 -5.22214 3.64265 1600000 505047 0.002376 ECMGC 0.41846 -16.25614 -2.48058 1600000 127508 0.003137 ECMLI 0.63580 -4.62725 4.46135 1600000 387937 0.003093 ECMGI 0.43722 -12.64267 -0.13641 1600000 94798 0.004219 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 71 91 -7.527 -8.773 -0.088 -4.280 IL 1 1 2 1 4 1 15 73 92 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 16 73 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 58 - U - - MR 3 2 3 5 3 1 18 71 91 -8.953 -0.012 -7.271 -2.684 -2.484 -3.457 1.838 D 4 2 3 5 3 0 11 70 89 -6.778 -1.956 -0.448 IR 5 5 3 5 3 1 16 72 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 57 - a - - MR 6 5 3 8 5 1 18 70 90 -7.659 -0.026 -7.474 -7.687 -8.578 0.666 -1.088 -0.574 0.346 D 7 5 3 8 5 0 10 69 88 -5.582 -0.937 -3.208 -4.639 -1.697 IR 8 8 3 8 5 1 15 71 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 1 56 G C - - MP 9 8 3 13 6 2 19 69 89 -9.401 -9.341 -0.017 -8.117 -8.397 -8.792 -4.347 -2.935 -4.326 0.897 -5.360 -4.904 -0.599 -4.773 -4.295 3.256 -4.671 1.396 -0.850 -4.283 -2.594 -3.206 ML 10 8 3 13 6 1 13 68 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 12 68 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 9 66 86 -9.400 -8.098 -1.820 -4.578 -4.595 -0.670 IL 13 13 5 13 6 1 14 69 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 14 69 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 55 C G - - MP 15 14 6 19 6 2 18 67 87 -9.420 -9.360 -0.017 -8.136 -8.416 -8.811 -4.846 -4.840 -4.501 -0.947 -3.107 -4.888 3.434 -3.925 -4.524 -0.784 -4.804 -2.788 1.494 -4.873 -0.762 -3.330 ML 16 14 6 19 6 1 12 66 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 12 66 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 8 63 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 13 67 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 14 67 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 54 C G - - MP 21 20 6 25 6 2 17 65 85 -9.420 -9.360 -0.017 -8.136 -8.416 -8.811 -6.037 -6.068 -5.453 -2.237 -3.926 -5.668 3.835 -4.893 -5.598 -2.139 -5.652 -4.088 -0.616 -6.002 -1.716 -4.404 ML 22 20 6 25 6 1 12 64 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 12 64 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 8 61 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 13 65 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 13 65 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 53 c g - - MP 27 26 6 31 6 2 16 63 83 -9.420 -9.360 -0.017 -8.136 -8.416 -8.811 -4.506 -4.462 -4.286 -0.584 -3.029 -4.781 2.731 -3.797 -4.286 -0.408 -4.632 -2.377 2.700 -4.599 -0.674 -3.109 ML 28 26 6 31 6 1 12 62 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 11 62 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 8 60 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 13 63 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 13 63 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 52 U A - - MP 33 32 6 37 6 2 14 61 81 -9.420 -9.360 -0.017 -8.136 -8.416 -8.811 -5.030 -5.035 -4.752 -1.242 -3.458 -5.184 0.889 -4.250 -4.773 -1.091 -5.087 -3.045 3.518 -5.093 0.295 -3.529 ML 34 32 6 37 6 1 11 60 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 11 60 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 8 58 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 12 61 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 12 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 51 g c - - MP 39 38 6 43 6 2 12 59 79 -9.420 -9.360 -0.017 -8.136 -8.416 -8.811 -3.975 -2.756 -3.940 2.285 -4.858 -4.791 -0.237 -4.378 -4.052 2.828 -4.462 0.622 -0.486 -4.018 -2.197 -2.838 ML 40 38 6 43 6 1 10 59 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 10 59 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 7 57 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 11 59 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 11 59 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 50 c g - - MP 45 44 6 49 4 2 11 57 77 -7.657 -7.864 -0.032 -6.278 -3.419 -3.332 -3.477 0.405 -2.732 -4.266 2.388 -3.314 -3.451 1.317 -3.960 -1.278 1.800 -3.650 1.027 -2.356 ML 46 44 6 49 4 1 9 58 78 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 4 1 8 57 77 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 48 44 6 49 4 0 7 56 76 -4.568 -4.250 -2.265 -0.520 IL 49 49 5 49 4 1 10 59 79 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 50 50 6 50 3 1 10 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 8 - A - - - ML 51 50 6 53 3 1 9 55 74 -8.633 -0.013 -7.287 1.895 -3.697 -3.209 -3.371 D 52 50 6 53 3 0 7 54 73 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 9 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 9 - U - - - ML 54 53 3 56 2 1 8 54 73 -9.129 -0.003 -2.751 -2.540 -3.525 1.845 D 55 53 3 56 2 0 7 53 72 -8.445 -0.004 IL 56 56 3 56 2 1 8 55 74 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 12 ] - - - - - - B 57 56 3 58 114 0 7 53 72 [ BEGL 13 ] - - - - - - S 58 57 1 59 4 0 0 32 51 -0.034 -7.235 -6.642 -7.282 [ MATP 14 ] 10 28 C G - - MP 59 58 1 63 6 2 2 32 51 -9.420 -9.360 -0.017 -8.136 -8.416 -8.811 -3.876 -3.702 -3.855 0.151 -2.913 -4.580 3.073 -3.551 -3.812 0.392 -4.277 0.063 1.383 -4.071 -0.524 -2.658 ML 60 58 1 63 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 61 58 1 63 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 62 58 1 63 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 63 63 5 63 6 1 1 32 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 64 64 6 64 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 11 27 C G - - MP 65 64 6 69 6 2 2 30 49 -9.420 -9.360 -0.017 -8.136 -8.416 -8.811 -4.084 -3.955 -4.005 0.670 -2.940 -4.659 3.092 -3.628 -3.970 0.152 -4.402 -1.791 1.614 -4.247 -0.554 -2.801 ML 66 64 6 69 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 67 64 6 69 6 1 1 29 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 68 64 6 69 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 69 69 5 69 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 26 A U - - MP 71 70 6 75 4 2 2 28 47 -7.527 -8.773 -0.510 -1.787 -0.712 -2.745 -3.563 3.024 -3.977 -4.628 0.012 -3.849 -3.568 1.831 -4.096 -0.424 -0.217 -3.819 -1.777 -2.538 ML 72 70 6 75 4 1 1 28 46 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 73 70 6 75 4 1 1 27 46 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 74 70 6 75 4 0 0 25 44 -12.737 -14.007 -2.036 -0.404 IL 75 75 5 75 4 1 1 28 46 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 76 76 6 76 3 1 1 28 47 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 25 - a - - MR 77 76 6 79 5 1 1 26 45 -7.291 -0.034 -7.107 -7.319 -8.211 0.753 -0.693 -1.102 0.299 D 78 76 6 79 5 0 0 25 44 -6.857 -0.541 -4.483 -2.375 -3.909 IR 79 79 3 79 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 24 C G - - MP 80 79 3 84 4 2 2 25 44 -7.544 -7.751 -0.035 -6.165 -4.852 -4.852 -4.484 -0.980 -3.079 -4.852 3.510 -3.908 -4.519 -0.816 -4.781 -2.821 1.166 -4.870 -0.746 -3.328 ML 81 79 3 84 4 1 1 26 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 82 79 3 84 4 1 1 25 44 -5.512 -4.540 -0.802 -1.468 1.139 -1.022 -0.768 -0.477 D 83 79 3 84 4 0 0 25 44 -4.568 -4.250 -2.265 -0.520 IL 84 84 5 84 4 1 1 27 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 85 85 6 85 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - - - ML 86 85 6 88 3 1 1 22 41 -8.633 -0.013 -7.287 1.412 -2.226 -0.271 -1.757 D 87 85 6 88 3 0 0 22 40 -6.174 -1.687 -0.566 IL 88 88 3 88 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - u - - - ML 89 88 3 91 3 1 1 21 40 -8.633 -0.013 -7.287 0.613 -1.222 -1.441 0.743 D 90 88 3 91 3 0 0 20 39 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - G - - - ML 92 91 3 94 3 1 1 20 38 -8.633 -0.013 -7.287 -0.635 -1.871 1.305 -0.709 D 93 91 3 94 3 0 0 19 38 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - A - - - ML 95 94 3 97 3 1 1 19 37 -8.633 -0.013 -7.287 1.895 -3.697 -3.209 -3.371 D 96 94 3 97 3 0 0 18 37 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 18 - U - - - ML 98 97 3 100 3 1 1 17 36 -8.633 -0.013 -7.287 -2.751 -2.540 -3.525 1.845 D 99 97 3 100 3 0 0 17 36 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 19 - U - - - ML 101 100 3 103 3 1 1 16 34 -3.335 -0.161 -7.287 -1.633 -0.495 -2.400 1.474 D 102 100 3 103 3 0 0 15 33 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 17 35 -1.882 -0.542 -4.582 0.000 0.000 0.000 0.000 [ MATL 25 ] 21 - U - - - ML 104 103 3 106 3 1 1 14 33 -8.633 -0.013 -7.287 -2.751 -2.540 -3.525 1.845 D 105 103 3 106 3 0 0 15 33 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 22 - G - - - ML 107 106 3 109 3 1 1 13 31 -8.633 -0.013 -7.287 -2.893 -4.271 1.900 -3.630 D 108 106 3 109 3 0 0 13 32 -6.174 -1.687 -0.566 IL 109 109 3 109 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 23 - A - - - ML 110 109 3 112 2 1 1 1 1 * 0.000 1.895 -3.697 -3.209 -3.371 D 111 109 3 112 2 0 0 0 0 * 0.000 IL 112 112 3 112 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 28 ] - - - - - - E 113 112 3 -1 0 0 0 0 0 [ BEGR 29 ] - - - - - - S 114 57 1 115 3 0 0 34 53 -8.633 -0.013 -7.287 IL 115 115 2 115 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 29 - U - - - ML 116 115 2 118 3 1 1 34 52 -8.633 -0.013 -7.287 -2.751 -2.540 -3.525 1.845 D 117 115 2 118 3 0 0 33 52 -6.174 -1.687 -0.566 IL 118 118 3 118 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 30 - C - - - ML 119 118 3 121 3 1 1 33 51 -8.633 -0.013 -7.287 -2.480 1.713 -3.336 -1.177 D 120 118 3 121 3 0 0 32 50 -6.174 -1.687 -0.566 IL 121 121 3 121 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 31 - a - - - ML 122 121 3 124 5 1 1 31 50 -7.692 -0.026 -7.508 -7.720 -8.611 0.821 -1.197 -0.361 0.027 D 123 121 3 124 5 0 0 30 49 -4.959 -0.803 -4.221 -2.596 -2.508 IL 124 124 3 124 5 1 1 32 51 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 32 49 c g - - MP 125 124 3 129 6 2 2 30 49 -9.420 -9.360 -0.017 -8.136 -8.416 -8.811 -3.890 -3.738 -3.862 0.146 -2.886 -4.578 2.825 -3.539 -3.820 1.000 -4.283 -1.563 1.979 -4.072 -0.489 -2.655 ML 126 124 3 129 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 127 124 3 129 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 128 124 3 129 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 129 129 5 129 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 130 130 6 130 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 33 48 a u - - MP 131 130 6 135 6 2 2 28 47 -9.420 -9.360 -0.017 -8.136 -8.416 -8.811 -3.219 -2.801 -3.326 2.394 -3.217 -4.273 0.914 -3.467 -3.325 1.139 -3.859 0.416 1.912 -3.532 -0.999 -2.306 ML 132 130 6 135 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 133 130 6 135 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 134 130 6 135 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 135 135 5 135 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 136 136 6 136 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 34 47 c g - - MP 137 136 6 141 6 2 2 26 45 -9.420 -9.360 -0.017 -8.136 -8.416 -8.811 -4.509 -4.463 -4.288 -0.580 -3.029 -4.784 2.826 -3.797 -4.287 -0.403 -4.633 -2.373 2.595 -4.601 -0.672 -3.108 ML 138 136 6 141 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 139 136 6 141 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 140 136 6 141 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 141 141 5 141 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 142 142 6 142 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 35 46 G C - - MP 143 142 6 147 6 2 2 24 43 -2.945 -9.360 -0.218 -8.136 -8.416 -8.811 -4.529 -3.052 -4.515 1.576 -5.476 -4.932 -0.696 -4.954 -4.417 3.404 -4.774 -0.664 -0.969 -4.393 -2.706 -3.398 ML 144 142 6 147 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 145 142 6 147 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 146 142 6 147 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 147 147 5 147 6 1 1 23 42 -3.939 -4.201 -0.251 -5.857 -6.633 -6.293 0.000 0.000 0.000 0.000 IR 148 148 6 148 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 37 45 u a - - MP 149 148 6 153 6 2 2 22 41 -9.420 -9.360 -0.017 -8.136 -8.416 -8.811 -2.169 -0.713 -2.341 0.805 -0.365 -3.183 1.781 -2.565 -2.386 0.760 -2.947 -0.806 1.837 -2.489 1.033 -1.517 ML 150 148 6 153 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 151 148 6 153 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 152 148 6 153 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 153 153 5 153 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 154 154 6 154 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 38 44 u g - - MP 155 154 6 159 4 2 2 20 39 -7.657 -7.864 -0.032 -6.278 -3.377 -3.450 -3.411 -0.011 -2.718 -4.112 1.408 -3.322 -1.153 0.074 -3.912 -1.692 2.114 -3.620 2.403 -2.440 ML 156 154 6 159 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 157 154 6 159 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 158 154 6 159 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 159 159 5 159 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 160 160 6 160 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - U - - - ML 161 160 6 163 3 1 1 17 36 -8.633 -0.013 -7.287 -2.751 -2.540 -3.525 1.845 D 162 160 6 163 3 0 0 17 35 -6.174 -1.687 -0.566 IL 163 163 3 163 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - U - - - ML 164 163 3 166 3 1 1 16 34 -8.633 -0.013 -7.287 -2.751 -2.540 -3.525 1.845 D 165 163 3 166 3 0 0 16 34 -6.174 -1.687 -0.566 IL 166 166 3 166 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - G - - - ML 167 166 3 169 3 1 1 14 33 -8.633 -0.013 -7.287 -2.893 -4.271 1.900 -3.630 D 168 166 3 169 3 0 0 15 33 -6.174 -1.687 -0.566 IL 169 169 3 169 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 42 - A - - - ML 170 169 3 172 3 1 1 13 31 -8.633 -0.013 -7.287 1.895 -3.697 -3.209 -3.371 D 171 169 3 172 3 0 0 13 32 -6.174 -1.687 -0.566 IL 172 172 3 172 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 43 - G - - - ML 173 172 3 175 2 1 1 1 1 * 0.000 -1.477 -3.327 1.764 -2.778 D 174 172 3 175 2 0 0 0 0 * 0.000 IL 175 175 3 175 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 176 175 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME salivarius-1 ACC RF03030 DESC salivarius-1 RNA LENG 56 MAXL 126 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Oct 13 11:37:16 2025 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15.1_nancynan/3D/RF03030/CM NSEQ 20 EFFN 8.442383 CKSUM 639589343 STATS LOCAL MSV -7.2449 0.71931 STATS LOCAL VITERBI -8.1776 0.71931 STATS LOCAL FORWARD -3.8724 0.71931 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.43626 1.64703 1.32075 1.19525 1.38629 1.38629 1.38629 1.38629 0.04802 4.71404 3.27229 1.46634 0.26236 0.00000 * 1 2.27201 3.62383 0.17652 3.44110 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01864 4.68466 4.68466 1.46634 0.26236 0.38732 1.13592 2 3.94792 0.26228 3.79713 1.66614 2 C - - ( 1.38629 1.38629 1.38629 1.38629 0.01810 4.71404 4.71404 1.46634 0.26236 1.09861 0.40547 3 4.89931 0.04167 4.87124 3.66143 3 C - - ( 1.38629 1.38629 1.38629 1.38629 0.01810 4.71404 4.71404 1.46634 0.26236 1.09861 0.40547 4 3.72778 0.80717 3.54057 0.69148 4 U - - ( 1.38629 1.38629 1.38629 1.38629 0.01810 4.71404 4.71404 1.46634 0.26236 1.09861 0.40547 5 4.22760 2.61760 4.11299 0.10973 5 U - - ( 1.38629 1.38629 1.38629 1.38629 0.01810 4.71404 4.71404 1.46634 0.26236 1.09861 0.40547 6 0.99426 3.33833 0.59497 3.14823 6 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01810 4.71404 4.71404 1.46634 0.26236 1.09861 0.40547 7 2.65065 1.02084 1.71021 0.94604 7 u - - ( 1.38629 1.38629 1.38629 1.38629 0.01810 4.71404 4.71404 1.46634 0.26236 1.09861 0.40547 8 0.02935 4.84778 4.46562 4.64791 8 A - - , 1.38629 1.38629 1.38629 1.38629 0.01810 4.71404 4.71404 1.46634 0.26236 1.09861 0.40547 9 4.17483 3.92590 4.72747 0.04495 9 U - - , 1.38629 1.38629 1.38629 1.38629 0.01810 4.71404 4.71404 1.46634 0.26236 1.09861 0.40547 10 3.13988 0.40877 2.07536 1.79134 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.01810 4.71404 4.71404 1.46634 0.26236 1.09861 0.40547 11 2.30986 0.45797 2.90726 1.54396 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.01810 4.71404 4.71404 1.46634 0.26236 1.09861 0.40547 12 0.29387 3.86729 1.57656 3.61089 12 A - - < 1.38629 1.38629 1.38629 1.38629 0.10723 4.71404 2.37822 1.46634 0.26236 1.09861 0.40547 13 3.82561 0.21899 3.71950 1.89300 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.01977 4.62658 4.62658 1.46634 0.26236 0.17686 1.81953 14 0.31775 3.69514 1.52987 3.48007 14 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01810 4.71404 4.71404 1.46634 0.26236 1.09861 0.40547 15 0.87894 2.68150 2.82886 0.78256 15 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01810 4.71404 4.71404 1.46634 0.26236 1.09861 0.40547 16 2.05945 3.16651 0.36166 2.01135 16 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01810 4.71404 4.71404 1.46634 0.26236 1.09861 0.40547 17 0.02935 4.84778 4.46562 4.64791 17 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01810 4.71404 4.71404 1.46634 0.26236 1.09861 0.40547 18 4.17483 3.92590 4.72747 0.04495 18 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01810 4.71404 4.71404 1.46634 0.26236 1.09861 0.40547 19 3.22285 1.78204 3.75966 0.26322 19 U - - _ 1.38629 1.38629 1.38629 1.38629 0.13946 2.11031 4.71404 0.14194 2.02248 1.09861 0.40547 20 4.17483 3.92590 4.72747 0.04495 21 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01810 4.71404 4.71404 1.46634 0.26236 1.09861 0.40547 21 4.17828 5.21910 0.03041 4.68715 22 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01810 4.71404 4.71404 1.46634 0.26236 1.09861 0.40547 22 0.02935 4.84778 4.46562 4.64791 23 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01810 4.71404 4.71404 1.46634 0.26236 1.09861 0.40547 23 1.75899 3.71718 0.25962 3.43789 24 G - - > 1.38629 1.38629 1.38629 1.38629 0.39405 4.71404 1.14976 1.46634 0.26236 1.09861 0.40547 24 0.76284 2.00092 2.39462 1.18012 25 a - - - 1.38629 1.38629 1.38629 1.38629 0.02625 4.34624 4.34624 1.46634 0.26236 0.05509 2.92622 25 2.59134 1.71013 3.64563 0.33110 26 U - - > 1.38629 1.38629 1.38629 1.38629 0.01810 4.71404 4.71404 1.46634 0.26236 1.09861 0.40547 26 1.66595 3.08076 0.42506 2.19525 27 G - - > 1.38629 1.38629 1.38629 1.38629 0.01810 4.71404 4.71404 1.46634 0.26236 1.09861 0.40547 27 1.94674 3.05511 0.37866 2.07651 28 G - - > 1.38629 1.38629 1.38629 1.38629 0.01810 4.71404 4.71404 1.46634 0.26236 1.09861 0.40547 28 4.17483 3.92590 4.72747 0.04495 29 U - - , 1.38629 1.38629 1.38629 1.38629 0.01810 4.71404 4.71404 1.46634 0.26236 1.09861 0.40547 29 3.90254 0.11850 4.44068 2.52865 30 C - - , 1.38629 1.38629 1.38629 1.38629 0.01810 4.71404 4.71404 1.46634 0.26236 1.09861 0.40547 30 0.73268 2.52975 1.64666 1.39832 31 a - - , 1.38629 1.38629 1.38629 1.38629 0.01810 4.71404 4.71404 1.46634 0.26236 1.09861 0.40547 31 2.92475 0.66625 2.01397 1.20654 32 C - - < 1.38629 1.38629 1.38629 1.38629 0.01810 4.71404 4.71404 1.46634 0.26236 1.09861 0.40547 32 0.75415 2.97205 1.76644 1.17944 33 a - - < 1.38629 1.38629 1.38629 1.38629 0.01810 4.71404 4.71404 1.46634 0.26236 1.09861 0.40547 33 3.73452 0.72359 3.53736 0.77216 34 c - - < 1.38629 1.38629 1.38629 1.38629 0.01810 4.71404 4.71404 1.46634 0.26236 1.09861 0.40547 34 1.57172 3.74181 0.30005 3.58209 35 G - - < 1.38629 1.38629 1.38629 1.38629 0.35894 1.22890 4.71404 0.06021 2.83987 1.09861 0.40547 35 1.91698 1.22752 2.20362 0.79956 37 u - - < 1.38629 1.38629 1.38629 1.38629 0.01810 4.71404 4.71404 1.46634 0.26236 1.09861 0.40547 36 3.69449 2.33177 2.72672 0.20754 38 U - - < 1.38629 1.38629 1.38629 1.38629 0.01810 4.71404 4.71404 1.46634 0.26236 1.09861 0.40547 37 4.17483 3.92590 4.72747 0.04495 39 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01810 4.71404 4.71404 1.46634 0.26236 1.09861 0.40547 38 4.17483 3.92590 4.72747 0.04495 40 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01810 4.71404 4.71404 1.46634 0.26236 1.09861 0.40547 39 4.17828 5.21910 0.03041 4.68715 41 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01810 4.71404 4.71404 1.46634 0.26236 1.09861 0.40547 40 0.02935 4.84778 4.46562 4.64791 42 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01810 4.71404 4.71404 1.46634 0.26236 1.09861 0.40547 41 2.67417 4.38074 0.10515 3.99904 43 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01810 4.71404 4.71404 1.46634 0.26236 1.09861 0.40547 42 1.03002 3.71742 0.53172 3.47014 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.01810 4.71404 4.71404 1.46634 0.26236 1.09861 0.40547 43 1.07055 1.96058 0.92354 2.12616 45 g - - > 1.38629 1.38629 1.38629 1.38629 0.01810 4.71404 4.71404 1.46634 0.26236 1.09861 0.40547 44 3.80509 0.32801 3.55771 1.47454 46 C - - > 1.38629 1.38629 1.38629 1.38629 0.01810 4.71404 4.71404 1.46634 0.26236 1.09861 0.40547 45 0.81571 3.69868 0.68846 3.48762 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.01810 4.71404 4.71404 1.46634 0.26236 1.09861 0.40547 46 1.21548 2.63904 2.78878 0.56123 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.01810 4.71404 4.71404 1.46634 0.26236 1.09861 0.40547 47 1.30521 2.10494 0.61967 2.67494 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.01810 4.71404 4.71404 1.46634 0.26236 1.09861 0.40547 48 1.44536 1.79695 0.67479 2.41608 50 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01810 4.71404 4.71404 1.46634 0.26236 1.09861 0.40547 49 3.39295 0.78738 3.13937 0.75919 51 u - - ) 1.38629 1.38629 1.38629 1.38629 0.01810 4.71404 4.71404 1.46634 0.26236 1.09861 0.40547 50 0.20610 4.26494 1.87324 3.98596 52 A - - ) 1.38629 1.38629 1.38629 1.38629 0.01810 4.71404 4.71404 1.46634 0.26236 1.09861 0.40547 51 0.73109 3.70341 0.76900 3.48994 53 a - - ) 1.38629 1.38629 1.38629 1.38629 0.01810 4.71404 4.71404 1.46634 0.26236 1.09861 0.40547 52 3.92869 5.03638 0.03531 4.76405 54 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01810 4.71404 4.71404 1.46634 0.26236 1.09861 0.40547 53 1.76846 3.96070 0.24058 3.72212 55 G - - ) 1.38629 1.38629 1.38629 1.38629 0.04802 4.71404 3.27229 1.46634 0.26236 1.09861 0.40547 54 3.69527 0.44981 3.44717 1.18556 56 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01864 4.68466 4.68466 1.46634 0.26236 1.82907 0.17502 55 0.85472 2.42586 1.83626 1.11846 57 a - - : 1.38629 1.38629 1.38629 1.38629 0.01864 4.68466 4.68466 1.46634 0.26236 1.82907 0.17502 56 4.12920 3.88431 4.68092 0.04702 58 U - - : 1.38629 1.38629 1.38629 1.38629 0.00937 4.67538 * 1.46634 0.26236 0.00000 * //