# STOCKHOLM 1.0
#=GF ID salivarius-1
#=GF AC RF03030
#=GF DE salivarius-1 RNA
#=GF AU Weinberg Z; 0000-0002-6681-3624
#=GF GA 50.0
#=GF NC 37.2
#=GF TC 55.1
#=GF SE Weinberg Z
#=GF SS Published; PMID:28977401;
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 28977401
#=GF RT Detection of 224 candidate structured RNAs by comparative analysis of
#=GF RT specific subsets of intergenic regions.
#=GF RA Weinberg Z, Lunse CE, Corbino KA, Ames TD, Nelson JW, Roth A, Perkins KR,
#=GF RA Sherlock ME, Breaker RR
#=GF RL Nucleic Acids Res. 2017;45:10811-10823.
#=GF CC Lactobacillus salivarius (Firmicutes). Lineage (Lactobacillaceae) is an
#=GF CC non-coding RNA (ncRNA) detected by Zasha Weinberg by a bioinformatic
#=GF CC analysis on metagenomic dataset. Its structure has been reported in PDB
#=GF CC 9G4Q.
#=GF WK Salivarius-1_RNA_motif
#=GF SQ 20

URS0000D6A1A4_1423799/1-55                GCCCUAGAUGUA-AAGAUU-UGAA-UAUUCAGGUAGAUUUGAGGCUAUCCUGGGGCUU
URS0000D6605F_768728/1-55                 GUCCUACAUCCACAAGAUC-UGAG-UGGUCGCUUA-CUUUGAGGGUAAGGUAGGACAU
URS0000D6CB6C_362948/1-55                 GUCCUACAUCCACAAGAUU-UGAG-UGGUCGCUUA-CUUUGAGGGUAAGGUAGGACAU
URS0000D6CB6C_1423799/1-55                GUCCUACAUCCACAAGAUU-UGAG-UGGUCGCUUA-CUUUGAGGGUAAGGUAGGACAU
URS0000D68AF9_768728/1-56                 GCCCUAUAUCCACAUGAUC-UGAG-UGGUCACUUGCUUUUGAGAACAAGAUAGGGUGU
URS0000D670F3_1423799/1-56                GCCCUAUAUCCACAAGAUC-UGAG-UGGUCACUUGCUUUUGAGAACAAGAUAGGGUGU
URS0000D670F3_362948/1-56                 GCCCUAUAUCCACAAGAUC-UGAG-UGGUCACUUGCUUUUGAGAACAAGAUAGGGUGU
URS0000D68032_1423799/1-57                GCCCUAGAUCCACAUGAUU-UGAGUAGGUUACUUGUUUUUGAAAGCAAGCUAGGGUAU
URS0000D6CF37_1423799/1-56                GCCUUGUAUUAGUGUAAUU-UGAAACUAUCACACG-UUUUGAGGACGUGACAAGGCAU
URS0000D6B1B4_712961/1-56                 GCCUUGCAUCCACAUGAUU-UGAGAUGGUCACACG-UUUUGAGGGCGUGGCAAGGCUU
URS0000D6B1B4_362948/1-56                 GCCUUGCAUCCACAUGAUU-UGAGAUGGUCACACG-UUUUGAGGGCGUGGCAAGGCUU
URS0000D6625F_362948/1-56                 GCCUUGCAUCCACAUGAUU-UGAGAUGGUCACACG-UUUUGAGGGCGUGGUAAGGCUU
URS0000D6625F_768728/1-56                 GCCUUGCAUCCACAUGAUU-UGAGAUGGUCACACG-UUUUGAGGGCGUGGUAAGGCUU
URS0000D66088_12908/1-56                  GCCUUGCAUCCACAUGAUU-UGAGAUGGUCGUAUG-UGUUGAGAGCAUAGCAAGGCUU
URS0000D67975_362948/1-57                 GCCUUGUAUCCACGAUAUUUUGAGUUGGUCUUACG-CUUUGAGAACGUAGCAAGGUAU
URS0000D67975_1423799/1-57                GCCUUGUAUCCACGAUAUUUUGAGUUGGUCUUACG-CUUUGAGAACGUAGCAAGGUAU
URS0000D6B9EA_768728/1-57                 ACCUUGUAUCCACGAUAUUUUGAGUUGGUCUUACG-CUUUGAGAACGUAGCAAGGUAU
URS0000D65998_1423799/1-56                GCCUUGUAUCCACAUGAUU-UGAGCUGGUCUUACG-UUUUGAGGACGUAGCAAGGCAU
URS0000D6C4F7_1423799/1-57                GCCUUGUAUCUGCAUGAUU-UGAGACAGUCUUACGCUUUUGAGGACGUAGCAAGGCUU
URS0003421776_362948/1-52                 -CCUUGCAUCCACAUGAUU-UGAGAUGGUCACACG-UUUUGAGGGCGUGGUAAGG---
#=GR URS0003421776_362948/1-52  9G4Q_A_SS .((((((..((((.........{).))).{.((((.((.}..}))))))))))))...
#=GR URS0003421776_362948/1-52  9G4Q_B_SS .((((((..((((.........{).))).{.((((.((.}..}))))))))))))...
#=GC SS_cons                              (((((((,,<<<<______.__A>->>>,B,<<<<.<<_a__b>>>>>>)))))))::
#=GC RF                                   GCCcUgcAUCCACAuGAUU.UGAGaUGGUCacacG.uuUUGAGgaCguggcAgGGCaU
#=GC RNA_structural_elements              [P1=5p]==[=======P2========]===[=======P3=======][P1=3p]==
//
